CSPI01G12530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	YrdC domain-containing protein, mitochondrial
Location	Chr1 : 7978242 .. 7981917 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCGTTTCAATCTTTCATCCCCTTTATCCTTTTGTATGTTTATTGTAGGATTGAAACATGAATTGACATAAATTATTACATTTTAGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCTCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTTGTGCAATTGTCTTATTTTGTGAGTTTTGATTTTTTTTGGTGTGGAAGTTGATGTTACAACACCTGTTTGTTTGTTTTTTTTTTTTTTTGTCAATGATGATAGTGCTTTATAAATAGTAGTACAATCTTTCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGTTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCACTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTCTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGTCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAATATTTGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTTGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTTATTTTTTATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTCCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTTTAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTATATATCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTAGAGAGGTTTTTTTTTTTTTTTTTTTTGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAAAAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTACTTAATTCGAAATGTTCTGTCAAAAGCGTCAACTTTTATAATGCAATGACTTAAAATCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACATTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATCTAAGATAAGGAACTAAAAATGCCTTTTGTAACAAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAATAAGATATTAATTTTTCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTACTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCTTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

mRNA sequence

ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCTCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCTTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Coding sequence (CDS)

ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCTCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCTTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Homology

[Close]

BLAST of CSPI01G12530 vs. Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.4e-46
Identity = 97/202 (48.02%), Postives = 133/202 (65.84%), Query Frame = 1


Query: 79  ATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGL+C A  +EA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 259 KIIRAGSAEEQTIATLERYSLL 276
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of CSPI01G12530 vs. Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-43
Identity = 97/208 (46.63%), Postives = 135/208 (64.90%), Query Frame = 1


Query: 79  ATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGL+C A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G F
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 259 KIIRAGSAEEQTIATL-ERYSLLEAAAT 281
            IIR G A E T A L ++Y LL + A+
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

[Close]

BLAST of CSPI01G12530 vs. Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-42
Identity = 94/203 (46.31%), Postives = 131/203 (64.53%), Query Frame = 1


Query: 79  ATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGL+C A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 259 KIIRAGSAEEQTIATLE-RYSLL 276
            IIR+G A E T A L+ +Y LL
Sbjct: 254 GIIRSGCALENTTAILQGKYGLL 273

[Close]

BLAST of CSPI01G12530 vs. Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.8e-42
Identity = 94/203 (46.31%), Postives = 131/203 (64.53%), Query Frame = 1


Query: 79  ATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGL+C A S+ A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 259 KIIRAGSAEEQTIATL-ERYSLL 276
            IIR G A E T + L ++Y LL
Sbjct: 254 GIIRPGCALENTTSILQQKYGLL 273

[Close]

BLAST of CSPI01G12530 vs. Swiss-Prot
Match: TSAC_METJA (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-22
Identity = 67/185 (36.22%), Postives = 103/185 (55.68%), Query Frame = 1


Query: 86  GKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 145
           GK++   TDTLYG+S +A + +AV ++Y IK R+   PL+ICV D ++I ++A  + L  
Sbjct: 32  GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91

Query: 146 GLLDSLLPGPVTVVLKR--GESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALT 205
            ++D  LPGP+T++LK+  G   ++ K      D IG+R+PD   IR +   S   L  T
Sbjct: 92  KIIDKFLPGPLTIILKKKPGIPDIVAK------DYIGIRIPDEPIIREL---SIVPLTTT 151

Query: 206 SANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAE 265
           SAN+SG+ S   V++ +  + +   YV D G     +  STII + E      IR G   
Sbjct: 152 SANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP-STIIKI-EDDKIISIREGVIP 205

Query: 266 EQTIA 268
            Q +A
Sbjct: 212 IQKLA 205

[Close]

BLAST of CSPI01G12530 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 5.6e-154
Identity = 280/281 (99.64%), Postives = 281/281 (100.00%), Query Frame = 1


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGL+CDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CSPI01G12530 vs. TrEMBL
Match: A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.2e-97
Identity = 184/255 (72.16%), Postives = 216/255 (84.71%), Query Frame = 1


Query: 27  GSSNYGIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKA 86
           G    G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKA
Sbjct: 72  GVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKA 131

Query: 87  GKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 146
           GKVIAVPTDTLYG +CDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP 
Sbjct: 132 GKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPY 191

