Carg12328 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12328
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	yrdC domain-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_074 : 339265 .. 342297 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGGTATGCATTCCTTTTAATGGGTTGTTTCTGTAATTTCCTTTTCTATTTTGTGAGTTTCTTTTCTTTTTGCCAACTATGAAGGAGTTTTATCAATTGTAATATAGATTTTTCTTAAGATGAAGTCTTCATGGTAGGTGTAGGTGGGAAAGAACCTCCGATTCTTCCAAAATTTCTTAAAAATAGAGGATGGTCTTTGTGATCTTGTTTAGTATAAAGGTTTTTGGTTAAAGATCTTGGTTGAGTCAGGAGTACTGGTCGTATGAGCGTGGGTGGCACATGGTTGTTTGACTCTCGCTAGTCGATGTTTGCCTTTCATTGAGATGAGACGCCTTATGAATTCTCCCTATTCAACGAAGAGACAATTGTTTGACCGCACACGATGTTTTTGGCTTAGCTTCACACGATGATTTTGCACCCCTGATTGTGGCGAGTGGGAATAGTTGATCGTTGCCCAAGCTCGTTTTAGCGTATGACGCATGAGTGTCTCTCATGGTTGCTAGGATCGAGAGACTTTTTCGAGTTGGCAGATAGTCTTCTGGGAGAAATGTGGTGGTAAGGGAGAGAACTAGGGGGAGGTCATCTTCTTTAGTACTGTTACTAGGTGGCAGTGGCGTGAAGGATCGCTTTGCTACAATTTAGTTTCATGCCAAGCAAGGGGCTCTTCTTCAGGAAAAGATGTCTTACAGAGGCTTCGGTACGGGTGTAGCTAGTTTTAAATACTAAGGGAAAATGTTGCAGAGTAGCTTGGGAGATTCTTCATGGGAAGGTCTTCGTTCTTTATTTCACAGGCACGGACGAAAACGAGTGGATAATTTTCAAGGAGAAACTAGGAGTACTTTTGTTGCGGAGTTTGAACTTTCCTCCACTCTTTTAATGTCCTTACCCTTCTCTCATCGCTTGGACATCTTTTTCTTTTGAGAAGATGGTTAAGGAATCTGTTGCTTTGCAAGTGGAAGTGTGAATGTTGAAGGAGGGTATGGTCGAGTTTATTTTTGATACTAGAAGAGTGGTTTTGGTGCTAAGTGAACTCTCTTCTAATTCTTGATCTTTGATTAATAATGGATTGTGAGAAGTCTGAATGTTTGGTAGAATAATTGCATTACTGATTAGATTCTGAGGAAAATACAACATAGTGATATGATGTTATAAGATTGAGGGATAATTATCAAATTCATCATTGTGTTAAAACATAATTGTTTCCACGCTCTTCAGGATCTAAAAATGGTTATCAATTATGCATCCTTTTAGAATAATTTTTCAATCTTTTAAAACGCTCTTCTTTCCTAGTTTGGAGGTGTTATCCTGTCTGTGAAATTATATGCACAAATTAACCATTTCTAAACTTAATAATGTTGCACTCTCCATTTATGTAACTGTGGTTTCTGTTGGGATTAATTTTGCAGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGTTTGTACTACAAATCTCTTTCTTTTGATAATGTAACCTTGACGAGCATTCTTTGATTGAAGAAAGTAGACGAGTAACTATTTTTTTGGGTAGCGTACTCGGCTTCTGTTGGGCGGGTTGAAACAATCTTTTGGATATTCTGTTCTTACGTTGATTAAACCGTTTTAATTTTTTTTAAATGCTAAAGAGTACTCTGGGAGGGGTCCTCTCCCTATGGAAACAAGATATTAATTTGACATATCCCTTATTAATGGATTGGACTGTCACACCTACATATCCAAGAATATGTTCATTTAGATTTTAGTCTCTAACCTTCCTGTAGTCTGAGTTTTTTACATTTAGATTTTTTGTAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGGTATGTTTGTTCTTGTGATTCTTCTATTTTCGTCGAATGACTCAAACAATGGTGTGTATCATAATAATGTTGATTCTACATTTGCAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATAT

mRNA sequence

TAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATAT

Coding sequence (CDS)

ATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGA

Protein sequence

MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA

Homology

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BLAST of Carg12328 vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 438.7 bits (1127), Expect = 1.2e-119
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 244 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

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BLAST of Carg12328 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 2.4e-117
Identity = 219/224 (97.77%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRGTFKIIRAGSAKEQTVATL+RYSLLE+ADSAA
Sbjct: 244 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLKRYSLLEDADSAA 287

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BLAST of Carg12328 vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 5.4e-117
Identity = 219/224 (97.77%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSG+PSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVLPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRG FKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 244 RAGSTIIDLTKRGMFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

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BLAST of Carg12328 vs. NCBI nr
Match: XP_004148791.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN64719.1 hypothetical protein Csa_1G077210 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 7.1e-109
Identity = 202/220 (91.82%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 278

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BLAST of Carg12328 vs. NCBI nr
Match: XP_008465284.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 394.4 bits (1012), Expect = 2.5e-106
Identity = 196/220 (89.09%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           M VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MPVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 239 RAGSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

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BLAST of Carg12328 vs. TAIR10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-91
Identity = 164/207 (79.23%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 10  LRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAIC 69
           + PA+EA+AQEAIEA+K+ KVIAVPTDTLYG ACDACS EAV+RIYEIKGRKLTSPLAIC
Sbjct: 68  VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAIC 127

Query: 70  VGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDAD 129
           VGDV DI R A   HLPHGLLDSLLPGPVT+VL+RGESSILEKSLNPG+ +IGVRVPD +
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCE 187

Query: 130 FIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDL 189
           FIR +SR SG+ LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRAGSTI+DL
Sbjct: 188 FIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTIVDL 247

Query: 190 TKRGTFKIIRAGSAKEQTVATLERYSL 217
           TK G +KIIR GSAK+ TVA LE+Y L
Sbjct: 248 TKVGKYKIIRPGSAKQATVAILEKYLL 274

[Close]

BLAST of Carg12328 vs. TAIR10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-11
Identity = 61/207 (29.47%), Postives = 93/207 (44.93%), Query Frame = 0


Query: 19  QEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITR 78
           Q  I+ LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 79  FAVADHLPHG----------LLDSLLPGPVTVVLKRGESSILEKSLNPGLES-------- 138
           F +    P G           +   LPGP T +L      + ++ +  G  S        
Sbjct: 144 FTMG--FPRGDGHGHANVFRAVKQCLPGPYTFIL-TASKELPKQCVGYGTTSVKYASRKN 203

Query: 139 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLW-----QHCAYVYDGG 198
           +GVR+ D    + I ++    L  TS  + G   +  + D   +      +   +V DGG
Sbjct: 204 VGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 263

Query: 199 ILPAGRAGSTIIDLTKRGTF-KIIRAG 202
           I  A    STI+D+T  G + K+IR G
Sbjct: 264 IRVA--EPSTIVDMT--GPYPKVIREG 281

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BLAST of Carg12328 vs. Swiss-Prot
Match: sp|Q0VC80|YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.2e-48
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A  SEA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  G 
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 201 KIIRAGSAKEQTVATLERYSLL 218
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of Carg12328 vs. Swiss-Prot
Match: sp|Q3U5F4|YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.4e-45
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A SS A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAKEQTVATL-ERYSLLEEADSAA 225
            IIR G A E T + L ++Y LL    S +
Sbjct: 254 GIIRPGCALENTTSILQQKYGLLPSQGSCS 280

[Close]

BLAST of Carg12328 vs. Swiss-Prot
Match: sp|Q499R4|YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A  S A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAKEQTVATLE-RYSLLEEADSAA 225
            IIR+G A E T A L+ +Y LL    S +
Sbjct: 254 GIIRSGCALENTTAILQGKYGLLPSQGSCS 280

[Close]

BLAST of Carg12328 vs. Swiss-Prot
Match: sp|Q86U90|YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 100/221 (45.25%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 6   SLQALRPASEAFAQ---EAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 65
           ++QA  P    + +    A+  L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR  
Sbjct: 55  AVQAASPERAGWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114

Query: 66  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 125
             PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G
Sbjct: 115 AKPLAVCLGRVADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVG 174

Query: 126 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL----- 185
           +R+PD  F++ +++     LALTSANLS Q SS+ V +F++LW   + V DGG +     
Sbjct: 175 IRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQS 234

