Cucsa.127080 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.127080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionYrdC domain-containing protein, mitochondrial
Locationscaffold01017 : 890744 .. 894945 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTGTGCAATCGTCTTATTTTGTGAGTTTTGATTTTTTTtGGTGTGGAAGTTGATGTTACAACACCTGTTTTgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATGAGGATAGTGCTTTATAAATAGTAGTACAATCTTtCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGCTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCGCTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGGCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAaTATTGGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTtGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTtATTTTTtATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTTCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTtAAAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTACATCTCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTaGAGAGGTTTTTTtTTTTTTTTTTTtGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAACAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTATTTAATTCAAAATGTTCTGTCAAAAGTGTCAACTTTTATAATGCAATGACTTAAAGTCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACGTTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATTTAAGATAAGGGACTAAAAATGCCTTTTGTAACCAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAaTAAGATATTAATTTTtCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTCCTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTtAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTtCTAAGATGACTTATTTTCAAAATATCAAAAC

mRNA sequence

ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTTAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTTCTAAGATGACTTATTTTCAAAATATCAAAAC

Coding sequence (CDS)

ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Protein sequence

MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI*
Homology
[Close]
BLAST of Cucsa.127080 vs. Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.9e-45
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 1 

Query: 21  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A   L+AG V+AVPTDTLYGLAC A  +EA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 81  VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 140
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 141 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 200
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 201 KIIRAGSAEEQTIATLERYSLL 218
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]
BLAST of Cucsa.127080 vs. Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-43
Identity = 98/208 (47.12%), Postives = 135/208 (64.90%), Query Frame = 1 

Query: 21  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 81  VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 140
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 141 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 200
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G F
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 201 KIIRAGSAEEQTIATL-ERYSLLEAAAT 223
            IIR G A E T A L ++Y LL + A+
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

[Close]
BLAST of Cucsa.127080 vs. Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 1 

Query: 21  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 140
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAEEQTIATLE-RYSLL 218
            IIR+G A E T A L+ +Y LL
Sbjct: 254 GIIRSGCALENTTAILQGKYGLL 273

[Close]
BLAST of Cucsa.127080 vs. Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-41
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 1 

Query: 21  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A   L+AG V+AVPTDTLYGLAC A S+ A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 140
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAEEQTIATL-ERYSLL 218
            IIR G A E T + L ++Y LL
Sbjct: 254 GIIRPGCALENTTSILQQKYGLL 273

[Close]
BLAST of Cucsa.127080 vs. Swiss-Prot
Match: SUA5_PYRAB (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-18
Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 1 

Query: 21  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A   ++ GK++A PT+T+YGL  +A    AV RI+E KGR   +PL I +     +    
Sbjct: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE--V 78

Query: 81  VTDHLPSG---LLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRR 140
           +   +P     L     PGP+T+VL + E  V+ + +  GLD++ VR+P  +    +   
Sbjct: 79  LAKEIPEEAEMLAKRFWPGPLTLVLPKSE--VVPRVITGGLDTVAVRMPAHEIALKLIEL 138

Query: 141 SETALALTSANLSGQPSSVCVNDF-ENLWQHCAYVYDGGVLPAGRAGSTIIDLTE 192
           SE  +A  SAN+SG+PS    +   E+ +     + DGG    G   ST+IDLTE
Sbjct: 139 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG-VESTVIDLTE 188

[Close]
BLAST of Cucsa.127080 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.1e-119
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 1   MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 60
           MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 120
           KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 180
           IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 224
           RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]
BLAST of Cucsa.127080 vs. TrEMBL
Match: A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.3e-92
Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1 

Query: 3   VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 62
           VE+ L  + PA++ +A EA  ALKAGKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK 
Sbjct: 107 VESKLGLVHPATKFYADEAVIALKAGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKH 166

Query: 63  TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 122
           TSPLAICVGDV DI RFAVTDHLP GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIG
Sbjct: 167 TSPLAICVGDVPDIKRFAVTDHLPYGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIG 226

Query: 123 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 182
           VRVPD+DFIR+I+R +E+ALALTSANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRA
Sbjct: 227 VRVPDSDFIRIIARDAESALALTSANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRA 286

