Cla008297 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008297
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Sua5/YciO/YrdC/YwlC family protein (AHRD V1 **-- B1L6Z2_KORCO); contains Interpro domain(s) IPR004388 Sua5/YciO/YrdC/YwlC
Location	Chr3 : 2150679 .. 2155829 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGCTCTAACTGGTTATTGTAGGATTGAAACATTAATTAACACAGATTTTTACGTTTTAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGGTATGCCATTCCTATTATGGTTTTTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTAATTGTCTTATTTTGTGAGTTCTTATTCTTTTTGTCGGGAGGTGACAACACCTTCTGTTTATTCTTTTGTCAATGAGGAATGCCCTTATCAATAGTAATATAAATCTTTCATAAGAGGGGAGATTGATTCTTGCGATCTTGTTCAGTACAAAGTTTTTGGTGAGAGGTCTTGACCAGGAGTGCGTGTCTCACACTCACTCCCTTGGTTATGATATGGGTGATGATGGTAGGTGCGCGGGTGGTAGTTCTGTTACTAGGCGATGTGGGTGAAGGATAGCTTGGCCAGAATTCAGTCTAGTGCAAAGCAAGGGACTCTTCTTCAGGAAAAGATGTCTTTCAGAGGCTTTGGTATGGGTGTAGCTAATTTCAAATAGTAGAGGAAAATGTTGCACGGTAGCATAAGAGAATCCTCACGGGAAGATCCTTTCCCTGAGTTGCAACTGTCACGGAGGAAAATTGATGTAGGGATCATTTAGTTATTTTTATACTGTGTTGTTACCGTTTTCAGTTTTTGTGTTGTAAGGCTTTAGTGGGCTGGCTGATCTTTAAGTTAGTTTTGTATTTGCCTATAAATAGGCTTGTTATCCTCCCGGTTATAACATAATTAATAATACTCCAAGTTTGAAACTTTTTTCCAAGAGGTTTTCTTACATTAAAAACGAGTGGAGAATCTTCAAGAAGAAACTGGGAGTACCTTTCTTGTAGAGGTTAAACCTTCCAACACCCTTTCGATGTCCTTCTCATTCTCTCATCACATGAACATCTTTTTGTTTGAGAAGATGGTTAAGGAATCTGTTGCTTTGCTAAGGGTGTTTTGAAGGAAGGTGTGGTCGAAAGAGTGAGTTTGGTGTGAGAGGAGTCCTCTTGTAATTCTTGGTCTTTGATTAACAATGGACTTTGAGAAGTTTGTATACCGGTAGAAAGTTCATTCTATGATAACGCAACACTCATTTCGGTTGTGCAATTGGTTTAGTCCCATGAAATGCAAGTTGGATTACAGTTGGTAGATCAACAATGTTCTTGGGTGGATGGGTGAAAGTGAATGATGAGATGGCCCCTCATATTCATTTGTTAGAATTGTTTTGTAAAGGTAGTTCTTTATTGCGGGTGGGACGATATAGATGATGTTCTGGTTTAGGGGAGACTTTTTTTGAGGATGTCTCTTTATGAGCTTGTGTGTGGAGGAGATGGGCTCATTTTGTTTGGGTTTTCCGTAAATTGTGAAGGATAGTACTATTTTTGCATTTCTTTCTTGGTGATGGTCCAGTGGTTAGTTTTTGGATGGGGGCTACTGGAAGAGATCCTTTGGTTTGTACCCTCGTTTTACAAGTTTGTGGAGTATCTTCCCTGTAAGAAATTGAAGATTTTTAAGAGAGCTTGAGAGCCAACGGGAGAGCCAAAGAGGTTGTAACATCTGAGCTTAGGAGGGTTATATAAATGAACCGAGACTACATTTGAATGAGAAAGATCCTGAGGATATGAAAGCATGGTTAAGATAGGCTTAAAATAATTGATAGCTACTACCAATACCAACAAGGTGCACCTTCTTTTTCTGTGGCTCAATCATACGAACTTCAAAGTTAAGCATGCTTAGCTTTGAGCAATTTTGAGTTGGGTGACCTCCTGGGAAATTTTTGAGTAAGCATGTGAGTGGGGACTGAAAGGATCCTTGTTGGTTTGTGGTGGACATTCTTTACTCTTGGAAGTAGTTTAAGACGAGTAGATAATGTGGCTCGGTCACAGGAGATGCAAGGGAATGCCAGGGCCATCAATTCCCAAATTTGGATTCCGAATCTAAGACTGAATCCTGAGCTTGGGGTGTTACAGAAGTCTCGTGAAAAAGAGCCCTCGGAGAGATGTGGTTTGGGTTCCTTGTTTGGGCCTAAATGTCCAAAGATTTATGTATTTATCCCTCTTATGCATAACAACTAGAGCTTTTTTTTTCTTTCTTTTTTTTTTTCTCTCTCTCTCTCTCTCTTTTTTTCTTTTTTTAAAAAAATCTTTTTGTTAGGCTAGTATTGTGGTAGGCTCTTTTTCCCTTTTCCTTTTTTATTTTTTGTATAGAGTATGTATTCTTTCACTTGTATTAACGAAGCTTATGCTTAGTTTTCATGCAGAATAATAACAGAAAATAGCCTTATGTAAAATTTTATTCTTCAACTCCAATGTCAATATTTATTGCCCTGACTTGTGCATAAGACAGTTGACTGTTTAAAAGAAGATAAAATGATCTTTTTGTTAAATCTTGAATATCATTGTGGACAGTCGTCTAAAAGACATACTTTTATTTGGTTGCCTTTATCTCGCCCATTCCTGTTCTGAAATCCACCATTTTTCCTGTTTGATAGAACAATTGTTTTACTGCATGAATTCTTTGGGAAGTACTGTATGGTGATACAATGTTATAAGATTGAGATATACTTATGAAATGCATCATTGTGTTTGAACTTAATCGTTACCACACTCTTCAGGATCTAAAAATGGTTTATCAATTAAGTATAATTTTTTAGATAGAACTTTCAAGTTTTCAAAAACACTCTTCTTTCATGAAAATATAGGAAGTATACTCTATAATTTTGTTAAATCATGAGATGTGTTTTTGGAAAGAGGGTAACACAATATTCATTTTCGAAGTGCAAAGTTGATGAACAAAATTGAAGAGAGGTGTTTTCGTGTTTGTGAAACTATATGCACAAAGTAGCTATTTCTAAACTTATAGCGTTGCAGTTTGCATTTTTTTAACTGTGGTTTTCTGTGGGGATTAATTTTGCAGTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGACGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTTTGTATTAGAAATCTGCTTGTTTATGCTGAGATAATAAATAACGCACTAAAGGTTGACAGTATTTTCGAACAATTAACCTTGAGGAGCATTATTTGATTGAAATAAAGTAAATAGGTTAATAAACACTACTAATCCTTAAAATGAAGTAGCAATTTAATCAATAAACAGTATATAAGAATAACAATTTAGTTCATGTACTTATTTTTAACAATCTAATCTCTACTTTGAAAAATTTTGTCAAAATAAAGTGTGAATTTTTACAATGCAATGACATCTTTGTTTTTTTATAGACACATCCGGTATCTAATCCGTTTATTGATCTACATTTGGAAGAAATCTCATTCAATCTTTAACAATATTCTTCAAAAGGCAATTTCAAATGCCCTTTCTGAAAGTTAGTATTTGTCGCATCGCCTATAAAAATAAGATATTAATTTTTTACATCCCATGTTAATGGATTGTACTGTAGATATTTAAATAGTTGCCCCCATGTCACACCTGCGTATCTGAGATTATGTTCATACATTTTAGTCTCCAACCTTCTTGTAGTCTGAGTATTTTACATTTAGGTATTTTGCAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGGTACATTTCTTCTTGTGATTCTTCTATTTACCTTAATAAGTGAAAGTAGTCTCCTCCTGTAATGACTTTGCCACTGTAATACTGAAATTTTGAGGGAAAATATTAGGCGCGGATGGAAAACCACATAGTTTTTGTTTTTTAGTTTTTGAAAATTAAGTCTCTAAACATCCCGTTCACCTTTAAATTTCTTACTTTATTATCTACTTTCTACCAATGTTTTAAAAAACCAAACCAAGTTTTGAAAATTAAAAAAATAGTTTTAAAAAACTCGTTTATGGAATTTGACGAAGAATTCAACTCTCTTACTTATGAAAAATAAAAACAATGGTAAGAAATTGAGAGAAATTAGGCTTAATTTTTCAAAACAAAAAACCATAAGTTTACCAAATGGGGCCTTAAAATTTTAGTTTGTCATTTTCTTGCCTAGTTCTGTTAGGGTAAAGCTTTGTCAAACTCCGAGAGCTAACAATACTATTTCTAGTCTTTTAACTCCACTCTAGGGCGATACTGTTACATAAATGATGGTTGATTTAACACGATGTGATAAATAATAGACAGAAAAACATAGATAGTTCGACAAGTTTAAATAATTTAAGATTACATTAAATCACAGCTCAGGCTTCAGCTGCTGAAACTGTTTTGAAGTTTTTAGGTAAATTGACCAATCGTCATCATCATCAAAATTTTGGAAACAAAAGCATGAAGCAAATTAGAAGTGATTATATTTCATTGTGATAGTTCTCATGATATTGATTGTGCATTTGCAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCCCTATTAGAAGAAGCAGCTAGCATTTGA

