Csa3G346910.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G346910.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Little protein 1
Location	Chr3 : 18133991 .. 18134401 (-)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCCTCCTCCTACTCCTCCTATTGCTCGTTATACGCTCCGTTGTGCTCCGGCGAATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGAGATAATACGCAAGAATGCTGTTCCTTTACATGCTTTTTTTCCCCAAGTCCAATAATGTATATTAATAATGGATCTCAATTTAAGAGTAAAATTAATAGGCTAAATATACCCTATGTCTCTT

mRNA sequence

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGA

Coding sequence (CDS)

ATGGGTGTGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGGTTCCGATTTGA

Protein sequence

MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI*

Homology

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BLAST of Csa3G346910.1 vs. TrEMBL
Match: A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Csa3G346910.1 vs. TrEMBL
Match: I3SB72_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.7e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]

BLAST of Csa3G346910.1 vs. TrEMBL
Match: A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-33
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of Csa3G346910.1 vs. TrEMBL
Match: D7TSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

[Close]

BLAST of Csa3G346910.1 vs. TrEMBL
Match: K7LRJ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIGVPIC++CG  SNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH KGR+IM H
Sbjct: 2  VGIGVPICVQCGNTSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHSKGRKIMGH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATV+YPSV+NA+PI
Sbjct: 62 PATVIYPSVTNAIPI 76

[Close]

BLAST of Csa3G346910.1 vs. TAIR10
Match: AT3G03341.1 (AT3G03341.1 unknown protein)

HSP 1 Score: 119.4 bits (298), Expect = 9.9e-28
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAVPI 78
          VYP VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

[Close]

BLAST of Csa3G346910.1 vs. NCBI nr
Match: gi|449466446|ref|XP_004150937.1| (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Csa3G346910.1 vs. NCBI nr
Match: gi|659114483|ref|XP_008457074.1| (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of Csa3G346910.1 vs. NCBI nr
Match: gi|388498896|gb|AFK37514.1| (unknown [Lotus japonicus])

HSP 1 Score: 147.5 bits (371), Expect = 9.6e-33
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  VGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAH 62
          VGIG+PIC++CGTHSNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGR+IMAH
Sbjct: 2  VGIGIPICVQCGTHSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHVKGRKIMAH 61

Query: 63 PATVVYPSVSNAVPI 78
          PATVVYPSV+ A+PI
Sbjct: 62 PATVVYPSVNKAIPI 76

[Close]

BLAST of Csa3G346910.1 vs. NCBI nr
Match: gi|702374339|ref|XP_010062235.1| (PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIG+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPATVVYPSV NA+PI
Sbjct: 61 AHPATVVYPSVINAIPI 77

[Close]

BLAST of Csa3G346910.1 vs. NCBI nr
Match: gi|225453138|ref|XP_002273470.1| (PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+ +P+C++CGTHSNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTAGVRIPLCVQCGTHSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 78
          AHPA VVYPSVSNA PI
Sbjct: 61 AHPAAVVYPSVSNAFPI 77

The following BLAST results are available for this feature:

BLAST of Csa3G346910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45_CUCSA	1.1e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346910 PE=4 SV=1	[more]
I3SB72_LOTJA	6.7e-33	85.33	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A059BUM2_EUCGR	8.8e-33	84.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02822 PE=4 SV=1	[more]
D7TSS2_VITVI	1.1e-32	83.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01580 PE=4 SV=...	[more]
K7LRJ2_SOYBN	5.7e-32	84.00	Uncharacterized protein OS=Glycine max GN=GLYMA_11G218400 PE=4 SV=1	[more]

BLAST of Csa3G346910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	9.9e-28	70.42	unknown protein	[more]

BLAST of Csa3G346910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466446\|ref\|XP_004150937.1\|	1.5e-38	100.00	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus]	[more]
gi\|659114483\|ref\|XP_008457074.1\|	1.3e-37	96.10	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
gi\|388498896\|gb\|AFK37514.1\|	9.6e-33	85.33	unknown [Lotus japonicus]	[more]
gi\|702374339\|ref\|XP_010062235.1\|	1.3e-32	84.42	PREDICTED: uncharacterized protein LOC104449694 [Eucalyptus grandis]	[more]
gi\|225453138\|ref\|XP_002273470.1\|	1.6e-32	83.12	PREDICTED: uncharacterized protein LOC100246645 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G346910	Csa3G346910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G346910.1	Csa3G346910.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G346910.1.utr3p1	Csa3G346910.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G346910.1.cds1	Csa3G346910.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G346910.1.utr5p1	Csa3G346910.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77 score: 1.9