Query: 147 GLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSA 206
           GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSA
Sbjct: 192 GLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSA 251

Query: 207 NLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQT 266
           NLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T
Sbjct: 252 NLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEET 311

Query: 267 IATLERYSLLEAAAT 281
           +A LE+YSLLE AA+
Sbjct: 312 VAILEKYSLLEEAAS 326

[Close]

BLAST of CSPI01G12530 vs. TrEMBL
Match: A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.8e-97
Identity = 183/250 (73.20%), Postives = 215/250 (86.00%), Query Frame = 1


Query: 32  GIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIA 91
           G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGKVIA
Sbjct: 27  GFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGKVIA 86

Query: 92  VPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDS 151
           VPTDTLYG +CDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GLLDS
Sbjct: 87  VPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGLLDS 146

Query: 152 LLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQ 211
           LLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANLSGQ
Sbjct: 147 LLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANLSGQ 206

Query: 212 PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLE 271
           PSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T+A LE
Sbjct: 207 PSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVAILE 266

Query: 272 RYSLLEAAAT 281
           +YSLLE AA+
Sbjct: 267 KYSLLEEAAS 276

[Close]

BLAST of CSPI01G12530 vs. TrEMBL
Match: D7SKX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02920 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 186/276 (67.39%), Postives = 225/276 (81.52%), Query Frame = 1


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVEN 63
           +PAK A+  SL+ TF + P   LG + +G V  L++NR  RVSF K   ++      + +
Sbjct: 3   IPAKFAER-SLLLTFRS-PLRALGVAKFGFVQILKQNRRFRVSFPKKMEAV------MGS 62

Query: 64  CLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSP 123
            L  +RPA++A A+EA +A+KAGKVIAVPTDTLYG +CDACS+EAV+RIYEIKGRK TSP
Sbjct: 63  ELGVVRPATDAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSP 122

Query: 124 LAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRV 183
           LAICVGDV DI RFAVTDHLP GLL SLLPGPVTVVL+RGE S+++KSLNPGLDSIGVRV
Sbjct: 123 LAICVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRV 182

Query: 184 PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGST 243
           PD DFIR+I+  SETALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST
Sbjct: 183 PDCDFIRVIAHGSETALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGST 242

Query: 244 IIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAA 280
           ++DL+  G +KI+R GSA E+T+A LER+SL+  AA
Sbjct: 243 VVDLSRLGKYKILRPGSAMEETVAILERHSLMPEAA 270

[Close]

BLAST of CSPI01G12530 vs. TrEMBL
Match: A0A059D561_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.2e-94
Identity = 182/273 (66.67%), Postives = 219/273 (80.22%), Query Frame = 1


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVEN 63
           +P K+A +L  +     FP S  G    G V   +++R       +   SL+KC    E 
Sbjct: 3   VPTKIAHTLPPLLLHARFPLS--GVPRNGFVRIPEQSRRLESKMAR---SLDKC----EG 62

Query: 64  CLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSP 123
            L  +R A+E  A EA +ALK+GKVIAVPTDTLYG +CDACSAEAV+RIYEIKGRK TSP
Sbjct: 63  KLDVVREATEPHAPEAVEALKSGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRKHTSP 122

Query: 124 LAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRV 183
           LAICVGDVSDI RFAVT+HLP GLLDSLLPGPVTV+L+RGESS+LDKSLNPGLDSIGVRV
Sbjct: 123 LAICVGDVSDIERFAVTNHLPHGLLDSLLPGPVTVILRRGESSILDKSLNPGLDSIGVRV 182

Query: 184 PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGST 243
           PD +FIR+I+R + +ALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST
Sbjct: 183 PDCNFIRVIARGAGSALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGST 242

Query: 244 IIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 277
           I+DLT+ G++KI+R GSAEE+T+A L+R+SL+E
Sbjct: 243 IVDLTKLGSYKILRPGSAEEETVAILQRHSLIE 266

[Close]

BLAST of CSPI01G12530 vs. TAIR10
Match: AT5G60590.2 (AT5G60590.2 DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 330.9 bits (847), Expect = 7.8e-91
Identity = 174/276 (63.04%), Postives = 210/276 (76.09%), Query Frame = 1