mRNA sequence

ATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGACGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCCCTATTAGAAGAAGCAGCTAGCATTTGA

Coding sequence (CDS)

ATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGACGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCCCTATTAGAAGAAGCAGCTAGCATTTGA

Protein sequence

MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

Homology

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BLAST of Cla008297 vs. Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-44
Identity = 98/207 (47.34%), Postives = 131/207 (63.29%), Query Frame = 1


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A  SEA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTY 251
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G +
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 252 KILRAGSAKEQTVATLERYSLLEEAAS 274
            I+R G A E T A L+ Y LL    S
Sbjct: 251 GIIRPGCALESTSAILQEYGLLPSHGS 274

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BLAST of Cla008297 vs. Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.5e-43
Identity = 98/208 (47.12%), Postives = 131/208 (62.98%), Query Frame = 1


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTY 251
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G +
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 252 KILRAGSAKEQTVATL-ERYSLLEEAAS 274
            I+R G A E T A L ++Y LL   AS
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

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BLAST of Cla008297 vs. Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 103/245 (42.04%), Postives = 142/245 (57.96%), Query Frame = 1


Query: 35  GSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLAC 94
           G+RL     + ++E  S       +ALR A           L+AG V+AVPTDTLYGLAC
Sbjct: 45  GARLLRLPESEAVEAASPERSGWTEALRAA--------VAELRAGAVVAVPTDTLYGLAC 104

Query: 95  DACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLK 154
            A  S A+  +Y +KGR    PLA+C+G V+D+ R+     +P  LL+ L PGPVT+V++
Sbjct: 105 SASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQV-RVPRELLEDLFPGPVTLVME 164

Query: 155 RGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFEN 214
           R E   L K LNP    +G+R+PD  F+  +++     LALTSANLS Q SS+ V +F++
Sbjct: 165 RSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEFQD 224

Query: 215 LWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLE-RYSLL 274
           LW H + V DGG +     P  R GST++DL+  G + I+R+G A E T A L+ +Y LL
Sbjct: 225 LWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSGCALENTTAILQGKYGLL 278

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BLAST of Cla008297 vs. Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.3e-41
Identity = 95/208 (45.67%), Postives = 129/208 (62.02%), Query Frame = 1


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A SS A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTY 251
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G +
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 252 KILRAGSAKEQTVATL-ERYSLLEEAAS 274
            I+R G A E T + L ++Y LL    S
Sbjct: 254 GIIRPGCALENTTSILQQKYGLLPSQGS 278

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BLAST of Cla008297 vs. Swiss-Prot
Match: SUA5_PYRAB (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-17
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 1


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   ++ GK++A PT+T+YGL  +A    AV RI+E KGR   +PL I +     +    
Sbjct: 19  AAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE--V 78

