Cucsa.127080.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGGTATGCTATTCCTATTATGGGTTTTTTGTGCAATCGTCTTATTTTGTGAGTTTTGATTTTTTTtGGTGTGGAAGTTGATGTTACAACACCTGTTTTgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATGAGGATAGTGCTTTATAAATAGTAGTACAATCTTtCTTAAGAGGGGAGATTGATATATCAGTGGTCTTGTTTAGTACAAACAAAGTTCTTGGTGAGAGGTCTTGGTCAGGAGTGCTCACTCCCTTGGTTGTGTCATGGGTGGTGATCGTAGGAGATGTCACATTATTGTTAAAATTAAGACTCTTTTGAGTTGGCGCTTGGCCGGTAGTCATCTAGGAGGAATATGGTGGATGGTGACTGGTGATGGGGAACAGCAGGGGGAGGTTTCTTATTTAGTTAGCATGGTTAAGAAATGCTTAAAGAACTGATTGCTATTACCATACCATCAAAGTGTATCTTTCTGTTTGGTAGGTCAATCATAGGAACTCCAGAATTATACATGCTTAGTTTGAAGCAATTCTATATTAGGTGACCTGAAAATATTCCTAGAAAGCATGTGGGTGCGAACCAAACATGTTGAAAAGACTCGTGTTGGTTTGTGGAGACAATCTTCACTCTTGGAAGCAGTTTAAGACGAGCAAACAGTGTGACCAAGTCACTAGAGAATGCCGGGGCTATCAAGTTCCAAATCTGAATTCCAAATTCTAGTTTGAATCTTGGGCTCGGGGCATTATGAAAATTTTGTGAAAAAAAAAaTATTGGGAGAGATGTGGTTAGGATTCCTTGTTTGGGCCTTAGTTCTTTAGGATTTCTGTATTTATCTCTCTTATGCACAACAACTAGGACTCTTTTTtGTTTTAACATTTTTGTTAGGCTAATATTGTGGTAGGCTCTTATTCCTTTTTATTTTTtATTTTTtATATGTAGTATGTATTCTTTCACTTGTACTAACGATAGCTTATGCTCAGTTTTCATAAAAAATAACAATAGAAAATAGACTTTTATGTAAAATTTTATTCTTAAACTTCAACATCAATATTTATTTGCTGATCTGTGCATAAGTCAGTTGACTGTTTATAAGAAGATAAAATCATCTTTTTTTTtAAAAATCTCAAAGATGACAGTGAGCGATTACGTAAAAAACTTTCATTTATTTGATTGCCTACATCTCTCTTAGTTGGCTCTTTCTTGTTCCAAAATCCACCATATTTCCCGTTTGATAGAATAATTATTTTACTGCATGAATTCTGAGGTAAATACTGCATAGTGATATACAATGTTATAAAATTGAGAGATACTTCTGAAATACATCCTTGTGTTGGAACATACTCGTTACCAGGCCCCACAGTCTTGAGGAATATAAAATGGTTATCGATTTGGTATAAATATTGATAAGTTTTTCAACTTCGTAAAAACACTCTTCTTTCATGTAATTATAGTGTAATTATAGGAAGTATATTCTATAATGTTGTTAAACAATGAGATCTGTCTTTCCGTAATGGAGGGTAACGCAATATTCATTTTCAAAGCACATGCGCAAAAAGTTGATGAACAAAATTaGAGAGGTTTTTTtTTTTTTTTTTTtGTGAAACTATATGATCAAAGCAACCATAAAATTAATCACGTTGCAGTTTGCTTTTATTTAATTGTGGCTTCTGTGGGAATTGATTTTGCAGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTATATATCAGAAATCTGCTTGTTTATGCTGAGGTAGTTAATAGTGCATTAAAGGTTGAAAGTGGTTTTGAACAAGTAGCATTTAGGAGCATTGTTTGATTGAAATAAAGTAAATAGGTTGAACAACATTTCTGATCCTTAGACTGAAGGAGCAATTGAATCGATAAACTTTGGATTGTTCATGTACTTTAAATTTATACTAATCTAACCTCTATTTAATTCAAAATGTTCTGTCAAAAGTGTCAACTTTTATAATGCAATGACTTAAAGTCTTTATTTCTTAGATACACCTATGGTATCTAATTTGTTTTTCAATCTACGTTTGGAAGAAGTCTCGTTAAATCTTTAACAATATTTATTCACGATAGGGTCTAAAGTCACTAAACTGTTACTTCCATTTAAGATAAGGGACTAAAAATGCCTTTTGTAACCAAGAAAGAGTTCTTGAGAAACTTTTATAGGTAGGGTATTTAACAACAGTTGGGCTGGTTATGATAATCTTTCAGATATTCTGTTCTCTTCTTTTCACCTGATCCCATATCATTTCTTGGTGACTTGTAACCTATTGTTATAAGTGAGAAGCAGATGGGGCTTTGAGAGAGCTATGAGTTCTTGCGAGCTTACTTATTAACATTTTTCTCTCTTACCAAACTTTAGCAGAAAATTATTTTCTTCAAAGCAATTTCAAATGCCCTTCTTGGAAATTAGTATATCTCACCAACTATAAAAaTAAGATATTAATTTTtCACTTCCCTTGTTTTGTTGGATTGTTCTATATTATTTAAATAGTTGCCCCCTCCTCCATGTTACAACCTGCATATCTGAGATTATGTTCAGTTATATTTTAGTCTCCAAACTTCCCGTTGTCTGAGTTTTTACATTTTAGGTATTTTGCAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGGTACATTTCTTCTTGTGTTTCTTCTATTTACCGTAAAAAGTGAAAATAGTCTTCTATTGCAATGACTTTGTCCTTTGATTCTGAAGTTGTGATTCAAAAGATAGCAAATCAGAAGTGATTATGTTTCATTGTGATAGTTTTCTCATGATGTTCACTGTACATTTGCAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTtAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTtCTAAGATGACTTATTTTCAAAATATCAAAAC ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGAACATCTGAATCTAATCATGTTCCTAAGCATCTGTTCATTATCATAGAGGTTCCAAAGTTATTTCGGTAGGGTGATTGACTAGAAGAAAAGTGTTTTTCAAAAAGTTTTTTCTTTCTTTTTTTTAACTCTTTTGATGAAAAGGGGTTTAAAATAGATTTTTAAAGTGTTTCATAAGTCTGTTATTTTTAATGATTGTCAAACACGTCAAATTTTTTTCTAAGATGACTTATTTTCAAAATATCAAAAC ATGCGTGTGGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCCACTGATACTCTTTATGGACTCGCTTGTGATGCTTGTTCTGCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGCTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTGACTGTTGTTCTGAAAAGAGGTGAATCGAGTGTTCTTGACAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCTGATGCTGACTTTATTCGGCTGATTTCACGTAGATCAGAGACAGCATTAGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAATCTATGGCAACACTGTGCCTATGTATACGATGGGGGTGTTCTTCCTGCTGGACGAGCAGGCTCAACGATCATCGACCTCACTGAGCAAGGCACATTTAAGATTATAAGAGCTGGAAGTGCAGAGGAGCAGACTATTGCAACACTTGAAAGGTATTCACTATTAGAAGCAGCAGCTACTATTTGA MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIATLERYSLLEAAATI*
BLAST of Cucsa.127080.1 vs. Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 4.9e-45 Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 5.9e-43 Identity = 98/208 (47.12%), Postives = 135/208 (64.90%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41 Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.5e-41 Identity = 95/203 (46.80%), Postives = 131/203 (64.53%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. Swiss-Prot
Match: SUA5_PYRAB (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 5.1e-18 Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1) HSP 1 Score: 436.4 bits (1121), Expect = 2.1e-119 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TrEMBL
Match: A0A061GWW4_THECC (DHBP synthase RibB-like alpha/beta domain isoform 1 OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.3e-92 Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TrEMBL
Match: A0A061GXZ3_THECC (DHBP synthase RibB-like alpha/beta domain isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_042043 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.3e-92 Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TrEMBL
Match: A0A059D561_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02494 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.1e-91 Identity = 168/217 (77.42%), Postives = 196/217 (90.32%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TrEMBL
Match: A0A0D2VKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G266600 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 4.1e-91 Identity = 168/216 (77.78%), Postives = 195/216 (90.28%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TAIR10
Match: AT5G60590.2 (AT5G60590.2 DHBP synthase RibB-like alpha/beta domain) HSP 1 Score: 319.7 bits (818), Expect = 1.4e-87 Identity = 160/221 (72.40%), Postives = 186/221 (84.16%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. TAIR10
Match: AT3G01920.1 (AT3G01920.1 DHBP synthase RibB-like alpha/beta domain) HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09 Identity = 63/210 (30.00%), Postives = 93/210 (44.29%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus]) HSP 1 Score: 436.4 bits (1121), Expect = 3.0e-119 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]) HSP 1 Score: 424.9 bits (1091), Expect = 9.0e-116 Identity = 215/223 (96.41%), Postives = 221/223 (99.10%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. NCBI nr
Match: gi|590590392|ref|XP_007016721.1| (DHBP synthase RibB-like alpha/beta domain isoform 1 [Theobroma cacao]) HSP 1 Score: 347.4 bits (890), Expect = 1.8e-92 Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. NCBI nr
Match: gi|590590395|ref|XP_007016722.1| (DHBP synthase RibB-like alpha/beta domain isoform 2, partial [Theobroma cacao]) HSP 1 Score: 347.4 bits (890), Expect = 1.8e-92 Identity = 172/220 (78.18%), Postives = 199/220 (90.45%), Query Frame = 1
BLAST of Cucsa.127080.1 vs. NCBI nr
Match: gi|702272639|ref|XP_010043742.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Eucalyptus grandis]) HSP 1 Score: 344.4 bits (882), Expect = 1.5e-91 Identity = 168/217 (77.42%), Postives = 196/217 (90.32%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
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