CsGy1G012560 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Putative threonylcarbamoyl-AMP synthase
Location	Chr1 : 7981366 .. 7986265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAAAAAAAAACTCGTCGACCCAACCCGACTTCTTTTAGTTATTTTGGGTTGGGTTCGACCTTTGCTTATTGAACCAATAGGTTCCTCCTCAGTCGTCTTTCTTCTCCATCTCTACTCTAAGGCAACTCGGCGCCGGCCGTCATCGCTCAATTGCTCAGTGCAATTGTTTTGATTTCGAATCTTTCACAATCCCAATCCCAAGTTTCCAAATACCTTCTTCTCTCTCTTCAAAACCCCGCTTGGGATTGCTACAGACCACCATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCGTTTCAATCTTTCATCCCCTTTATCCTTTTGTATGTTTATTGTAGGATTGAAACATGAATTGACATAAATTATTATATTTTAGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTGTGCAATCGTCTTATTTTGTGAGTTTTGATTTTTTTTGGTGTGGAAGTTGATGTTACAACACCTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAATGAGGATAGTGCTTTATAAATAGTAGTACAATCTTTCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGCTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCGCTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGGCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAATATTGGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTTGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTTATTTTTTATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTTCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTTAAAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTACATCTCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTAGAGAGGTTTTTTTTTTTTTTTTTTTTTTTGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAACAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTATTTAATTCAAAATGTTCTGTCAAAAGTGTCAACTTTTATAATGCAATGACTTAAAGTCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACGTTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATTTAAGATAAGGGACTAAAAATGCCTTTTGTAACCAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAATAAGATATTAATTTTTCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTCCTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTTAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTTCTAAGATGACTTATTTTCAAAATATCAAAACCCAAACTAGATCAGGTCTAGATTAAGTCTTGCTTTACCATTTCCTTTTTAACCACCATATTTCCCACTTTCACTGAAGTTCTTGATTTGATTTGTATGATTATGTAACATTTGGATACGTATTATGATGAGGAATTCACTAATACTTGGAATGAGAAGAACTTTCAAATTTGCCTAGGACTTGTAGTGCAGTGAAGAAAATTACATACAAAATATGGTGGGATGGATAGGGTATTAACATTGTTGCATCGAGAAAGATATTTTAACTTATAATGAATGTGTTTTATAGTAGAGTTAGGTTGAATTGGTAATAATTGTTTGTGTTTGGAGAGTTAAAGGGGATTGTTTGTGTTTGGAGAGTTTAAAGTGGATGAGTAAAAAATGGAGAGTTAAGTTGATAGAGTAAAAAAAGTCTCATTTTCAACTTAAGATATCAACTTAAAAACTTTGTATATATTTTACAATTTCATGCATTTCACCATTTTAAATGATCGAGGTAGACAAAATACTAATTTAATTTTTATAATTTTAACAAAATTACTATATACTTTAACATTTCACATTTGAACATCATAATTGTTTTTAATATTATTGTATATAAATTTTGAATGTTCATTTTTTTCTCTTTACTTCTATACTTAGATGGGTTGTATCAACTTTAACCTTATTTTTTTTTATTTCATTAATTTAAATTTCAAACTTGGC

mRNA sequence

GATGAAAAAAAAACTCGTCGACCCAACCCGACTTCTTTTAGTTATTTTGGGTTGGGTTCGACCTTTGCTTATTGAACCAATAGGTTCCTCCTCAGTCGTCTTTCTTCTCCATCTCTACTCTAAGGCAACTCGGCGCCGGCCGTCATCGCTCAATTGCTCAGTGCAATTGTTTTGATTTCGAATCTTTCACAATCCCAATCCCAAGTTTCCAAATACCTTCTTCTCTCTCTTCAAAACCCCGCTTGGGATTGCTACAGACCACCATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTTAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTTCTAAGATGACTTATTTTCAAAATATCAAAACCCAAACTAGATCAGGTCTAGATTAAGTCTTGCTTTACCATTTCCTTTTTAACCACCATATTTCCCACTTTCACTGAAGTTCTTGATTTGATTTGTATGATTATGTAACATTTGGATACGTATTATGATGAGGAATTCACTAATACTTGGAATGAGAAGAACTTTCAAATTTGCCTAGGACTTGTAGTGCAGTGAAGAAAATTACATACAAAATATGGTGGGATGGATAGGGTATTAACATTGTTGCATCGAGAAAGATATTTTAACTTATAATGAATGTGTTTTATAGTAGAGTTAGGTTGAATTGGTAATAATTGTTTGTGTTTGGAGAGTTAAAGGGGATTGTTTGTGTTTGGAGAGTTTAAAGTGGATGAGTAAAAAATGGAGAGTTAAGTTGATAGAGTAAAAAAAGTCTCATTTTCAACTTAAGATATCAACTTAAAAACTTTGTATATATTTTACAATTTCATGCATTTCACCATTTTAAATGATCGAGGTAGACAAAATACTAATTTAATTTTTATAATTTTAACAAAATTACTATATACTTTAACATTTCACATTTGAACATCATAATTGTTTTTAATATTATTGTATATAAATTTTGAATGTTCATTTTTTTCTCTTTACTTCTATACTTAGATGGGTTGTATCAACTTTAACCTTATTTTTTTTTATTTCATTAATTTAAATTTCAAACTTGGC