Query: 132 VTDHLPSG---LLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR 191
           +   +P     L     PGP+T+VL + E  ++ + +  GLD++ VR+P  +    +   
Sbjct: 79  LAKEIPEEAEMLAKRFWPGPLTLVLPKSE--VVPRVITGGLDTVAVRMPAHEIALKLIEL 138

Query: 192 SETALALTSANLSGQPSSVCVNDF-ENLWQHCAYVYDGGVLPAGRAGSTIIDLTK 243
           SE  +A  SAN+SG+PS    +   E+ +     + DGG    G   ST+IDLT+
Sbjct: 139 SERPIAAPSANISGKPSPTSAHHVAEDFYGKIECIIDGGETRIG-VESTVIDLTE 188

[Close]

BLAST of Cla008297 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 7.1e-138
Identity = 249/274 (90.88%), Postives = 264/274 (96.35%), Query Frame = 1


Query: 1   MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQA 60
           M +SLSLIRTF TFPSS  GS NYG+VSF Q+NRGSR+SF KT WSLEKC MRVENCLQA
Sbjct: 8   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDAD
Sbjct: 128 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 247

Query: 241 TKRGTYKILRAGSAKEQTVATLERYSLLEEAASI 275
           T++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Sbjct: 248 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of Cla008297 vs. TrEMBL
Match: A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.7e-102
Identity = 195/256 (76.17%), Postives = 218/256 (85.16%), Query Frame = 1


Query: 19  RGSPNYGLVSFFQQNRGSRLSFPKTTWS-LEKCSMRVENCLQALRPASEAFAQEATDALK 78
           RG P  G V F QQ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALK
Sbjct: 71  RGVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALK 130

Query: 79  AGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLP 138
           AGKVIAVPTDTLYG ACDACSSEAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP
Sbjct: 131 AGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLP 190

Query: 139 SGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTS 198
            GLLDSLLPGPVTVVL RGE+S+LEKSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTS
Sbjct: 191 YGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTS 250

Query: 199 ANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQ 258
           ANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLTK G YKILR GSAKE+
Sbjct: 251 ANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEE 310

Query: 259 TVATLERYSLLEEAAS 274
           TVA LE+YSLLEEAAS
Sbjct: 311 TVAILEKYSLLEEAAS 326

[Close]

BLAST of Cla008297 vs. TrEMBL
Match: A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 4.1e-101
Identity = 193/253 (76.28%), Postives = 216/253 (85.38%), Query Frame = 1


Query: 22  PNYGLVSFFQQNRGSRLSFPKTTWS-LEKCSMRVENCLQALRPASEAFAQEATDALKAGK 81
           P  G V F QQ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGK
Sbjct: 24  PKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGK 83

Query: 82  VIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGL 141
           VIAVPTDTLYG ACDACSSEAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GL
Sbjct: 84  VIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGL 143

Query: 142 LDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANL 201
           LDSLLPGPVTVVL RGE+S+LEKSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANL
Sbjct: 144 LDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANL 203

Query: 202 SGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVA 261
           SGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLTK G YKILR GSAKE+TVA
Sbjct: 204 SGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVA 263

Query: 262 TLERYSLLEEAAS 274
            LE+YSLLEEAAS
Sbjct: 264 ILEKYSLLEEAAS 276

[Close]

BLAST of Cla008297 vs. TrEMBL
Match: D7SKX9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02920 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.5e-98
Identity = 190/268 (70.90%), Postives = 219/268 (81.72%), Query Frame = 1


Query: 6   SLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPAS 65
           SL+ TF + P    G   +G V   +QNR  R+SFPK      K    + + L  +RPA+
Sbjct: 11  SLLLTFRS-PLRALGVAKFGFVQILKQNRRFRVSFPK------KMEAVMGSELGVVRPAT 70

Query: 66  EAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVS 125
           +A A+EA +A+KAGKVIAVPTDTLYG ACDACSSEAV+RIYEIKGRK TSPLAICVGDV 
Sbjct: 71  DAHAEEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVL 130

Query: 126 DITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLI 185
           DI RFAVTDHLP GLL SLLPGPVTVVL+RGE SI+EKSLNPGLDSIGVRVPD DFIR+I
Sbjct: 131 DIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDCDFIRVI 190

