Csa1G077210 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCGTTTCAATCTTTCATCCCCTTTATCCTTTTGTATGTTTATTGTAGGATTGAAACATGAATTGACATAAATTATTATATTTTAGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTGTGCAATCGTCTTATTTTGTGAGTTTTGATTTTTTTTGGTGTGGAAGTTGATGTTACAACACCTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGTCAATGAGGATAGTGCTTTATAAATAGTAGTACAATCTTTCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGCTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCGCTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGGCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAATATTGGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTTGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTTATTTTTTATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTTCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTTAAAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTACATCTCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTAGAGAGGTTTTTTTTTTTTTTTTTTTTTGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAACAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTATTTAATTCAAAATGTTCTGTCAAAAGTGTCAACTTTTATAATGCAATGACTTAAAGTCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACGTTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATTTAAGATAAGGGACTAAAAATGCCTTTTGTAACCAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAATAAGATATTAATTTTTCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTCCTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI*
BLAST of Csa1G077210 vs. Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 6.1e-45 Identity = 98/202 (48.51%), Postives = 131/202 (64.85%), Query Frame = 1
BLAST of Csa1G077210 vs. Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 7.5e-43 Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 1
BLAST of Csa1G077210 vs. Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41 Identity = 95/203 (46.80%), Postives = 129/203 (63.55%), Query Frame = 1
BLAST of Csa1G077210 vs. Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.8e-41 Identity = 95/203 (46.80%), Postives = 129/203 (63.55%), Query Frame = 1
BLAST of Csa1G077210 vs. Swiss-Prot
Match: SUA5_PYRAB (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 6.4e-18 Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 1
BLAST of Csa1G077210 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1) HSP 1 Score: 551.6 bits (1420), Expect = 5.6e-154 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
BLAST of Csa1G077210 vs. TrEMBL
Match: A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1) HSP 1 Score: 362.1 bits (928), Expect = 6.3e-97 Identity = 185/255 (72.55%), Postives = 216/255 (84.71%), Query Frame = 1
BLAST of Csa1G077210 vs. TrEMBL
Match: A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96 Identity = 184/250 (73.60%), Postives = 215/250 (86.00%), Query Frame = 1
BLAST of Csa1G077210 vs. TrEMBL
Match: D7SKX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02920 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.8e-96 Identity = 187/276 (67.75%), Postives = 225/276 (81.52%), Query Frame = 1
BLAST of Csa1G077210 vs. TrEMBL
Match: A0A059D561_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 3.8e-94 Identity = 183/273 (67.03%), Postives = 219/273 (80.22%), Query Frame = 1
BLAST of Csa1G077210 vs. TAIR10
Match: AT5G60590.2 (AT5G60590.2 DHBP synthase RibB-like alpha/beta domain) HSP 1 Score: 329.7 bits (844), Expect = 1.7e-90 Identity = 175/276 (63.41%), Postives = 208/276 (75.36%), Query Frame = 1
BLAST of Csa1G077210 vs. TAIR10
Match: AT3G01920.1 (AT3G01920.1 DHBP synthase RibB-like alpha/beta domain) HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09 Identity = 63/210 (30.00%), Postives = 91/210 (43.33%), Query Frame = 1
BLAST of Csa1G077210 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus]) HSP 1 Score: 551.6 bits (1420), Expect = 8.0e-154 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
BLAST of Csa1G077210 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]) HSP 1 Score: 534.3 bits (1375), Expect = 1.3e-148 Identity = 270/281 (96.09%), Postives = 277/281 (98.58%), Query Frame = 1
BLAST of Csa1G077210 vs. NCBI nr
Match: gi|590590392|ref|XP_007016721.1| (DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao]) HSP 1 Score: 362.1 bits (928), Expect = 9.0e-97 Identity = 185/255 (72.55%), Postives = 216/255 (84.71%), Query Frame = 1
BLAST of Csa1G077210 vs. NCBI nr
Match: gi|590590395|ref|XP_007016722.1| (DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao]) HSP 1 Score: 361.3 bits (926), Expect = 1.5e-96 Identity = 184/250 (73.60%), Postives = 215/250 (86.00%), Query Frame = 1
BLAST of Csa1G077210 vs. NCBI nr
Match: gi|225435305|ref|XP_002285123.1| (PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vinifera]) HSP 1 Score: 360.5 bits (924), Expect = 2.6e-96 Identity = 187/276 (67.75%), Postives = 225/276 (81.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |