CsaV3_1G012730 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G012730
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	yrdC domain-containing protein, mitochondrial
Location	chr1 : 7982516 .. 7986179 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCGTTTCAATCTTTCATCCCCTTTATCCTTTTGTATGTTTATTGTAGGATTGAAACATGAATTGACATAAATTATTATATTTTAGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTGTGCAATCGTCTTATTTTGTGAGTTTTGATTTTTTTTGGTGTGGAAGTTGATGTTACAACACCTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCAATGAGGATAGTGCTTTATAAATAGTAGTACAATCTTTCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGCTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCGCTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGGCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAATATTGGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTTGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTTATTTTTTATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTTCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTTAAAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTACATCTCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTAGAGAGGTTTTTTTTTTTTTTTTTTTTTGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAACAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTATTTAATTCAAAATGTTCTGTCAAAAGTGTCAACTTTTATAATGCAATGACTTAAAGTCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACGTTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATTTAAGATAAGGGACTAAAAATGCCTTTTGTAACCAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAATAAGATATTAATTTTTCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTCCTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

mRNA sequence

ATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Coding sequence (CDS)

ATGGCTGACAGTCTCTCTCTAATCAGAACGTTTACAACTTTTCCCTCTTCTCAACTGGGTTCTTCCAATTATGGGATAGTTTCGTTCTTGCAACGAAATAGAGGATCAAGGGTTAGTTTTCTTAAAACGAATTGGAGTTTAGAGAAGTGTTGTATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA

Protein sequence

MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI

Homology

[Close]

BLAST of CsaV3_1G012730 vs. NCBI nr
Match: XP_004148791.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN64719.1 hypothetical protein Csa_1G077210 [Cucumis sativus])

HSP 1 Score: 538.9 bits (1387), Expect = 1.0e-149
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA
Sbjct: 8   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD
Sbjct: 128 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 247

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 275
           TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 248 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CsaV3_1G012730 vs. NCBI nr
Match: XP_008465284.1 (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 1.7e-144
Identity = 263/274 (95.99%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           MADSLSLIRTF TFPSS LGSSNYGIVSFLQRNRGSRVSFLKT+WSLEKCCM VENCLQA
Sbjct: 8   MADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD
Sbjct: 128 VGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDL 247

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 275
           TE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 248 TERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of CsaV3_1G012730 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.8 bits (1231), Expect = 1.2e-131
Identity = 241/271 (88.93%), Postives = 256/271 (94.46%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           M + LSLIRTF TFPSSQLG+ NYG VSFL  NRGSR++F KT WSLEKC MRVEN LQA
Sbjct: 13  MVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTVWSLEKCSMRVENSLQA 72

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKLTSPLAIC
Sbjct: 73  LRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAIC 132

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIGVRVPDAD
Sbjct: 133 VGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDAD 192

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRS TALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 193 FIRLISRRSGTALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 252

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAA 272
           T++GTFKIIRAGSA+EQT+ATL+RYSLLE A
Sbjct: 253 TKRGTFKIIRAGSAKEQTVATLKRYSLLEDA 283

[Close]

BLAST of CsaV3_1G012730 vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 477.2 bits (1227), Expect = 3.6e-131
Identity = 240/271 (88.56%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           M + LSLIRTF TFPSSQLG+ NYG VSFL  NRGSR++F KT WSLEKC MRVEN LQA
Sbjct: 13  MVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLEKCSMRVENSLQA 72

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEAT+ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKLTSPLAIC
Sbjct: 73  LRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAIC 132

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIGVRVPDAD
Sbjct: 133 VGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDAD 192

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRS TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 193 FIRLISRRSGTALALTSANLSGRPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 252

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAA 272
           T++G FKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 253 TKRGMFKIIRAGSAKEQTVATLERYSLLEEA 283

[Close]

