CU090252 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU090252
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 7921602 .. 7921952 (-)
Sequence length270
The following sequences are available for this feature:

transcribed_cluster sequence

AAAGAGTATCAGTGGGGACAGCAATTAACCTTTTCCCAGCTTTAAGAGCATCTGTAGCCTCTTGAGCAAAAGCTTCAGAGGCAGGACGAAGTGCTTGCAAACAATTCTCCACACGCATACAACACTTCTCTAAACTCCAATTCGTTTTTAAGAAAACTTAACCCTTGATCCTCTATTTCGTTGCAAGAACGAAACTATCCCATAATTGGAAGAACCCAGTTGAGAAGAGGGAAAAGTTGTAAACGTTCTGAATTAAGAGAGAGACTGTCA
Library categoryESTs
gynoecious flower library2
BLAST of CU090252 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-18
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -3

Query: 2   FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGK +IAVPTDTL
Sbjct: 47  FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGK-VIAVPTDTL 96

Query: 62  121
           
Sbjct: 107 96

Query: 122 155
           
Sbjct: 167 96

BLAST of CU090252 vs. TrEMBL
Match: A0A0A0LUP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-02
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = -1

Query: 154 QLGSSNYGIVSFLQRNRGSRVKF 213
           QLGSSNYGIVSFLQRNRGSRV F
Sbjct: 25  QLGSSNYGIVSFLQRNRGSRVSF 47

Query: 214 223
           
Sbjct: 85  47


HSP 2 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -3

Query: 2   KTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           K  WSLEKC M V+N L A+RPA++ +A+EA +ALKAG  +IAVPTDTL
Sbjct: 45  KMAWSLEKCDMDVKNKLGAVRPATKLYAEEAVEALKAG-NVIAVPTDTL 92

Query: 62  121
           
Sbjct: 105 92

Query: 122 149
           
Sbjct: 165 92

BLAST of CU090252 vs. NCBI nr
Match: gi|449462123|ref|XP_004148791.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-18
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = -3

Query: 2   FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGK +IAVPTDTL
Sbjct: 47  FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGK-VIAVPTDTL 96

Query: 62  121
           
Sbjct: 107 96

Query: 122 155
           
Sbjct: 167 96

BLAST of CU090252 vs. NCBI nr
Match: gi|659130663|ref|XP_008465284.1| (PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = -3

Query: 2   FLKTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           FLKT+WSLEKCCM VENCLQALRPASEAFAQEATDALKAGK +IAVPTDTL
Sbjct: 47  FLKTDWSLEKCCMPVENCLQALRPASEAFAQEATDALKAGK-VIAVPTDTL 96

Query: 62  121
           
Sbjct: 107 96

Query: 122 155
           
Sbjct: 167 96

BLAST of CU090252 vs. NCBI nr
Match: gi|802551497|ref|XP_012064831.1| (PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -3

Query: 2   KTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           K  WSLEKC M V+N L A+RPA++ +A+EA +ALKAG  +IAVPTDTL
Sbjct: 52  KMAWSLEKCDMDVKNKLGAVRPATKLYAEEAVEALKAG-NVIAVPTDTL 99

Query: 62  121
           
Sbjct: 112 99

Query: 122 149
           
Sbjct: 172 99

BLAST of CU090252 vs. NCBI nr
Match: gi|643738073|gb|KDP44061.1| (hypothetical protein JCGZ_05528 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -3

Query: 2   KTNWSLEKCCMRVENCLQALRPASEAFAQEATDALKAGKRLIAVPTDTL 61
           K  WSLEKC M V+N L A+RPA++ +A+EA +ALKAG  +IAVPTDTL
Sbjct: 45  KMAWSLEKCDMDVKNKLGAVRPATKLYAEEAVEALKAG-NVIAVPTDTL 92

Query: 62  121
           
Sbjct: 105 92

Query: 122 149
           
Sbjct: 165 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LUP4_CUCSA4.1e-1896.08Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1[more]
A0A0A0LUP4_CUCSA1.4e-0295.65Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449462123|ref|XP_004148791.1|5.8e-1896.08PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis sativus][more]
gi|659130663|ref|XP_008465284.1|1.4e-1692.16PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo][more]
gi|802551497|ref|XP_012064831.1|3.0e-0663.27PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [J... [more]
gi|643738073|gb|KDP44061.1|3.0e-0663.27hypothetical protein JCGZ_05528 [Jatropha curcas][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G077210Csa1G077210gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0114071G0114071EST
G0116762G0116762EST