Carg12328-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12328-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	yrdC domain-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_074 : 339265 .. 342297 (-)
Sequence length	1190

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGGTATGCATTCCTTTTAATGGGTTGTTTCTGTAATTTCCTTTTCTATTTTGTGAGTTTCTTTTCTTTTTGCCAACTATGAAGGAGTTTTATCAATTGTAATATAGATTTTTCTTAAGATGAAGTCTTCATGGTAGGTGTAGGTGGGAAAGAACCTCCGATTCTTCCAAAATTTCTTAAAAATAGAGGATGGTCTTTGTGATCTTGTTTAGTATAAAGGTTTTTGGTTAAAGATCTTGGTTGAGTCAGGAGTACTGGTCGTATGAGCGTGGGTGGCACATGGTTGTTTGACTCTCGCTAGTCGATGTTTGCCTTTCATTGAGATGAGACGCCTTATGAATTCTCCCTATTCAACGAAGAGACAATTGTTTGACCGCACACGATGTTTTTGGCTTAGCTTCACACGATGATTTTGCACCCCTGATTGTGGCGAGTGGGAATAGTTGATCGTTGCCCAAGCTCGTTTTAGCGTATGACGCATGAGTGTCTCTCATGGTTGCTAGGATCGAGAGACTTTTTCGAGTTGGCAGATAGTCTTCTGGGAGAAATGTGGTGGTAAGGGAGAGAACTAGGGGGAGGTCATCTTCTTTAGTACTGTTACTAGGTGGCAGTGGCGTGAAGGATCGCTTTGCTACAATTTAGTTTCATGCCAAGCAAGGGGCTCTTCTTCAGGAAAAGATGTCTTACAGAGGCTTCGGTACGGGTGTAGCTAGTTTTAAATACTAAGGGAAAATGTTGCAGAGTAGCTTGGGAGATTCTTCATGGGAAGGTCTTCGTTCTTTATTTCACAGGCACGGACGAAAACGAGTGGATAATTTTCAAGGAGAAACTAGGAGTACTTTTGTTGCGGAGTTTGAACTTTCCTCCACTCTTTTAATGTCCTTACCCTTCTCTCATCGCTTGGACATCTTTTTCTTTTGAGAAGATGGTTAAGGAATCTGTTGCTTTGCAAGTGGAAGTGTGAATGTTGAAGGAGGGTATGGTCGAGTTTATTTTTGATACTAGAAGAGTGGTTTTGGTGCTAAGTGAACTCTCTTCTAATTCTTGATCTTTGATTAATAATGGATTGTGAGAAGTCTGAATGTTTGGTAGAATAATTGCATTACTGATTAGATTCTGAGGAAAATACAACATAGTGATATGATGTTATAAGATTGAGGGATAATTATCAAATTCATCATTGTGTTAAAACATAATTGTTTCCACGCTCTTCAGGATCTAAAAATGGTTATCAATTATGCATCCTTTTAGAATAATTTTTCAATCTTTTAAAACGCTCTTCTTTCCTAGTTTGGAGGTGTTATCCTGTCTGTGAAATTATATGCACAAATTAACCATTTCTAAACTTAATAATGTTGCACTCTCCATTTATGTAACTGTGGTTTCTGTTGGGATTAATTTTGCAGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGTTTGTACTACAAATCTCTTTCTTTTGATAATGTAACCTTGACGAGCATTCTTTGATTGAAGAAAGTAGACGAGTAACTATTTTTTTGGGTAGCGTACTCGGCTTCTGTTGGGCGGGTTGAAACAATCTTTTGGATATTCTGTTCTTACGTTGATTAAACCGTTTTAATTTTTTTTAAATGCTAAAGAGTACTCTGGGAGGGGTCCTCTCCCTATGGAAACAAGATATTAATTTGACATATCCCTTATTAATGGATTGGACTGTCACACCTACATATCCAAGAATATGTTCATTTAGATTTTAGTCTCTAACCTTCCTGTAGTCTGAGTTTTTTACATTTAGATTTTTTGTAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGGTATGTTTGTTCTTGTGATTCTTCTATTTTCGTCGAATGACTCAAACAATGGTGTGTATCATAATAATGTTGATTCTACATTTGCAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATAT

mRNA sequence

TAGGTGCTCCGAGTTATGGATTTGTTTCGTTCTTGCATCACAATAGAGGATCGAGGTTGAATTTTCCTAAAACGGTATGGAGTTTGGAAAAATGTAGTATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGAGTATCAGAATCTTCTCCACTTCCCAAACCGTATCTGTTAGTCACTATAGATAGAGATTGCGATGAATTTTTTTAGGCCGAGTGAAAGTAGATCAATTATTATGGTTTAAACTGATATGAACCACGACCAAGGAATTTTCATATGTCAAGGTCCAATTACAAGGACGAGAATCAAAAAGCTACAACAAACTTTATATACTTATATTCAAGCTATGGTGAGCTCATCGTAAGAAATTCTAGAAGACGTTGTAGATCTCTCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCATTTTAAGTTGCATTTAATGAACATGAGCTCAGCTAAATTTATAGCATATTTTATTTATTGCACTTATAATTTGACTATTTGTTTGTCATATTTAAACTAGTTTTAAATAT