Query: 186 SRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGT 245
           +  SETALALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST++DL++ G 
Sbjct: 191 AHGSETALALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGSTVVDLSRLGK 250

Query: 246 YKILRAGSAKEQTVATLERYSLLEEAAS 274
           YKILR GSA E+TVA LER+SL+ EAA+
Sbjct: 251 YKILRPGSAMEETVAILERHSLMPEAAA 271

[Close]

BLAST of Cla008297 vs. TrEMBL
Match: A0A0D2VKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G266600 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.4e-95
Identity = 179/228 (78.51%), Postives = 202/228 (88.60%), Query Frame = 1


Query: 46  SLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRI 105
           ++EK  + VEN L+ +R A+E+ A EA +ALKAGKVIAVPTDTLYG ACDACSSEAV+RI
Sbjct: 4   NVEKYDVGVENKLELIRSATESNADEAIEALKAGKVIAVPTDTLYGFACDACSSEAVNRI 63

Query: 106 YEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSL 165
           Y+IKGRK TSPLAICVGDVSDI  FAVTDHLP GLLDSLLPGPVT+VL RGE+SILEKSL
Sbjct: 64  YDIKGRKHTSPLAICVGDVSDIEHFAVTDHLPHGLLDSLLPGPVTIVLGRGESSILEKSL 123

Query: 166 NPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDG 225
           NPGLDSIGVRVPD+DFIR+I+R S +ALALTSANLSGQPSSV + DFENLW+HCAYVY+G
Sbjct: 124 NPGLDSIGVRVPDSDFIRIIARGSGSALALTSANLSGQPSSVSIKDFENLWEHCAYVYEG 183

Query: 226 GVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS 274
           GVLPAGRAGST++DLTK G Y+ILR GSAKE+TVA LE YSLLEE  S
Sbjct: 184 GVLPAGRAGSTVVDLTKPGKYRILRPGSAKEETVAILENYSLLEEVLS 231

[Close]

BLAST of Cla008297 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 498.0 bits (1281), Expect = 1.0e-137
Identity = 249/274 (90.88%), Postives = 264/274 (96.35%), Query Frame = 1


Query: 1   MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQA 60
           M +SLSLIRTF TFPSS  GS NYG+VSF Q+NRGSR+SF KT WSLEKC MRVENCLQA
Sbjct: 8   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDAD
Sbjct: 128 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 247

Query: 241 TKRGTYKILRAGSAKEQTVATLERYSLLEEAASI 275
           T++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Sbjct: 248 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of Cla008297 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 1.9e-136
Identity = 245/274 (89.42%), Postives = 264/274 (96.35%), Query Frame = 1


Query: 1   MVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQA 60
           M +SLSLIRTFATFPSSH GS NYG+VSF Q+NRGSR+SF KT WSLEKC M VENCLQA
Sbjct: 8   MADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS+EAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDAD 180
           VG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDAD
Sbjct: 128 VGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDL 247

Query: 241 TKRGTYKILRAGSAKEQTVATLERYSLLEEAASI 275
           T+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Sbjct: 248 TERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of Cla008297 vs. NCBI nr
Match: gi|590590392|ref|XP_007016721.1| (DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao])

HSP 1 Score: 379.4 bits (973), Expect = 5.3e-102
Identity = 195/256 (76.17%), Postives = 218/256 (85.16%), Query Frame = 1


Query: 19  RGSPNYGLVSFFQQNRGSRLSFPKTTWS-LEKCSMRVENCLQALRPASEAFAQEATDALK 78
           RG P  G V F QQ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALK
Sbjct: 71  RGVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALK 130

Query: 79  AGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLP 138
           AGKVIAVPTDTLYG ACDACSSEAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP
Sbjct: 131 AGKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLP 190

Query: 139 SGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTS 198
            GLLDSLLPGPVTVVL RGE+S+LEKSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTS
Sbjct: 191 YGLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTS 250

Query: 199 ANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQ 258
           ANLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLTK G YKILR GSAKE+
Sbjct: 251 ANLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEE 310