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTN-WSLEKC--CMR 63
           L  ++A+ L  I    + P  + G S     S   ++R  R    K   WSLE+   C+ 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 64  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKL 123
            ++CL  + PA+EA+AQEA +A+K+ KVIAVPTDTLYG +CDACS EAV RIYEIKGRKL
Sbjct: 63  SKSCL--VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKL 122

Query: 124 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 183
           TSPLAICVGDV DI R A T HLP GLLDSLLPGPVT+VL+RGESS+L+KSLNPG+ +IG
Sbjct: 123 TSPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIG 182

Query: 184 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 243
           VRVPD +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRA
Sbjct: 183 VRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRA 242

Query: 244 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLE 277
           GSTI+DLT+ G +KIIR GSA++ T+A LE+Y L E
Sbjct: 243 GSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEE 276

[Close]

BLAST of CSPI01G12530 vs. TAIR10
Match: AT3G01920.1 (AT3G01920.1 DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10
Identity = 62/210 (29.52%), Postives = 93/210 (44.29%), Query Frame = 1


Query: 77  QEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITR 136
           Q   D LK G V  +PTDT+Y ++CD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 137 FAVTDHLPSG----------LLDSLLPGPVTVVLKR-----------GESSVLDKSLNPG 196
           F  T   P G           +   LPGP T +L             G +SV   S    
Sbjct: 144 F--TMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASRK-- 203

Query: 197 LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVY 256
             ++GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V 
Sbjct: 204 --NVGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVV 263

Query: 257 DGGVLPAGRAGSTIIDLTEQGTF-KIIRAG 260
           DGG+  A    STI+D+T  G + K+IR G
Sbjct: 264 DGGIRVA--EPSTIVDMT--GPYPKVIREG 281

[Close]

BLAST of CSPI01G12530 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 8.0e-154
Identity = 280/281 (99.64%), Postives = 281/281 (100.00%), Query Frame = 1


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGL+CDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CSPI01G12530 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 534.3 bits (1375), Expect = 1.3e-148
Identity = 269/281 (95.73%), Postives = 277/281 (98.58%), Query Frame = 1


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTF TFPSS LGSSNYGIVSFLQRNRGSRVSFLKT+WSLEKCCM 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGL+CDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTI+DLTE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 241 GSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of CSPI01G12530 vs. NCBI nr
Match: gi|590590392|ref|XP_007016721.1| (DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao])

HSP 1 Score: 363.6 bits (932), Expect = 3.1e-97
Identity = 184/255 (72.16%), Postives = 216/255 (84.71%), Query Frame = 1


Query: 27  GSSNYGIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKA 86
           G    G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKA
Sbjct: 72  GVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKA 131

Query: 87  GKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 146
           GKVIAVPTDTLYG +CDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP 
Sbjct: 132 GKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPY 191

Query: 147 GLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSA 206
           GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSA
Sbjct: 192 GLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSA 251

Query: 207 NLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQT 266
           NLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T
Sbjct: 252 NLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEET 311

Query: 267 IATLERYSLLEAAAT 281
           +A LE+YSLLE AA+
Sbjct: 312 VAILEKYSLLEEAAS 326

[Close]

BLAST of CSPI01G12530 vs. NCBI nr
Match: gi|590590395|ref|XP_007016722.1| (DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao])

HSP 1 Score: 363.2 bits (931), Expect = 4.0e-97
Identity = 183/250 (73.20%), Postives = 215/250 (86.00%), Query Frame = 1


Query: 32  GIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIA 91
           G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGKVIA
Sbjct: 27  GFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGKVIA 86

Query: 92  VPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDS 151
           VPTDTLYG +CDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GLLDS
Sbjct: 87  VPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGLLDS 146

Query: 152 LLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQ 211
           LLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANLSGQ
Sbjct: 147 LLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANLSGQ 206

Query: 212 PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLE 271
           PSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T+A LE
Sbjct: 207 PSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVAILE 266

Query: 272 RYSLLEAAAT 281
           +YSLLE AA+
Sbjct: 267 KYSLLEEAAS 276

[Close]

BLAST of CSPI01G12530 vs. NCBI nr
Match: gi|225435305|ref|XP_002285123.1| (PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vinifera])

HSP 1 Score: 361.3 bits (926), Expect = 1.5e-96
Identity = 186/276 (67.39%), Postives = 225/276 (81.52%), Query Frame = 1