Query: 183 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAAT 223
           GST++DLT+ G +KI+R GSA+E+T+A LE+YSLLE AA+
Sbjct: 287 GSTVVDLTKPGKYKILRPGSAKEETVAILEKYSLLEEAAS 326

[Close]
BLAST of Cucsa.127080 vs. TrEMBL
Match: A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.3e-92
Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1 

Query: 3   VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 62
           VE+ L  + PA++ +A EA  ALKAGKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK 
Sbjct: 57  VESKLGLVHPATKFYADEAVIALKAGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKH 116

Query: 63  TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 122
           TSPLAICVGDV DI RFAVTDHLP GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIG
Sbjct: 117 TSPLAICVGDVPDIKRFAVTDHLPYGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIG 176

Query: 123 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 182
           VRVPD+DFIR+I+R +E+ALALTSANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRA
Sbjct: 177 VRVPDSDFIRIIARDAESALALTSANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRA 236

Query: 183 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAAT 223
           GST++DLT+ G +KI+R GSA+E+T+A LE+YSLLE AA+
Sbjct: 237 GSTVVDLTKPGKYKILRPGSAKEETVAILEKYSLLEEAAS 276

[Close]
BLAST of Cucsa.127080 vs. TrEMBL
Match: A0A059D561_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.1e-91
Identity = 168/217 (77.42%), Postives = 196/217 (90.32%), Query Frame = 1 

Query: 2   RVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRK 61
           + E  L  +R A+E  A EA +ALK+GKVIAVPTDTLYG ACDACSAEAV+RIYEIKGRK
Sbjct: 50  KCEGKLDVVREATEPHAPEAVEALKSGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRK 109

Query: 62  LTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSI 121
            TSPLAICVGDVSDI RFAVT+HLP GLLDSLLPGPVTV+L+RGESS+LDKSLNPGLDSI
Sbjct: 110 HTSPLAICVGDVSDIERFAVTNHLPHGLLDSLLPGPVTVILRRGESSILDKSLNPGLDSI 169

Query: 122 GVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR 181
           GVRVPD +FIR+I+R + +ALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GR
Sbjct: 170 GVRVPDCNFIRVIARGAGSALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGR 229

Query: 182 AGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 219
           AGSTI+DLT+ G++KI+R GSAEE+T+A L+R+SL+E
Sbjct: 230 AGSTIVDLTKLGSYKILRPGSAEEETVAILQRHSLIE 266

[Close]
BLAST of Cucsa.127080 vs. TrEMBL
Match: A0A0D2VKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G266600 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.1e-91
Identity = 168/216 (77.78%), Postives = 195/216 (90.28%), Query Frame = 1 

Query: 3   VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 62
           VEN L+ +R A+E+ A EA +ALKAGKVIAVPTDTLYG ACDACS+EAV+RIY+IKGRK 
Sbjct: 12  VENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 71

Query: 63  TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 122
           TSPLAICVGDVSDI  FAVTDHLP GLLDSLLPGPVT+VL RGESS+L+KSLNPGLDSIG
Sbjct: 72  TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSLNPGLDSIG 131

Query: 123 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 182
           VRVPD+DFIR+I+R S +ALALTSANLSGQPSSV + DFENLW+HCAYVY+GGVLPAGRA
Sbjct: 132 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 191

Query: 183 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 219
           GST++DLT+ G ++I+R GSA+E+T+A LE YSLLE
Sbjct: 192 GSTVVDLTKPGKYRILRPGSAKEETVAILENYSLLE 227

[Close]
BLAST of Cucsa.127080 vs. TAIR10
Match: AT5G60590.2 (AT5G60590.2 DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-87
Identity = 160/221 (72.40%), Postives = 186/221 (84.16%), Query Frame = 1 

Query: 2   RVENCLQA----LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEI 61
           R E C+ +    + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACDACS EAV RIYEI
Sbjct: 56  RAETCVVSKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEI 115

Query: 62  KGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPG 121
           KGRKLTSPLAICVGDV DI R A T HLP GLLDSLLPGPVT+VL+RGESS+L+KSLNPG
Sbjct: 116 KGRKLTSPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPG 175

Query: 122 LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL 181
           + +IGVRVPD +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+L
Sbjct: 176 IGTIGVRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLL 235

