Csa1G050230 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050230
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5793361 .. 5793929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCGCATCTTTCCATCCTTTCCTTAAAAACATTTTTGCTTAGCTTCCTAATTCATTTTTTTTAAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAATTTTTAGCCACGGAGCCGTCATTCGAGATTTATGGAGGAGGGATTAGCTGTTGTTCTCTTGACGCCGGTCGTCGGAGGCCACTTCCGGTAGCTAATTATGAGTACATAAATATTAATGGTCGTCGTAGTTTTTCTCTGATTTAGAAGTGATTATTAGATCGATAAGATATATATATTCTTTATTTCTATTTTTATTTTCCCTTAATTCGTTTTTTCTTTTTCGCGTTATTAATTTTGTACTCTTTGAAAATTATTTCTTAGTATAAATATATTTTGTTTTCT

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Protein sequence

MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS*
Homology
[Close]
BLAST of Csa1G050230 vs. TrEMBL
Match: A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]
BLAST of Csa1G050230 vs. TrEMBL
Match: A0A061FZA4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R+ Q                  KQIQCNK K PKFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRQQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIA 69
          +LLLACIA
Sbjct: 61 ILLLACIA 68

[Close]
BLAST of Csa1G050230 vs. TrEMBL
Match: A0A151TE32_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 42/70 (60.00%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R  QQ    Q     +      KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRNKQQQAQTQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIAFA 71
          +L LACIA A
Sbjct: 61 ILFLACIACA 65

[Close]
BLAST of Csa1G050230 vs. TrEMBL
Match: I1K083_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R  Q     Q     +      KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIAFA 71
          +L LACIA+A
Sbjct: 61 ILFLACIAYA 65

[Close]
BLAST of Csa1G050230 vs. TrEMBL
Match: A0A0B2RRF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R  Q     Q     +      KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIAFA 71
          +L LACIA+A
Sbjct: 61 ILFLACIAYA 65

[Close]
BLAST of Csa1G050230 vs. TAIR10
Match: AT5G50335.1 (AT5G50335.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 

Query: 37 CNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS 72
          CNK K  +FKRS+SN++ DGASSA+ LLACIA +S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSS 69

[Close]
BLAST of Csa1G050230 vs. NCBI nr
Match: gi|700209288|gb|KGN64384.1| (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]
BLAST of Csa1G050230 vs. NCBI nr
Match: gi|659067431|ref|XP_008439407.1| (PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAA---ATAKQIQCNKAKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQV PPQTAV+AVAAA   AT KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 72
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 74

[Close]
BLAST of Csa1G050230 vs. NCBI nr
Match: gi|590669889|ref|XP_007037902.1| (Uncharacterized protein TCM_014581 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R+ Q                  KQIQCNK K PKFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRQQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIA 69
          +LLLACIA
Sbjct: 61 ILLLACIA 68

[Close]
BLAST of Csa1G050230 vs. NCBI nr
Match: gi|1012354132|gb|KYP65319.1| (hypothetical protein KK1_011552 [Cajanus cajan])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 42/70 (60.00%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R  QQ    Q     +      KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRNKQQQAQTQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIAFA 71
          +L LACIA A
Sbjct: 61 ILFLACIACA 65

[Close]
BLAST of Csa1G050230 vs. NCBI nr
Match: gi|734407586|gb|KHN34392.1| (hypothetical protein glysoja_016720 [Glycine soja])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE ++R  Q     Q     +      KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 61 MLLLACIAFA 71
          +L LACIA+A
Sbjct: 61 ILFLACIAYA 65

The following BLAST results are available for this feature:
BLAST of Csa1G050230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTS0_CUCSA2.2e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1[more]
A0A061FZA4_THECC1.8e-1160.29Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1[more]
A0A151TE32_CAJCA1.9e-1060.00Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1[more]
I1K083_SOYBN1.9e-1058.57Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1[more]
A0A0B2RRF8_GLYSO1.9e-1058.57Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1[more]
BLAST of Csa1G050230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50335.11.2e-0665.71 unknown protein[more]
BLAST of Csa1G050230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209288|gb|KGN64384.1|3.2e-30100.00hypothetical protein Csa_1G050230 [Cucumis sativus][more]
gi|659067431|ref|XP_008439407.1|2.1e-2690.54PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo][more]
gi|590669889|ref|XP_007037902.1|2.5e-1160.29Uncharacterized protein TCM_014581 [Theobroma cacao][more]
gi|1012354132|gb|KYP65319.1|2.8e-1060.00hypothetical protein KK1_011552 [Cajanus cajan][more]
gi|734407586|gb|KHN34392.1|2.8e-1058.57hypothetical protein glysoja_016720 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097641cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050230.1Csa1G050230.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097641CU097641transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38398FAMILY NOT NAMEDcoord: 2..68
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G050230Cla002596Watermelon (97103) v1cuwmB008
Csa1G050230MELO3C002341Melon (DHL92) v3.5.1cumeB027
Csa1G050230ClCG03G003560Watermelon (Charleston Gray)cuwcgB035
Csa1G050230Lsi02G004780Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G050230MELO3C002341.2Melon (DHL92) v3.6.1cumedB022
Csa1G050230Cla97C03G054640Watermelon (97103) v2cuwmbB032
Csa1G050230Bhi08G001396Wax gourdcuwgoB066
Csa1G050230CSPI01G09290Wild cucumber (PI 183967)cpicuB000
Csa1G050230Cucsa.391840Cucumber (Gy14) v1cgycuB547
Csa1G050230CmaCh13G007860Cucurbita maxima (Rimu)cmacuB204
Csa1G050230Cp4.1LG20g03180Cucurbita pepo (Zucchini)cpecuB515
Csa1G050230Cp4.1LG09g09740Cucurbita pepo (Zucchini)cpecuB029
Csa1G050230CsGy1G009320Cucumber (Gy14) v2cgybcuB001
Csa1G050230Carg06779Silver-seed gourdcarcuB0523
Csa1G050230Carg07583Silver-seed gourdcarcuB1017
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G050230Silver-seed gourdcarcuB0393
Csa1G050230Watermelon (97103) v2cuwmbB076
Csa1G050230Wax gourdcuwgoB030
Csa1G050230Cucumber (Chinese Long) v2cucuB002
Csa1G050230Cucumber (Gy14) v1cgycuB225
Csa1G050230Cucurbita maxima (Rimu)cmacuB071
Csa1G050230Cucurbita maxima (Rimu)cmacuB112
Csa1G050230Cucurbita maxima (Rimu)cmacuB390
Csa1G050230Cucurbita moschata (Rifu)cmocuB061
Csa1G050230Cucurbita moschata (Rifu)cmocuB098
Csa1G050230Cucurbita moschata (Rifu)cmocuB189
Csa1G050230Cucurbita moschata (Rifu)cmocuB380
Csa1G050230Melon (DHL92) v3.5.1cumeB051
Csa1G050230Watermelon (Charleston Gray)cuwcgB075
Csa1G050230Watermelon (Charleston Gray)cuwcgB089
Csa1G050230Watermelon (97103) v1cuwmB088
Csa1G050230Cucurbita pepo (Zucchini)cpecuB359
Csa1G050230Cucurbita pepo (Zucchini)cpecuB648
Csa1G050230Bottle gourd (USVL1VR-Ls)culsiB067
Csa1G050230Cucumber (Gy14) v2cgybcuB012
Csa1G050230Melon (DHL92) v3.6.1cumedB043