Query: 259 TVATLERYSLLEEAAS 274
           TVA LE+YSLLEEAAS
Sbjct: 311 TVAILEKYSLLEEAAS 326

[Close]

BLAST of Cla008297 vs. NCBI nr
Match: gi|590590395|ref|XP_007016722.1| (DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao])

HSP 1 Score: 375.9 bits (964), Expect = 5.8e-101
Identity = 193/253 (76.28%), Postives = 216/253 (85.38%), Query Frame = 1


Query: 22  PNYGLVSFFQQNRGSRLSFPKTTWS-LEKCSMRVENCLQALRPASEAFAQEATDALKAGK 81
           P  G V F QQ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGK
Sbjct: 24  PKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGK 83

Query: 82  VIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGL 141
           VIAVPTDTLYG ACDACSSEAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GL
Sbjct: 84  VIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGL 143

Query: 142 LDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANL 201
           LDSLLPGPVTVVL RGE+S+LEKSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANL
Sbjct: 144 LDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANL 203

Query: 202 SGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVA 261
           SGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLTK G YKILR GSAKE+TVA
Sbjct: 204 SGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVA 263

Query: 262 TLERYSLLEEAAS 274
            LE+YSLLEEAAS
Sbjct: 264 ILEKYSLLEEAAS 276

[Close]

BLAST of Cla008297 vs. NCBI nr
Match: gi|731392615|ref|XP_010651157.1| (PREDICTED: yrdC domain-containing protein, mitochondrial isoform X2 [Vitis vinifera])

HSP 1 Score: 369.4 bits (947), Expect = 5.5e-99
Identity = 189/261 (72.41%), Postives = 216/261 (82.76%), Query Frame = 1


Query: 13  TFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEA 72
           TF S  RG   +G V   +QNR  R+SFPK      K    + + L  +RPA++A A+EA
Sbjct: 15  TFRSPLRGVAKFGFVQILKQNRRFRVSFPK------KMEAVMGSELGVVRPATDAHAEEA 74

Query: 73  TDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAV 132
            +A+KAGKVIAVPTDTLYG ACDACSSEAV+RIYEIKGRK TSPLAICVGDV DI RFAV
Sbjct: 75  IEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVLDIQRFAV 134

Query: 133 TDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETA 192
           TDHLP GLL SLLPGPVTVVL+RGE SI+EKSLNPGLDSIGVRVPD DFIR+I+  SETA
Sbjct: 135 TDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDCDFIRVIAHGSETA 194

Query: 193 LALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAG 252
           LALTSANLSGQPSSVC+ DFENLW+HCAYVYDGGVLP+GRAGST++DL++ G YKILR G
Sbjct: 195 LALTSANLSGQPSSVCIKDFENLWEHCAYVYDGGVLPSGRAGSTVVDLSRLGKYKILRPG 254

Query: 253 SAKEQTVATLERYSLLEEAAS 274
           SA E+TVA LER+SL+ EAA+
Sbjct: 255 SAMEETVAILERHSLMPEAAA 269

The following BLAST results are available for this feature:

BLAST of Cla008297 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YRDC_BOVIN	1.3e-44	47.34	YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1	[more]
YRDC_HUMAN	9.5e-43	47.12	YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1	[more]
YRDC_RAT	1.4e-41	42.04	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 ...	[more]
YRDC_MOUSE	2.3e-41	45.67	YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1	[more]
SUA5_PYRAB	1.8e-17	33.14	Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5...	[more]

BLAST of Cla008297 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUP4_CUCSA	7.1e-138	90.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1	[more]
A0A061GWW4_THECC	3.7e-102	76.17	DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_04...	[more]
A0A061GXZ3_THECC	4.1e-101	76.28	DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma caca...	[more]
D7SKX9_VITVI	2.5e-98	70.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02920 PE=4 SV=...	[more]
A0A0D2VKK6_GOSRA	4.4e-95	78.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G266600 PE=4 SV=1	[more]