Coding sequence (CDS)

ATGAACACACTTCCGGCGAAAATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Protein sequence

MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI

Homology

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BLAST of CsGy1G012560 vs. NCBI nr
Match: XP_004148791.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN64719.1 hypothetical protein Csa_1G077210 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 1.5e-153
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CsGy1G012560 vs. NCBI nr
Match: XP_008465284.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 534.3 bits (1375), Expect = 2.6e-148
Identity = 270/281 (96.09%), Postives = 277/281 (98.58%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTF TFPSS LGSSNYGIVSFLQRNRGSRVSFLKT+WSLEKCCM 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTI+DLTE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 241 GSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of CsGy1G012560 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.9 bits (1265), Expect = 1.5e-135
Identity = 248/278 (89.21%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKM + LSLIRTF TFPSSQLG+ NYG VSFL  NRGSR++F KT WSLEKC MR
Sbjct: 6   MNTLPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 66  VENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 245

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 279
           GSTIIDLT++GTFKIIRAGSA+EQT+ATL+RYSLLE A
Sbjct: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLKRYSLLEDA 283

[Close]

BLAST of CsGy1G012560 vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 488.8 bits (1257), Expect = 1.2e-134
Identity = 246/278 (88.49%), Postives = 261/278 (93.88%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNT PAKM + LSLIRTF TFPSSQLG+ NYG VSFL  NRGSR++F KT WSLEKC MR
Sbjct: 6   MNTFPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLEKCSMR 65

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 66  VENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRS TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 186 VRVPDADFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 245

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 279
           GSTIIDLT++G FKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 246 GSTIIDLTKRGMFKIIRAGSAKEQTVATLERYSLLEEA 283

[Close]

BLAST of CsGy1G012560 vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 486.5 bits (1251), Expect = 6.1e-134
Identity = 244/278 (87.77%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKM + LS+IRTF TFPSSQLG+ +YG VSFL  NRGSR++F KT WSLEKC MR
Sbjct: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKL
Sbjct: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 125

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIG
Sbjct: 126 TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 185

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRA
Sbjct: 186 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 245

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 279
           GSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 246 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 283

[Close]

BLAST of CsGy1G012560 vs. TAIR10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-90
Identity = 174/274 (63.50%), Postives = 209/274 (76.28%), Query Frame = 0


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTN-WSLEKC--CMR 63
           L  ++A+ L  I    + P  + G S     S   ++R  R    K   WSLE+   C+ 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 64  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 123
            ++CL  + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACDACS EAV RIYEIKGRKL
Sbjct: 63  SKSCL--VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKL 122

Query: 124 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 183
           TSPLAICVGDV DI R A T HLP GLLDSLLPGPVT+VL+RGESS+L+KSLNPG+ +IG
Sbjct: 123 TSPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIG 182

Query: 184 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 243
           VRVPD +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRA
Sbjct: 183 VRVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRA 242

Query: 244 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSL 275
           GSTI+DLT+ G +KIIR GSA++ T+A LE+Y L
Sbjct: 243 GSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLL 274

[Close]

BLAST of CsGy1G012560 vs. TAIR10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 63/210 (30.00%), Postives = 93/210 (44.29%), Query Frame = 0


Query: 77  QEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITR 136
           Q   D LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 137 FAVTDHLPSG----------LLDSLLPGPVTVVLKR-----------GESSVLDKSLNPG 196
           F  T   P G           +   LPGP T +L             G +SV   S    
Sbjct: 144 F--TMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASRK-- 203

Query: 197 LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVY 256
             ++GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V 
Sbjct: 204 --NVGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVV 263