BLAST of CsaV3_1G012730 vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 473.4 bits (1217), Expect = 5.2e-130
Identity = 237/271 (87.45%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           M + LS+IRTF TFPSSQLG+ +YG VSFL  NRGSR++F KT WSLEKC MRVEN LQA
Sbjct: 13  MVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMRVENSLQA 72

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEA +ALKAGKVIAVPTDTLYGLACDACS+EAV+RIYEIKGRKLTSPLAIC
Sbjct: 73  LRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDACSSEAVNRIYEIKGRKLTSPLAIC 132

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGESS+L+KSLNPGL+SIGVRVPDAD
Sbjct: 133 VGDVSDITRFAVADHLPHGLLDSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDAD 192

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRS TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRAGSTIIDL
Sbjct: 193 FIRLISRRSGTALALTSANLSGQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDL 252

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAA 272
           T++GTFKIIRAGSA+EQT+ATLERYSLLE A
Sbjct: 253 TKRGTFKIIRAGSAKEQTVATLERYSLLEEA 283

[Close]

BLAST of CsaV3_1G012730 vs. TAIR10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 329.3 bits (843), Expect = 2.2e-90
Identity = 173/270 (64.07%), Postives = 207/270 (76.67%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTN-WSLEKC--CMRVENC 60
           +A+ L  I    + P  + G S     S   ++R  R    K   WSLE+   C+  ++C
Sbjct: 7   LAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVVSKSC 66

Query: 61  LQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPL 120
           L  + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACDACS EAV RIYEIKGRKLTSPL
Sbjct: 67  L--VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPL 126

Query: 121 AICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVP 180
           AICVGDV DI R A T HLP GLLDSLLPGPVT+VL+RGESS+L+KSLNPG+ +IGVRVP
Sbjct: 127 AICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVP 186

Query: 181 DADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI 240
           D +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYVYDGG+LP+GRAGSTI
Sbjct: 187 DCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTI 246

Query: 241 IDLTEQGTFKIIRAGSAEEQTIATLERYSL 268
           +DLT+ G +KIIR GSA++ T+A LE+Y L
Sbjct: 247 VDLTKVGKYKIIRPGSAKQATVAILEKYLL 274

[Close]

BLAST of CsaV3_1G012730 vs. TAIR10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 63/210 (30.00%), Postives = 93/210 (44.29%), Query Frame = 0


Query: 70  QEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITR 129
           Q   D LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  
Sbjct: 84  QPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSLRDIDT 143

Query: 130 FAVTDHLPSG----------LLDSLLPGPVTVVLKR-----------GESSVLDKSLNPG 189
           F  T   P G           +   LPGP T +L             G +SV   S    
Sbjct: 144 F--TMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASRK-- 203

Query: 190 LDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVY 249
             ++GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V 
Sbjct: 204 --NVGVRISDDALCQAILQQMDAPLICTS--VKGPKENEWMIDPTAIGDIYGPEGLDFVV 263

Query: 250 DGGVLPAGRAGSTIIDLTEQGTF-KIIRAG 253
           DGG+  A    STI+D+T  G + K+IR G
Sbjct: 264 DGGIRVA--EPSTIVDMT--GPYPKVIREG 281

[Close]

BLAST of CsaV3_1G012730 vs. Swiss-Prot
Match: sp|Q0VC80|YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.5e-46
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A  +EA+  +Y +KGR  T PLA+C+G V+D+ R+ 
Sbjct: 71  AVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYC 130

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++    
Sbjct: 131 HV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFGG 190

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 251
            LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G F
Sbjct: 191 PLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKF 250

Query: 252 KIIRAGSAEEQTIATLERYSLL 269
            IIR G A E T A L+ Y LL
Sbjct: 251 GIIRPGCALESTSAILQEYGLL 269

[Close]

BLAST of CsaV3_1G012730 vs. Swiss-Prot
Match: sp|Q86U90|YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-43
Identity = 98/208 (47.12%), Postives = 135/208 (64.90%), Query Frame = 0


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 73  AVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYC 132