Coding sequence (CDS)

ATGCGCGTGGAGAACAGTTTGCAAGCTCTTCGCCCTGCCTCTGAAGCTTTTGCTCAAGAAGCTATTGAAGCTCTTAAGGCTGGGAAGGTTATTGCAGTCCCCACTGATACTCTTTACGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCAATAGAATTTACGAAATTAAAGGACGTAAACTTACGAGCCCTCTCGCCATTTGTGTTGGCGATGTCTCTGACATAACTCGTTTTGCTGTAGCAGACCATTTGCCTCATGGTTTGCTCGATTCTCTCCTTCCAGGACCGGTGACCGTTGTACTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTCTGAACCCTGGATTGGAGAGTATAGGAGTCCGAGTACCCGACGCTGACTTCATTAGGCTTATTTCCCGTAGATCAGGGACAGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTCATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTCTACGATGGTGGCATTCTTCCTGCTGGACGAGCAGGTTCTACGATTATCGACCTCACCAAGCGAGGGACGTTTAAGATAATCAGAGCTGGAAGTGCCAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTGTTAGAAGAAGCAGATAGTGCTGCTTGA

Protein sequence

MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA

Homology

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BLAST of Carg12328-RA vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 438.7 bits (1127), Expect = 1.2e-119
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 244 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

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BLAST of Carg12328-RA vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 2.4e-117
Identity = 219/224 (97.77%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRGTFKIIRAGSAKEQTVATL+RYSLLE+ADSAA
Sbjct: 244 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLKRYSLLEDADSAA 287

[Close]

BLAST of Carg12328-RA vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 429.9 bits (1104), Expect = 5.4e-117
Identity = 219/224 (97.77%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVENSLQALRPASEAFAQEA EALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR
Sbjct: 64  MRVENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 123

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES
Sbjct: 124 KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 183

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRSGTALALTSANLSG+PSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 184 IGVRVPDADFIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVLPAG 243

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEADSAA 225
           RAGSTIIDLTKRG FKIIRAGSAKEQTVATLERYSLLEEADSAA
Sbjct: 244 RAGSTIIDLTKRGMFKIIRAGSAKEQTVATLERYSLLEEADSAA 287

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BLAST of Carg12328-RA vs. NCBI nr
Match: XP_004148791.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN64719.1 hypothetical protein Csa_1G077210 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 7.1e-109
Identity = 202/220 (91.82%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 278

[Close]

BLAST of Carg12328-RA vs. NCBI nr
Match: XP_008465284.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 394.4 bits (1012), Expect = 2.5e-106
Identity = 196/220 (89.09%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           M VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MPVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 239 RAGSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

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BLAST of Carg12328-RA vs. TAIR10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-91
Identity = 164/207 (79.23%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 10  LRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAIC 69
           + PA+EA+AQEAIEA+K+ KVIAVPTDTLYG ACDACS EAV+RIYEIKGRKLTSPLAIC
Sbjct: 68  VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAIC 127

Query: 70  VGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDAD 129
           VGDV DI R A   HLPHGLLDSLLPGPVT+VL+RGESSILEKSLNPG+ +IGVRVPD +
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCE 187

Query: 130 FIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDL 189
           FIR +SR SG+ LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRAGSTI+DL
Sbjct: 188 FIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTIVDL 247

Query: 190 TKRGTFKIIRAGSAKEQTVATLERYSL 217
           TK G +KIIR GSAK+ TVA LE+Y L
Sbjct: 248 TKVGKYKIIRPGSAKQATVAILEKYLL 274

[Close]

BLAST of Carg12328-RA vs. TAIR10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-11
Identity = 61/207 (29.47%), Postives = 93/207 (44.93%), Query Frame = 0


Query: 19  QEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITR 78
           Q  I+ LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 79  FAVADHLPHG----------LLDSLLPGPVTVVLKRGESSILEKSLNPGLES-------- 138
           F +    P G           +   LPGP T +L      + ++ +  G  S        
Sbjct: 144 FTMG--FPRGDGHGHANVFRAVKQCLPGPYTFIL-TASKELPKQCVGYGTTSVKYASRKN 203

Query: 139 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLW-----QHCAYVYDGG 198
           +GVR+ D    + I ++    L  TS  + G   +  + D   +      +   +V DGG
Sbjct: 204 VGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 263

Query: 199 ILPAGRAGSTIIDLTKRGTF-KIIRAG 202
           I  A    STI+D+T  G + K+IR G
Sbjct: 264 IRVA--EPSTIVDMT--GPYPKVIREG 281

[Close]

BLAST of Carg12328-RA vs. Swiss-Prot
Match: sp|Q0VC80|YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.2e-48
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A  SEA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  G 
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 201 KIIRAGSAKEQTVATLERYSLL 218
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of Carg12328-RA vs. Swiss-Prot
Match: sp|Q3U5F4|YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.4e-45
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A SS A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAKEQTVATL-ERYSLLEEADSAA 225
            IIR G A E T + L ++Y LL    S +
Sbjct: 254 GIIRPGCALENTTSILQQKYGLLPSQGSCS 280

[Close]

BLAST of Carg12328-RA vs. Swiss-Prot
Match: sp|Q499R4|YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0


Query: 21  AIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFA 80
           A+  L+AG V+AVPTDTLYGLAC A  S A++ +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 81  VADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGT 140
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++  G 
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 141 ALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL-----PAGRAGSTIIDLTKRGTF 200
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 201 KIIRAGSAKEQTVATLE-RYSLLEEADSAA 225
            IIR+G A E T A L+ +Y LL    S +
Sbjct: 254 GIIRSGCALENTTAILQGKYGLLPSQGSCS 280

[Close]

BLAST of Carg12328-RA vs. Swiss-Prot
Match: sp|Q86U90|YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 100/221 (45.25%), Postives = 138/221 (62.44%), Query Frame = 0


Query: 6   SLQALRPASEAFAQ---EAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 65
           ++QA  P    + +    A+  L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR  
Sbjct: 55  AVQAASPERAGWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSE 114

Query: 66  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 125
             PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G
Sbjct: 115 AKPLAVCLGRVADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVG 174

Query: 126 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGIL----- 185
           +R+PD  F++ +++     LALTSANLS Q SS+ V +F++LW   + V DGG +     
Sbjct: 175 IRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQS 234

Query: 186 PAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVATL-ERYSLL 218
           P  R GST++DL+  G F IIR G A E T A L ++Y LL
Sbjct: 235 PECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKYGLL 272

[Close]

BLAST of Carg12328-RA vs. Swiss-Prot
Match: sp|Q60369|TSAC_METJA (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-21
Identity = 62/182 (34.07%), Postives = 103/182 (56.59%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKA----GKVIAVPTDTLYGLACDACSSEAVNRIYE 60
           M ++N +  +   +E   ++ +E LK     GK++   TDTLYG++ +A + +AV ++Y 
Sbjct: 1   MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYN 60

Query: 61  IKGRKLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKR--GESSILEKSL 120
           IK R+   PL+ICV D ++I ++A  + L   ++D  LPGP+T++LK+  G   I+ K  
Sbjct: 61  IKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAK-- 120

Query: 121 NPGLESIGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFE-NLWQHCAYVYD 176
               + IG+R+PD   IR +S      L  TSAN+SG+ S   V + +  + +   YV D
Sbjct: 121 ----DYIGIRIPDEPIIRELSI---VPLTTTSANISGKESPTTVDEIDKEVLKKVDYVID 173

[Close]

BLAST of Carg12328-RA vs. TrEMBL
Match: tr|A0A0A0LUP4|A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 4.7e-109
Identity = 202/220 (91.82%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           MRVEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTIIDLT++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 239 RAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAA 278

[Close]

BLAST of Carg12328-RA vs. TrEMBL
Match: tr|A0A1S3CNI2|A0A1S3CNI2_CUCME (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.7e-106
Identity = 196/220 (89.09%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MRVENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGR 60
           M VEN LQALRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGR
Sbjct: 59  MPVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGR 118

Query: 61  KLTSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLES 120
           KLTSPLAICVG VSDITR+A+ DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+S
Sbjct: 119 KLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDS 178

Query: 121 IGVRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAG 180
           IGVRVPDADFIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAG
Sbjct: 179 IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAG 238

Query: 181 RAGSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEEA 221
           RAGSTI+DLT+RGTFKIIRAGSA++QT+ATL+RYSLLE A
Sbjct: 239 RAGSTIVDLTERGTFKIIRAGSAEKQTIATLQRYSLLEAA 278

[Close]

BLAST of Carg12328-RA vs. TrEMBL
Match: tr|A0A0D2VKK6|A0A0D2VKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G266600 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.6e-96
Identity = 177/217 (81.57%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAGKVIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 12  VENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 71

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSILEKSLNPGL+SIG
Sbjct: 72  TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSLNPGLDSIG 131

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 132 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 191

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 192 GSTVVDLTKPGKYRILRPGSAKEETVAILENYSLLEE 228

[Close]