Query: 257 DGGVLPAGRAGSTIIDLTEQGTF-KIIRAG 260
           DGG+  A    STI+D+T  G + K+IR G
Sbjct: 264 DGGIRVA--EPSTIVDMT--GPYPKVIREG 281

[Close]

BLAST of CsGy1G012560 vs. Swiss-Prot
Match: sp|Q0VC80|YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.5e-46
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 79  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGLAC A  +EA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 259 KIIRAGSAEEQTIATLERYSLL 276
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of CsGy1G012560 vs. Swiss-Prot
Match: sp|Q86U90|YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-43
Identity = 98/208 (47.12%), Postives = 135/208 (64.90%), Query Frame = 0


Query: 79  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G F
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 259 KIIRAGSAEEQTIATL-ERYSLLEAAAT 281
            IIR G A E T A L ++Y LL + A+
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

[Close]

BLAST of CsGy1G012560 vs. Swiss-Prot
Match: sp|Q499R4|YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-42
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 79  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 259 KIIRAGSAEEQTIATLE-RYSLL 276
            IIR+G A E T A L+ +Y LL
Sbjct: 254 GIIRSGCALENTTAILQGKYGLL 273

[Close]

BLAST of CsGy1G012560 vs. Swiss-Prot
Match: sp|Q3U5F4|YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-42
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 79  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 138
           A   L+AG V+AVPTDTLYGLAC A S+ A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 139 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 198
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 199 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 258
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 259 KIIRAGSAEEQTIATL-ERYSLL 276
            IIR G A E T + L ++Y LL
Sbjct: 254 GIIRPGCALENTTSILQQKYGLL 273

[Close]

BLAST of CsGy1G012560 vs. Swiss-Prot
Match: sp|Q60369|TSAC_METJA (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 86  GKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 145
           GK++   TDTLYG++ +A + +AV ++Y IK R+   PL+ICV D ++I ++A  + L  
Sbjct: 32  GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91

Query: 146 GLLDSLLPGPVTVVLKR--GESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALT 205
            ++D  LPGP+T++LK+  G   ++ K      D IG+R+PD   IR +   S   L  T
Sbjct: 92  KIIDKFLPGPLTIILKKKPGIPDIVAK------DYIGIRIPDEPIIREL---SIVPLTTT 151

Query: 206 SANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAE 265
           SAN+SG+ S   V++ +  + +   YV D G     +  STII + E      IR G   
Sbjct: 152 SANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP-STIIKI-EDDKIISIREGVIP 205

Query: 266 EQTIA 268
            Q +A
Sbjct: 212 IQKLA 205

[Close]

BLAST of CsGy1G012560 vs. TrEMBL
Match: tr|A0A0A0LUP4|A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.0e-153
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CsGy1G012560 vs. TrEMBL
Match: tr|A0A1S3CNI2|A0A1S3CNI2_CUCME (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 1.7e-148
Identity = 270/281 (96.09%), Postives = 277/281 (98.58%), Query Frame = 0


Query: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60
           MNTLPAKMADSLSLIRTF TFPSS LGSSNYGIVSFLQRNRGSRVSFLKT+WSLEKCCM 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120
           VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKL 120

Query: 121 TSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180
           TSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG
Sbjct: 121 TSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIG 180

Query: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240
           VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA
Sbjct: 181 VRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRA 240

Query: 241 GSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 282
           GSTI+DLTE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 241 GSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of CsGy1G012560 vs. TrEMBL
Match: tr|A0A061GWW4|A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 4.0e-97
Identity = 185/255 (72.55%), Postives = 216/255 (84.71%), Query Frame = 0


Query: 27  GSSNYGIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKA 86
           G    G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKA
Sbjct: 72  GVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKA 131

Query: 87  GKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 146
           GKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP 
Sbjct: 132 GKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPY 191

Query: 147 GLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSA 206
           GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSA
Sbjct: 192 GLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSA 251

Query: 207 NLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQT 266
           NLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T
Sbjct: 252 NLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEET 311

Query: 267 IATLERYSLLEAAAT 281
           +A LE+YSLLE AA+
Sbjct: 312 VAILEKYSLLEEAAS 326

[Close]

BLAST of CsGy1G012560 vs. TrEMBL
Match: tr|A0A061GXZ3|A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 5.2e-97
Identity = 184/250 (73.60%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 32  GIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIA 91
           G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGKVIA
Sbjct: 27  GFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGKVIA 86

Query: 92  VPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDS 151
           VPTDTLYG ACDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GLLDS
Sbjct: 87  VPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGLLDS 146

Query: 152 LLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQ 211
           LLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANLSGQ
Sbjct: 147 LLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANLSGQ 206