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P GLL  LLPGPVT+V++R E   L+K LNP    +G+R+PD  F++ +++  E 
Sbjct: 133 RV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQMFEG 192

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 251
            LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G F
Sbjct: 193 PLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKF 252

Query: 252 KIIRAGSAEEQTIATL-ERYSLLEAAAT 274
            IIR G A E T A L ++Y LL + A+
Sbjct: 253 GIIRPGCALESTTAILQQKYGLLPSHAS 277

[Close]

BLAST of CsaV3_1G012730 vs. Swiss-Prot
Match: sp|Q499R4|YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A  + A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQMFGG 193

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 251
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKF 253

Query: 252 KIIRAGSAEEQTIATLE-RYSLL 269
            IIR+G A E T A L+ +Y LL
Sbjct: 254 GIIRSGCALENTTAILQGKYGLL 273

[Close]

BLAST of CsaV3_1G012730 vs. Swiss-Prot
Match: sp|Q3U5F4|YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 72  ATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFA 131
           A   L+AG V+AVPTDTLYGLAC A S+ A+  +Y +KGR    PLA+C+G V+D+ R+ 
Sbjct: 74  AVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYC 133

Query: 132 VTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSET 191
               +P  LL+ L PGPVT+V++R E   L+K LNP    +G+R+PD  F+  +++    
Sbjct: 134 QV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQMFGG 193

Query: 192 ALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTEQGTF 251
            LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G F
Sbjct: 194 PLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKF 253

Query: 252 KIIRAGSAEEQTIATL-ERYSLL 269
            IIR G A E T + L ++Y LL
Sbjct: 254 GIIRPGCALENTTSILQQKYGLL 273

[Close]

BLAST of CsaV3_1G012730 vs. Swiss-Prot
Match: sp|Q60369|TSAC_METJA (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-21
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 79  GKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 138
           GK++   TDTLYG++ +A + +AV ++Y IK R+   PL+ICV D ++I ++A  + L  
Sbjct: 32  GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91

Query: 139 GLLDSLLPGPVTVVLKR--GESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALT 198
            ++D  LPGP+T++LK+  G   ++ K      D IG+R+PD   IR +   S   L  T
Sbjct: 92  KIIDKFLPGPLTIILKKKPGIPDIVAK------DYIGIRIPDEPIIREL---SIVPLTTT 151

Query: 199 SANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAE 258
           SAN+SG+ S   V++ +  + +   YV D G     +  STII + E      IR G   
Sbjct: 152 SANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP-STIIKI-EDDKIISIREGVIP 205

Query: 259 EQTIA 261
            Q +A
Sbjct: 212 IQKLA 205

[Close]

BLAST of CsaV3_1G012730 vs. TrEMBL
Match: tr|A0A0A0LUP4|A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 6.7e-150
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA
Sbjct: 8   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD
Sbjct: 128 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 247

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 275
           TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI
Sbjct: 248 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 281

[Close]

BLAST of CsaV3_1G012730 vs. TrEMBL
Match: tr|A0A1S3CNI2|A0A1S3CNI2_CUCME (yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502936 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 1.1e-144
Identity = 263/274 (95.99%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 1   MADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMRVENCLQA 60
           MADSLSLIRTF TFPSS LGSSNYGIVSFLQRNRGSRVSFLKT+WSLEKCCM VENCLQA
Sbjct: 8   MADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQA 67

Query: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 120
           LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC
Sbjct: 68  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAIC 127

Query: 121 VGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 180
           VG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD
Sbjct: 128 VGGVSDITRYAITDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDAD 187

Query: 181 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDL 240
           FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DL
Sbjct: 188 FIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDL 247

Query: 241 TEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI 275
           TE+GTFKIIRAGSAE+QTIATL+RYSLLEAAATI
Sbjct: 248 TERGTFKIIRAGSAEKQTIATLQRYSLLEAAATI 281

[Close]