Query: 186 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATL-ERYSLL 218
           P  R GST++DL+  G F IIR G A E T A L ++Y LL
Sbjct: 235 PECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLL 272

[Close]

BLAST of Carg12328 vs. Swiss-Prot
Match: sp|Q60369|TSAC_METJA (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 62/182 (34.07%), Postives = 103/182 (56.59%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKA----GKVIAVPTDTLYGLACDACSSEAVNRIYE 60
           M ++N +  +   +E   ++ +E LK     GK++   TDTLYG++ +A + +AV ++Y 
Sbjct: 1   MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYN 60

Query: 61  IKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKR--GESSILEKSL 120
           IK R+   PL+ICV D ++I ++A  + L   ++D  LPGP+T++LK+  G   I+ K  
Sbjct: 61  IKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAK-- 120

Query: 121 NPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFE-NLWQHCAYVYD 176
               + IG+R+PD   IR +S      L  TSAN+SG+ S   V + +  + +   YV D
Sbjct: 121 ----DYIGIRIPDEPIIRELSI---VPLTTTSANISGKESPTTVDEIDKEVLKKVDYVID 173

[Close]

BLAST of Carg12328 vs. TrEMBL
Match: tr|A0A0A0LUP4|A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 4.7e-109
Identity = 202/220 (91.82%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 278

[Close]

BLAST of Carg12328 vs. TrEMBL
Match: tr|A0A1S3CNI2|A0A1S3CNI2_CUCME (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.7e-106
Identity = 196/220 (89.09%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           M VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MPVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 239 RAGSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

[Close]

BLAST of Carg12328 vs. TrEMBL
Match: tr|A0A0D2VKK6|A0A0D2VKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G266600 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.6e-96
Identity = 177/217 (81.57%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAGKVIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 12  VENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 71

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSILEKSLNPGL+SIG
Sbjct: 72  TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSLNPGLDSIG 131

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 132 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 191

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 192 GSTVVDLTKPGKYRILRPGSAKEETVAILENYSLLEE 228

[Close]

BLAST of Carg12328 vs. TrEMBL
Match: tr|A0A2P5S6M2|A0A2P5S6M2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08234 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 4.6e-96
Identity = 176/217 (81.11%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAGKVIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 12  VENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 71

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSIL+KSLNPGL+SIG
Sbjct: 72  TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILDKSLNPGLDSIG 131

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 132 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 191

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 192 GSTVVDLTKPGKYQILRPGSAKEETVAILENYSLLEE 228

[Close]

BLAST of Carg12328 vs. TrEMBL
Match: tr|A0A1U8MBI5|A0A1U8MBI5_GOSHI (yrdC domain-containing protein, mitochondrial-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107936069 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.9e-96
Identity = 176/217 (81.11%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAG+VIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 57  VENKLELIRSATESNADEAIEALKAGEVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 116

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSILEKSLNPGL+SIG
Sbjct: 117 TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSLNPGLDSIG 176

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 177 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 236

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 237 GSTVVDLTKPGKYQILRPGSAKEETVAILENYSLLEE 273

The following BLAST results are available for this feature:

BLAST of Carg12328 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948702.1	1.2e-119	100.00	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]
XP_023521571.1	2.4e-117	97.77	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	5.4e-117	97.77	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_004148791.1	7.1e-109	91.82	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN6...	[more]
XP_008465284.1	2.5e-106	89.09	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]

BLAST of Carg12328 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60590.2	1.3e-91	79.23	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	3.7e-11	29.47	DHBP synthase RibB-like alpha/beta domain	[more]