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVEN 63
           +PAK A+  SL+ TF + P   LG + +G V  L++NR  RVSF K   ++      + +
Sbjct: 3   IPAKFAER-SLLLTFRS-PLRALGVAKFGFVQILKQNRRFRVSFPKKMEAV------MGS 62

Query: 64  CLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLSCDACSAEAVHRIYEIKGRKLTSP 123
            L  +RPA++A A+EA +A+KAGKVIAVPTDTLYG +CDACS+EAV+RIYEIKGRK TSP
Sbjct: 63  ELGVVRPATDAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSP 122

Query: 124 LAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRV 183
           LAICVGDV DI RFAVTDHLP GLL SLLPGPVTVVL+RGE S+++KSLNPGLDSIGVRV
Sbjct: 123 LAICVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRV 182

Query: 184 PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGST 243
           PD DFIR+I+  SETALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST
Sbjct: 183 PDCDFIRVIAHGSETALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGST 242

Query: 244 IIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAA 280
           ++DL+  G +KI+R GSA E+T+A LER+SL+  AA
Sbjct: 243 VVDLSRLGKYKILRPGSAMEETVAILERHSLMPEAA 270

The following BLAST results are available for this feature:

BLAST of CSPI01G12530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YRDC_BOVIN	9.4e-46	48.02	YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1	[more]
YRDC_HUMAN	2.0e-43	46.63	YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1	[more]
YRDC_RAT	2.2e-42	46.31	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 ...	[more]
YRDC_MOUSE	2.8e-42	46.31	YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1	[more]
TSAC_METJA	5.6e-22	36.22	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of CSPI01G12530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP4_CUCSA	5.6e-154	99.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1	[more]
A0A061GWW4_THECC	2.2e-97	72.16	DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_04...	[more]
A0A061GXZ3_THECC	2.8e-97	73.20	DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma caca...	[more]
D7SKX9_VITVI	1.1e-96	67.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02920 PE=4 SV=...	[more]
A0A059D561_EUCGR	2.2e-94	66.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1	[more]

BLAST of CSPI01G12530 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60590.2	7.8e-91	63.04	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	3.0e-10	29.52	DHBP synthase RibB-like alpha/beta domain	[more]

BLAST of CSPI01G12530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462123\|ref\|XP_004148791.1\|	8.0e-154	99.64	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus]	[more]
gi\|659130663\|ref\|XP_008465284.1\|	1.3e-148	95.73	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]
gi\|590590392\|ref\|XP_007016721.1\|	3.1e-97	72.16	DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao]	[more]
gi\|590590395\|ref\|XP_007016722.1\|	4.0e-97	73.20	DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao]	[more]
gi\|225435305\|ref\|XP_002285123.1\|	1.5e-96	67.39	PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006070	YrdC-like_dom
IPR017945	DHBP_synth_RibB-like_a/b_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0002949	tRNA threonylcarbamoyladenosine modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12530.1	CSPI01G12530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 82..259 score: 6.6
IPR006070	YrdC-like domain	TIGRFAMs	TIGR00057	TIGR00057	coord: 75..266 score: 2.2
IPR006070	YrdC-like domain	PROFILE	PS51163	YRDC	coord: 73..261 score: 25
IPR017945	DHBP synthase RibB-like alpha/beta domain	GENE3D	G3DSA:3.90.870.10		coord: 76..268 score: 8.7
IPR017945	DHBP synthase RibB-like alpha/beta domain	unknown	SSF55821	YrdC/RibB	coord: 74..261 score: 8.85
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 69..270 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G12530	Cla008297	Watermelon (97103) v1	cpiwmB012
CSPI01G12530	Csa1G077210	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12530	MELO3C026847	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G12530	ClCG03G002070	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G12530	Lsi02G014090	Bottle gourd (USVL1VR-Ls)	cpilsiB023
CSPI01G12530	MELO3C026847.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G12530	CsaV3_1G012730	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12530	Cla97C03G053070	Watermelon (97103) v2	cpiwmbB034
CSPI01G12530	Bhi08G000299	Wax gourd	cpiwgoB042
CSPI01G12530	Cucsa.127080	Cucumber (Gy14) v1	cgycpiB172
CSPI01G12530	CmaCh01G005550	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G12530	CmoCh01G005820	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G12530	Cp4.1LG02g13010	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G12530	CsGy1G012560	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12530	Carg12328	Silver-seed gourd	carcpiB0477

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None