BLAST of CsaV3_1G012730 vs. TrEMBL
Match: tr|A0A061GWW4|A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.3e-97
Identity = 185/255 (72.55%), Postives = 216/255 (84.71%), Query Frame = 0


Query: 20  GSSNYGIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKA 79
           G    G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKA
Sbjct: 72  GVPKLGFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKA 131

Query: 80  GKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 139
           GKVIAVPTDTLYG ACDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP 
Sbjct: 132 GKVIAVPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPY 191

Query: 140 GLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSA 199
           GLLDSLLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSA
Sbjct: 192 GLLDSLLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSA 251

Query: 200 NLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQT 259
           NLSGQPSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T
Sbjct: 252 NLSGQPSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEET 311

Query: 260 IATLERYSLLEAAAT 274
           +A LE+YSLLE AA+
Sbjct: 312 VAILEKYSLLEEAAS 326

[Close]

BLAST of CsaV3_1G012730 vs. TrEMBL
Match: tr|A0A061GXZ3|A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_042043 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.0e-97
Identity = 184/250 (73.60%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 25  GIVSFLQRNRGSRVSFLKTNWS-LEKCCMRVENCLQALRPASEAFAQEATDALKAGKVIA 84
           G V FLQ+ R  R  F K   S +E+C + VE+ L  + PA++ +A EA  ALKAGKVIA
Sbjct: 27  GFVPFLQQKRRFRGGFSKKMGSNVERCEVGVESKLGLVHPATKFYADEAVIALKAGKVIA 86

Query: 85  VPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDS 144
           VPTDTLYG ACDACS+EAV++IYEIKGRK TSPLAICVGDV DI RFAVTDHLP GLLDS
Sbjct: 87  VPTDTLYGFACDACSSEAVNKIYEIKGRKHTSPLAICVGDVPDIKRFAVTDHLPYGLLDS 146

Query: 145 LLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQ 204
           LLPGPVTVVL RGESS+L+KSLNPGLDSIGVRVPD+DFIR+I+R +E+ALALTSANLSGQ
Sbjct: 147 LLPGPVTVVLGRGESSLLEKSLNPGLDSIGVRVPDSDFIRIIARDAESALALTSANLSGQ 206

Query: 205 PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLE 264
           PSSV +NDFENLW+HCAYVYDGGVLPAGRAGST++DLT+ G +KI+R GSA+E+T+A LE
Sbjct: 207 PSSVSINDFENLWEHCAYVYDGGVLPAGRAGSTVVDLTKPGKYKILRPGSAKEETVAILE 266

Query: 265 RYSLLEAAAT 274
           +YSLLE AA+
Sbjct: 267 KYSLLEEAAS 276

[Close]

BLAST of CsaV3_1G012730 vs. TrEMBL
Match: tr|A0A2I4EJE0|A0A2I4EJE0_9ROSI (yrdC domain-containing protein, mitochondrial isoform X1 OS=Juglans regia OX=51240 GN=LOC108990110 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 5.6e-96
Identity = 180/253 (71.15%), Postives = 211/253 (83.40%), Query Frame = 0


Query: 20  GSSNYGIVSFLQRNRGSRVSFL-KTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKA 79
           G    G V FL +NR   +    K   S+EKC + +EN L  +RPA+E +A+EA +ALKA
Sbjct: 32  GVPKIGFVPFLHQNRMLTLGVSNKMVQSMEKCDVGIENTLGVVRPATEEYAEEAMEALKA 91

Query: 80  GKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPS 139
           GKVIAVPTDTLYG ACDACS +AV+RIYEIKGRK TSPLAICVGDVSDI RFA+TDHLP 
Sbjct: 92  GKVIAVPTDTLYGFACDACSLQAVNRIYEIKGRKHTSPLAICVGDVSDIKRFAITDHLPH 151

Query: 140 GLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSA 199
           GLLDSLLPGPVTV+L+RGESS+L++SLNPGLD+IGVRVPD +FIR+++R S +ALALTSA
Sbjct: 152 GLLDSLLPGPVTVILRRGESSILERSLNPGLDTIGVRVPDCNFIRVVARGSGSALALTSA 211