BLAST of Carg12328 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0VC80\|YRDC_BOVIN	6.2e-48	49.50	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
sp\|Q3U5F4\|YRDC_MOUSE	8.4e-45	46.67	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
sp\|Q499R4\|YRDC_RAT	1.1e-44	46.67	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
sp\|Q86U90\|YRDC_HUMAN	1.6e-43	45.25	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
sp\|Q60369\|TSAC_METJA	3.8e-21	34.07	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of Carg12328 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP4\|A0A0A0LUP4_CUCSA	4.7e-109	91.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1	[more]
tr\|A0A1S3CNI2\|A0A1S3CNI2_CUCME	1.7e-106	89.09	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A0D2VKK6\|A0A0D2VKK6_GOSRA	1.6e-96	81.57	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G266600 PE=4 ...	[more]
tr\|A0A2P5S6M2\|A0A2P5S6M2_GOSBA	4.6e-96	81.11	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08234 PE=4 SV...	[more]
tr\|A0A1U8MBI5\|A0A1U8MBI5_GOSHI	5.9e-96	81.11	yrdC domain-containing protein, mitochondrial-like isoform X1 OS=Gossypium hirsu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017945	DHBP_synth_RibB-like_a/b_dom
IPR006070	YrdC-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12328-RA	Carg12328-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.870.10		coord: 7..212 e-value: 9.7E-56 score: 190.0
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 3..216
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 3..216
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 23..201 e-value: 4.7E-47 score: 159.7
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 17..207 e-value: 6.5E-44 score: 147.5
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 15..203 score: 26.345
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	SSF55821	YrdC/RibB	coord: 17..203

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12328	Cla008297	Watermelon (97103) v1	carwmB0440
Carg12328	Csa1G077210	Cucumber (Chinese Long) v2	carcuB0472
Carg12328	MELO3C026847	Melon (DHL92) v3.5.1	carmeB0449
Carg12328	ClCG03G002070	Watermelon (Charleston Gray)	carwcgB0436
Carg12328	CSPI01G12530	Wild cucumber (PI 183967)	carcpiB0477
Carg12328	CmaCh01G005550	Cucurbita maxima (Rimu)	carcmaB0613
Carg12328	CmoCh01G005820	Cucurbita moschata (Rifu)	carcmoB0596
Carg12328	Cp4.1LG02g13010	Cucurbita pepo (Zucchini)	carcpeB0622
Carg12328	CsGy1G012560	Cucumber (Gy14) v2	carcgybB0449
Carg12328	MELO3C026847.2	Melon (DHL92) v3.6.1	carmedB0451
Carg12328	CsaV3_1G012730	Cucumber (Chinese Long) v3	carcucB0474
Carg12328	Cla97C03G053070	Watermelon (97103) v2	carwmbB0467
Carg12328	Bhi08G000299	Wax gourd	carwgoB0537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12328	Silver-seed gourd	carcarB332
Carg12328	Silver-seed gourd	carcarB333
Carg12328	Silver-seed gourd	carcarB353
Carg12328	Silver-seed gourd	carcarB354
Carg12328	Silver-seed gourd	carcarB447
Carg12328	Cucurbita maxima (Rimu)	carcmaB0610
Carg12328	Cucurbita maxima (Rimu)	carcmaB0614
Carg12328	Cucurbita maxima (Rimu)	carcmaB0615
Carg12328	Cucurbita maxima (Rimu)	carcmaB0616
Carg12328	Cucurbita moschata (Rifu)	carcmoB0594
Carg12328	Cucurbita moschata (Rifu)	carcmoB0597
Carg12328	Cucurbita moschata (Rifu)	carcmoB0598
Carg12328	Cucurbita moschata (Rifu)	carcmoB0599
Carg12328	Cucurbita pepo (Zucchini)	carcpeB0617
Carg12328	Cucurbita pepo (Zucchini)	carcpeB0618
Carg12328	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12328	Cucurbita pepo (Zucchini)	carcpeB0624
Carg12328	Cucurbita pepo (Zucchini)	carcpeB0625
Carg12328	Wild cucumber (PI 183967)	carcpiB0480
Carg12328	Bottle gourd (USVL1VR-Ls)	carlsiB400
Carg12328	Bottle gourd (USVL1VR-Ls)	carlsiB401
Carg12328	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12328	Melon (DHL92) v3.5.1	carmeB0447
Carg12328	Melon (DHL92) v3.5.1	carmeB0448
Carg12328	Melon (DHL92) v3.6.1	carmedB0450
Carg12328	Watermelon (Charleston Gray)	carwcgB0433
Carg12328	Watermelon (Charleston Gray)	carwcgB0435
Carg12328	Watermelon (97103) v1	carwmB0442
Carg12328	Watermelon (97103) v1	carwmB0444
Carg12328	Watermelon (97103) v2	carwmbB0464
Carg12328	Wax gourd	carwgoB0530
Carg12328	Wax gourd	carwgoB0533