Query: 212 PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLE 271
           PSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T+A LE
Sbjct: 207 PSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVAILE 266

Query: 272 RYSLLEAAAT 281
           +YSLLE AA+
Sbjct: 267 KYSLLEEAAS 276

[Close]

BLAST of CsGy1G012560 vs. TrEMBL
Match: tr|D7SKX9|D7SKX9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02920 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.6e-96
Identity = 188/276 (68.12%), Postives = 224/276 (81.16%), Query Frame = 0


Query: 4   LPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVEN 63
           +PAK A+  SL+ TF + P   LG + +G V  L++NR  RVSF K      K    + +
Sbjct: 3   IPAKFAER-SLLLTFRS-PLRALGVAKFGFVQILKQNRRFRVSFPK------KMEAVMGS 62

Query: 64  CLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSP 123
            L  +RPA++A A+EA +A+KAGKVIAVPTDTLYG ACDACS+EAV+RIYEIKGRK TSP
Sbjct: 63  ELGVVRPATDAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSP 122

Query: 124 LAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRV 183
           LAICVGDV DI RFAVTDHLP GLL SLLPGPVTVVL+RGE S+++KSLNPGLDSIGVRV
Sbjct: 123 LAICVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRV 182

Query: 184 PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGST 243
           PD DFIR+I+  SETALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST
Sbjct: 183 PDCDFIRVIAHGSETALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGST 242

Query: 244 IIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAA 280
           ++DL+  G +KI+R GSA E+T+A LER+SL+  AA
Sbjct: 243 VVDLSRLGKYKILRPGSAMEETVAILERHSLMPEAA 270

The following BLAST results are available for this feature:

BLAST of CsGy1G012560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148791.1	1.5e-153	100.00	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN6...	[more]
XP_008465284.1	2.6e-148	96.09	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]
XP_023521571.1	1.5e-135	89.21	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	1.2e-134	88.49	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_022948702.1	6.1e-134	87.77	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]

BLAST of CsGy1G012560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60590.2	1.0e-90	63.50	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	1.4e-10	30.00	DHBP synthase RibB-like alpha/beta domain	[more]

BLAST of CsGy1G012560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0VC80\|YRDC_BOVIN	9.5e-46	48.51	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
sp\|Q86U90\|YRDC_HUMAN	2.6e-43	47.12	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
sp\|Q499R4\|YRDC_RAT	2.2e-42	46.80	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
sp\|Q3U5F4\|YRDC_MOUSE	2.9e-42	46.80	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
sp\|Q60369\|TSAC_METJA	2.1e-21	35.68	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of CsGy1G012560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP4\|A0A0A0LUP4_CUCSA	1.0e-153	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1	[more]
tr\|A0A1S3CNI2\|A0A1S3CNI2_CUCME	1.7e-148	96.09	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A061GWW4\|A0A061GWW4_THECC	4.0e-97	72.55	DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao OX=3641 G...	[more]
tr\|A0A061GXZ3\|A0A061GXZ3_THECC	5.2e-97	73.60	DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma caca...	[more]
tr\|D7SKX9\|D7SKX9_VITVI	2.6e-96	68.12	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02920 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017945	DHBP_synth_RibB-like_a/b_dom
IPR006070	YrdC-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0002949	tRNA threonylcarbamoyladenosine modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012560.1	CsGy1G012560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 82..259 e-value: 1.2E-46 score: 158.3
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 75..266 e-value: 3.5E-43 score: 145.1
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 73..261 score: 25.872
None	No IPR available	GENE3D	G3DSA:3.90.870.10		coord: 66..271 e-value: 4.3E-55 score: 187.8
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 58..273
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 58..273
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	SSF55821	YrdC/RibB	coord: 74..261

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012560	Cla008297	Watermelon (97103) v1	cgybwmB012
CsGy1G012560	Csa1G077210	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012560	MELO3C026847	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012560	ClCG03G002070	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012560	CSPI01G12530	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012560	CmaCh01G005550	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012560	CmoCh01G005820	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G012560	Lsi02G014090	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012560	Cp4.1LG02g13010	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012560	MELO3C026847.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012560	CsaV3_1G012730	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012560	Cla97C03G053070	Watermelon (97103) v2	cgybwmbB034
CsGy1G012560	Bhi08G000299	Wax gourd	cgybwgoB039
CsGy1G012560	Carg12328	Silver-seed gourd	carcgybB0449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012560	Cucurbita pepo (Zucchini)	cgybcpeB084