BLAST of Carg12328-RA vs. TrEMBL
Match: tr|A0A2P5S6M2|A0A2P5S6M2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08234 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 4.6e-96
Identity = 176/217 (81.11%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAGKVIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 12  VENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 71

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSIL+KSLNPGL+SIG
Sbjct: 72  TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILDKSLNPGLDSIG 131

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 132 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 191

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 192 GSTVVDLTKPGKYQILRPGSAKEETVAILENYSLLEE 228

[Close]

BLAST of Carg12328-RA vs. TrEMBL
Match: tr|A0A1U8MBI5|A0A1U8MBI5_GOSHI (yrdC domain-containing protein, mitochondrial-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107936069 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.9e-96
Identity = 176/217 (81.11%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 3   VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKL 62
           VEN L+ +R A+E+ A EAIEALKAG+VIAVPTDTLYG ACDACSSEAVNRIY+IKGRK 
Sbjct: 57  VENKLELIRSATESNADEAIEALKAGEVIAVPTDTLYGFACDACSSEAVNRIYDIKGRKH 116

Query: 63  TSPLAICVGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIG 122
           TSPLAICVGDVSDI  FAV DHLPHGLLDSLLPGPVT+VL RGESSILEKSLNPGL+SIG
Sbjct: 117 TSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSLNPGLDSIG 176

Query: 123 VRVPDADFIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRA 182
           VRVPD+DFIR+I+R SG+ALALTSANLSGQPSSV + DFENLW+HCAYVY+GG+LPAGRA
Sbjct: 177 VRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEGGVLPAGRA 236

Query: 183 GSTIIDLTKRGTFKIIRAGSAKEQTVATLERYSLLEE 220
           GST++DLTK G ++I+R GSAKE+TVA LE YSLLEE
Sbjct: 237 GSTVVDLTKPGKYQILRPGSAKEETVAILENYSLLEE 273

The following BLAST results are available for this feature:

BLAST of Carg12328-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948702.1	1.2e-119	100.00	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]
XP_023521571.1	2.4e-117	97.77	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	5.4e-117	97.77	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_004148791.1	7.1e-109	91.82	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN6...	[more]
XP_008465284.1	2.5e-106	89.09	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]

BLAST of Carg12328-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60590.2	1.3e-91	79.23	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	3.7e-11	29.47	DHBP synthase RibB-like alpha/beta domain	[more]

BLAST of Carg12328-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0VC80\|YRDC_BOVIN	6.2e-48	49.50	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
sp\|Q3U5F4\|YRDC_MOUSE	8.4e-45	46.67	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
sp\|Q499R4\|YRDC_RAT	1.1e-44	46.67	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
sp\|Q86U90\|YRDC_HUMAN	1.6e-43	45.25	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
sp\|Q60369\|TSAC_METJA	3.8e-21	34.07	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of Carg12328-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP4\|A0A0A0LUP4_CUCSA	4.7e-109	91.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1	[more]
tr\|A0A1S3CNI2\|A0A1S3CNI2_CUCME	1.7e-106	89.09	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A0D2VKK6\|A0A0D2VKK6_GOSRA	1.6e-96	81.57	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G266600 PE=4 ...	[more]
tr\|A0A2P5S6M2\|A0A2P5S6M2_GOSBA	4.6e-96	81.11	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD08234 PE=4 SV...	[more]
tr\|A0A1U8MBI5\|A0A1U8MBI5_GOSHI	5.9e-96	81.11	yrdC domain-containing protein, mitochondrial-like isoform X1 OS=Gossypium hirsu...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017945	DHBP_synth_RibB-like_a/b_dom
IPR006070	YrdC-like_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12328	Carg12328	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12328-RA	Carg12328-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12328-RA.three_prime_UTR.1	Carg12328-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12328-RA.CDS.4	Carg12328-RA.CDS.4	CDS
Carg12328-RA.CDS.3	Carg12328-RA.CDS.3	CDS
Carg12328-RA.CDS.2	Carg12328-RA.CDS.2	CDS
Carg12328-RA.CDS.1	Carg12328-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12328-RA.five_prime_UTR.1	Carg12328-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12328-RA.exon.4	Carg12328-RA.exon.4	exon
Carg12328-RA.exon.3	Carg12328-RA.exon.3	exon
Carg12328-RA.exon.2	Carg12328-RA.exon.2	exon
Carg12328-RA.exon.1	Carg12328-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.870.10		coord: 7..212 e-value: 9.7E-56 score: 190.0
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 3..216
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 3..216
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 23..201 e-value: 4.7E-47 score: 159.7
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 17..207 e-value: 6.5E-44 score: 147.5
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 15..203 score: 26.345
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	SSF55821	YrdC/RibB	coord: 17..203