Query: 182 PAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 219
           P+GRAGSTI+DLT+ G +KIIR GSA++ T+A LE+Y L E
Sbjct: 236 PSGRAGSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEE 276

[Close]
BLAST of Cucsa.127080 vs. TAIR10
Match: AT3G01920.1 (AT3G01920.1 DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 63/210 (30.00%), Postives = 93/210 (44.29%), Query Frame = 1 

Query: 19  QEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITR 78
           Q   D LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 79  FAVTDHLPSG----------LLDSLLPGPVTVVLKR-----------GESSVLDKSLNPG 138
           F  T   P G           +   LPGP T +L             G +SV   S    
Sbjct: 144 F--TMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASRK-- 203

Query: 139 LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVY 198
             ++GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V 
Sbjct: 204 --NVGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVV 263

Query: 199 DGGVLPAGRAGSTIIDLTEQGTF-KIIRAG 202
           DGG+  A    STI+D+T  G + K+IR G
Sbjct: 264 DGGIRVA--EPSTIVDMT--GPYPKVIREG 281

[Close]
BLAST of Cucsa.127080 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 3.0e-119
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 1   MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 60
           MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 120
           KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 180
           IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 224
           RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]
BLAST of Cucsa.127080 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 9.0e-116
Identity = 215/223 (96.41%), Postives = 221/223 (99.10%), Query Frame = 1 

Query: 1   MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 60
           M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR
Sbjct: 59  MPVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 120
           KLTSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS
Sbjct: 119 KLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 180
           IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 224
           RAGSTI+DLTE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 239 RAGSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]
BLAST of Cucsa.127080 vs. NCBI nr
Match: gi|590590392|ref|XP_007016721.1| (DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao])

HSP 1 Score: 347.4 bits (890), Expect = 1.8e-92
Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1 

Query: 3   VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 62
           VE+ L  + PA++ +A EA  ALKAGKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK 
Sbjct: 107 VESKLGLVHPATKFYADEAVIALKAGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKH 166

Query: 63  TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 122
           TSPLAICVGDV DI RFAVTDHLP GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIG
Sbjct: 167 TSPLAICVGDVPDIKRFAVTDHLPYGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIG 226

Query: 123 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 182
           VRVPD+DFIR+I+R +E+ALALTSANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRA
Sbjct: 227 VRVPDSDFIRIIARDAESALALTSANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRA 286

Query: 183 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAAT 223
           GST++DLT+ G +KI+R GSA+E+T+A LE+YSLLE AA+
Sbjct: 287 GSTVVDLTKPGKYKILRPGSAKEETVAILEKYSLLEEAAS 326

[Close]
BLAST of Cucsa.127080 vs. NCBI nr
Match: gi|590590395|ref|XP_007016722.1| (DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao])

HSP 1 Score: 347.4 bits (890), Expect = 1.8e-92
Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1 

Query: 3   VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 62
           VE+ L  + PA++ +A EA  ALKAGKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK 
Sbjct: 57  VESKLGLVHPATKFYADEAVIALKAGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKH 116

Query: 63  TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 122
           TSPLAICVGDV DI RFAVTDHLP GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIG
Sbjct: 117 TSPLAICVGDVPDIKRFAVTDHLPYGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIG 176

Query: 123 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 182
           VRVPD+DFIR+I+R +E+ALALTSANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRA
Sbjct: 177 VRVPDSDFIRIIARDAESALALTSANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRA 236

Query: 183 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAAT 223
           GST++DLT+ G +KI+R GSA+E+T+A LE+YSLLE AA+
Sbjct: 237 GSTVVDLTKPGKYKILRPGSAKEETVAILEKYSLLEEAAS 276

[Close]
BLAST of Cucsa.127080 vs. NCBI nr
Match: gi|702272639|ref|XP_010043742.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 344.4 bits (882), Expect = 1.5e-91
Identity = 168/217 (77.42%), Postives = 196/217 (90.32%), Query Frame = 1 

Query: 2   RVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRK 61
           + E  L  +R A+E  A EA +ALK+GKVIAVPTDTLYG ACDACSAEAV+RIYEIKGRK
Sbjct: 50  KCEGKLDVVREATEPHAPEAVEALKSGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRK 109

