CSPI03G21860 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21860
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Little protein 1
Location	Chr3 : 18314552 .. 18315171 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATTCGTCCTCCTCCTCCTACTCCTCCTATTGCTCGTTATACGCTCCGTTGTGCTCCGGCGAATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCAATTTGAGATAATACGCAATAATGCTGTTCCTTTACATGTTTTTTTTCCCTAAGTCCAATAATGTATATTAATAATGGATCTCAATTTAAGAGTAAAATTAATAGGCTAAATATACCCTATGTCTCTTCTCATATATATATATATACCCTATGTGTAGCCAACTAATAATAACAAGTTTGATCCTTTGAAGAGCTGTTTTTGCAAGTTTGATCCTTGCTAGACTCATAGTAGGAAAGTACTTGGGGGATGAGGAAGATTTTGAGCGAGGTTTATTACCAAAGTTTGAGGGGAGATCAACAAATTTATAATGTTTTATTTACCCTAATCC

mRNA sequence

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCAATTTGA

Coding sequence (CDS)

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCAATTTGA

Homology

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BLAST of CSPI03G21860 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CSPI03G21860 vs. TrEMBL
Match: I3SB72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.7e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]

BLAST of CSPI03G21860 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-33
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of CSPI03G21860 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]

BLAST of CSPI03G21860 vs. TrEMBL
Match: V4ST33_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013249mg PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AA+VEWP+GALVFCF+H KGRRIM
Sbjct: 1  MTAGIGIPICVQCGTRSNPCRCKVVGPTVGFLAFAAAAIVEWPLGALVFCFKHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYP V+NA+PI
Sbjct: 61 AHPATVVYPRVTNAIPI 77

[Close]

BLAST of CSPI03G21860 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 9.9e-28
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAVPI 78
          VYP VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

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BLAST of CSPI03G21860 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CSPI03G21860 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of CSPI03G21860 vs. NCBI nr
Match: gi|388498896|gb|AFK37514.1| (unknown [Lotus japonicus])

HSP 1 Score: 147.5 bits (371), Expect = 9.6e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]

BLAST of CSPI03G21860 vs. NCBI nr
Match: gi|702374339|ref|XP_010062235.1| (PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of CSPI03G21860 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

The following BLAST results are available for this feature:

BLAST of CSPI03G21860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45_CUCSA	1.1e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
I3SB72_LOTJA	6.7e-33	85.33	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A059BUM2_EUCGR	8.8e-33	84.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]
D7TSS2_VITVI	1.1e-32	83.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=...	[more]
V4ST33_9ROSI	5.7e-32	80.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013249mg PE=4 SV=1	[more]

BLAST of CSPI03G21860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	9.9e-28	70.42	unknown protein	[more]

BLAST of CSPI03G21860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466446\|ref\|XP_004150937.1\|	1.5e-38	100.00	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|659114483\|ref\|XP_008457074.1\|	1.3e-37	96.10	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|388498896\|gb\|AFK37514.1\|	9.6e-33	85.33	unknown [Lotus japonicus]	[more]
gi\|702374339\|ref\|XP_010062235.1\|	1.3e-32	84.42	PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis]	[more]
gi\|225453138\|ref\|XP_002273470.1\|	1.6e-32	83.12	PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21860.1	CSPI03G21860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21860	Cla013169	Watermelon (97103) v1	cpiwmB245
CSPI03G21860	Csa3G346910	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21860	MELO3C020291	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21860	ClCG05G010950	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21860	MELO3C020291.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21860	CsaV3_3G021640	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21860	Cla97C05G093240	Watermelon (97103) v2	cpiwmbB224
CSPI03G21860	Cucsa.012680	Cucumber (Gy14) v1	cgycpiB299
CSPI03G21860	CmoCh14G008670	Cucurbita moschata (Rifu)	cmocpiB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21860	Wax gourd	cpiwgoB299
CSPI03G21860	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21860	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21860	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21860	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21860	Silver-seed gourd	carcpiB0798