BLAST of Cla008297 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462123\|ref\|XP_004148791.1\|	1.0e-137	90.88	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus]	[more]
gi\|659130663\|ref\|XP_008465284.1\|	1.9e-136	89.42	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]
gi\|590590392\|ref\|XP_007016721.1\|	5.3e-102	76.17	DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao]	[more]
gi\|590590395\|ref\|XP_007016722.1\|	5.8e-101	76.28	DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao]	[more]
gi\|731392615\|ref\|XP_010651157.1\|	5.5e-99	72.41	PREDICTED: yrdC domain-containing protein, mitochondrial isoform X2 [Vitis vinif...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006070	YrdC-like_dom
IPR017945	DHBP_synth_RibB-like_a/b_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010311	lateral root formation
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0002949	tRNA threonylcarbamoyladenosine modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004707	MAP kinase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU58241	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008297	Cla008297.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU58241	WMU58241	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 75..252 score: 2.6
IPR006070	YrdC-like domain	TIGRFAMs	TIGR00057	TIGR00057	coord: 68..258 score: 6.9
IPR006070	YrdC-like domain	PROFILE	PS51163	YRDC	coord: 66..254 score: 25
IPR017945	DHBP synthase RibB-like alpha/beta domain	GENE3D	G3DSA:3.90.870.10		coord: 69..260 score: 1.7
IPR017945	DHBP synthase RibB-like alpha/beta domain	unknown	SSF55821	YrdC/RibB	coord: 67..257 score: 3.36
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 62..274 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008297	Cla97C03G053070	Watermelon (97103) v2	wmwmbB124
Cla008297	Csa1G077210	Cucumber (Chinese Long) v2	cuwmB010
Cla008297	MELO3C026847	Melon (DHL92) v3.5.1	mewmB146
Cla008297	ClCG03G002070	Watermelon (Charleston Gray)	wcgwmB223
Cla008297	CSPI01G12530	Wild cucumber (PI 183967)	cpiwmB012
Cla008297	Cucsa.127080	Cucumber (Gy14) v1	cgywmB206
Cla008297	CmaCh01G005550	Cucurbita maxima (Rimu)	cmawmB429
Cla008297	CmoCh01G005820	Cucurbita moschata (Rifu)	cmowmB422
Cla008297	Lsi02G014090	Bottle gourd (USVL1VR-Ls)	lsiwmB185
Cla008297	Cp4.1LG02g13010	Cucurbita pepo (Zucchini)	cpewmB548
Cla008297	CsGy1G012560	Cucumber (Gy14) v2	cgybwmB012
Cla008297	MELO3C026847.2	Melon (DHL92) v3.6.1	medwmB143
Cla008297	Carg12328	Silver-seed gourd	carwmB0440
Cla008297	CsaV3_1G012730	Cucumber (Chinese Long) v3	cucwmB015
Cla008297	Bhi08G000299	Wax gourd	wgowmB479

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008297	Bottle gourd (USVL1VR-Ls)	lsiwmB051
Cla008297	Melon (DHL92) v3.6.1	medwmB090
Cla008297	Silver-seed gourd	carwmB0725
Cla008297	Cucumber (Chinese Long) v3	cucwmB507
Cla008297	Watermelon (97103) v2	wmwmbB118
Cla008297	Watermelon (97103) v2	wmwmbB120
Cla008297	Wax gourd	wgowmB365
Cla008297	Watermelon (97103) v1	wmwmB086
Cla008297	Watermelon (97103) v1	wmwmB090
Cla008297	Cucurbita maxima (Rimu)	cmawmB185
Cla008297	Cucurbita maxima (Rimu)	cmawmB517
Cla008297	Cucurbita moschata (Rifu)	cmowmB173
Cla008297	Cucurbita moschata (Rifu)	cmowmB507
Cla008297	Cucurbita moschata (Rifu)	cmowmB550
Cla008297	Melon (DHL92) v3.5.1	mewmB093
Cla008297	Watermelon (Charleston Gray)	wcgwmB185
Cla008297	Cucumber (Chinese Long) v2	cuwmB481
Cla008297	Cucurbita pepo (Zucchini)	cpewmB507
Cla008297	Cucurbita pepo (Zucchini)	cpewmB280
Cla008297	Cucurbita pepo (Zucchini)	cpewmB693