Query: 62  LTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSI 121
            TSPLAICVGDVSDI RFAVT+HLP GLLDSLLPGPVTV+L+RGESS+LDKSLNPGLDSI
Sbjct: 110 HTSPLAICVGDVSDIERFAVTNHLPHGLLDSLLPGPVTVILRRGESSILDKSLNPGLDSI 169

Query: 122 GVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGR 181
           GVRVPD +FIR+I+R + +ALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GR
Sbjct: 170 GVRVPDCNFIRVIARGAGSALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGR 229

Query: 182 AGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 219
           AGSTI+DLT+ G++KI+R GSAEE+T+A L+R+SL+E
Sbjct: 230 AGSTIVDLTKLGSYKILRPGSAEEETVAILQRHSLIE 266

The following BLAST results are available for this feature:
BLAST of Cucsa.127080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YRDC_BOVIN4.9e-4548.51YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1[more]
YRDC_HUMAN5.9e-4347.12YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1[more]
YRDC_RAT1.1e-4146.80YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 ... [more]
YRDC_MOUSE1.5e-4146.80YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1[more]
SUA5_PYRAB5.1e-1834.29Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5... [more]
BLAST of Cucsa.127080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUP4_CUCSA2.1e-119100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1[more]
A0A061GWW4_THECC1.3e-9278.18DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_04... [more]
A0A061GXZ3_THECC1.3e-9278.18DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma caca... [more]
A0A059D561_EUCGR1.1e-9177.42Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1[more]
A0A0D2VKK6_GOSRA4.1e-9177.78Uncharacterized protein OS=Gossypium raimondii GN=B456_013G266600 PE=4 SV=1[more]
BLAST of Cucsa.127080 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60590.21.4e-8772.40 DHBP synthase RibB-like alpha/beta domain[more]
AT3G01920.11.6e-0930.00 DHBP synthase RibB-like alpha/beta domain[more]
BLAST of Cucsa.127080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462123|ref|XP_004148791.1|3.0e-119100.00PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus][more]
gi|659130663|ref|XP_008465284.1|9.0e-11696.41PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo][more]
gi|590590392|ref|XP_007016721.1|1.8e-9278.18DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao][more]
gi|590590395|ref|XP_007016722.1|1.8e-9278.18DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao][more]
gi|702272639|ref|XP_010043742.1|1.5e-9177.42PREDICTED: yrdC domain-containing protein, mitochondrial [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006070YrdC-like_dom
IPR017945DHBP_synth_RibB-like_a/b_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003725double-stranded RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003725 double-stranded RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.127080.1Cucsa.127080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 24..201
score: 9.3
IPR006070YrdC-like domainTIGRFAMsTIGR00057TIGR00057coord: 17..208
score: 1.6
IPR006070YrdC-like domainPROFILEPS51163YRDCcoord: 15..203
score: 25
IPR017945DHBP synthase RibB-like alpha/beta domainGENE3DG3DSA:3.90.870.10coord: 18..210
score: 1.0
IPR017945DHBP synthase RibB-like alpha/beta domainunknownSSF55821YrdC/RibBcoord: 17..203
score: 1.53
NoneNo IPR availablePANTHERPTHR17490SUA5coord: 11..212
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.127080Cla008297Watermelon (97103) v1cgywmB206
Cucsa.127080Csa1G077210Cucumber (Chinese Long) v2cgycuB170
Cucsa.127080MELO3C026847Melon (DHL92) v3.5.1cgymeB197
Cucsa.127080ClCG03G002070Watermelon (Charleston Gray)cgywcgB204
Cucsa.127080CSPI01G12530Wild cucumber (PI 183967)cgycpiB172
Cucsa.127080Lsi02G014090Bottle gourd (USVL1VR-Ls)cgylsiB195
Cucsa.127080MELO3C026847.2Melon (DHL92) v3.6.1cgymedB196
Cucsa.127080CsaV3_1G012730Cucumber (Chinese Long) v3cgycucB174
Cucsa.127080Cla97C03G053070Watermelon (97103) v2cgywmbB201
Cucsa.127080Bhi08G000299Wax gourdcgywgoB234
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None