Query: 200 NLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQT 259
           NLSGQPSSVC+ DFEN WQHCA VYDGGVLP+GRAGSTI+DLT  G FKI+R GSA+E+T
Sbjct: 212 NLSGQPSSVCIKDFENQWQHCALVYDGGVLPSGRAGSTIVDLTGPGKFKILRPGSAKEET 271

Query: 260 IATLERYSLLEAA 272
           IA LE +SLLE A
Sbjct: 272 IAILESHSLLEEA 284

The following BLAST results are available for this feature:

BLAST of CsaV3_1G012730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148791.1	1.0e-149	100.00	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus] >KGN6...	[more]
XP_008465284.1	1.7e-144	95.99	PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]	[more]
XP_023521571.1	1.2e-131	88.93	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	3.6e-131	88.56	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_022948702.1	5.2e-130	87.45	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]

BLAST of CsaV3_1G012730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60590.2	2.2e-90	64.07	DHBP synthase RibB-like alpha/beta domain	[more]
AT3G01920.1	1.3e-10	30.00	DHBP synthase RibB-like alpha/beta domain	[more]

BLAST of CsaV3_1G012730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0VC80\|YRDC_BOVIN	5.5e-46	48.51	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
sp\|Q86U90\|YRDC_HUMAN	1.1e-43	47.12	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
sp\|Q499R4\|YRDC_RAT	1.3e-42	46.80	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
sp\|Q3U5F4\|YRDC_MOUSE	1.6e-42	46.80	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
sp\|Q60369\|TSAC_METJA	1.6e-21	35.68	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of CsaV3_1G012730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUP4\|A0A0A0LUP4_CUCSA	6.7e-150	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=4 SV=1	[more]
tr\|A0A1S3CNI2\|A0A1S3CNI2_CUCME	1.1e-144	95.99	yrdC domain-containing protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A061GWW4\|A0A061GWW4_THECC	2.3e-97	72.55	DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao OX=3641 G...	[more]
tr\|A0A061GXZ3\|A0A061GXZ3_THECC	3.0e-97	73.60	DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma caca...	[more]
tr\|A0A2I4EJE0\|A0A2I4EJE0_9ROSI	5.6e-96	71.15	yrdC domain-containing protein, mitochondrial isoform X1 OS=Juglans regia OX=512...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003725	double-stranded RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017945	DHBP_synth_RibB-like_a/b_dom
IPR006070	YrdC-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0002949	tRNA threonylcarbamoyladenosine modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G012730.1	CsaV3_1G012730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.870.10		coord: 59..264 e-value: 3.9E-55 score: 188.0
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 51..266
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 51..266
IPR006070	YrdC-like domain	TIGRFAM	TIGR00057	TIGR00057	coord: 68..259 e-value: 3.2E-43 score: 145.3
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 75..252 e-value: 1.2E-46 score: 158.4
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 66..254 score: 25.872
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	SSF55821	YrdC/RibB	coord: 67..254

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G012730	CSPI01G12530	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G012730	Cucsa.127080	Cucumber (Gy14) v1	cgycucB174
CsaV3_1G012730	CmaCh01G005550	Cucurbita maxima (Rimu)	cmacucB0518
CsaV3_1G012730	CmoCh01G005820	Cucurbita moschata (Rifu)	cmocucB0505
CsaV3_1G012730	Cp4.1LG02g13010	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G012730	CsGy1G012560	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G012730	Carg12328	Silver-seed gourd	carcucB0474
CsaV3_1G012730	Cla008297	Watermelon (97103) v1	cucwmB015
CsaV3_1G012730	MELO3C026847	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G012730	ClCG03G002070	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G012730	MELO3C026847.2	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G012730	Cla97C03G053070	Watermelon (97103) v2	cucwmbB032
CsaV3_1G012730	Bhi08G000299	Wax gourd	cucwgoB045

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None