MELO3C002341.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002341.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At5g50335
Location	chr12 : 24747491 .. 24748085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGAAAAAGAAGAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGATTTTAGAGACGGAGCCGCCATCCGCGATATGGAGGAGGGATTAGCTGTTGTTCTCTCGACGCCGGTCGTCGAAGGCCACTTCCGGTAGCTAATTATGAGTACAGAATATTAATGGTCGCCTTAGTTTTTCTCTGATTTAGGAGTGATTTATTAGATTGCTAAGATATATATTCTTTGTTTTTATTTTGCCCCTAATTAGTTTTTCTTTTTCGCGTTATTAATTATGTACCTTTTTGAAAATTATTTCTCAATATAAATATATTTTCTTTTCTGTTTAATATTTATTTTGTTGCATTTTTTATATATCAGAGATTAATATATGAAAATTTATTGAGGATGGCTTTTA

mRNA sequence

AAAAAAAAAGAAAAAGAAGAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGATTTTAGAGACGGAGCCGCCATCCGCGATATGGAGGAGGGATTAGCTGTTGTTCTCTCGACGCCGGTCGTCGAAGGCCACTTCCGGTAGCTAATTATGAGTACAGAATATTAATGGTCGCCTTAGTTTTTCTCTGATTTAGGAGTGATTTATTAGATTGCTAAGATATATATTCTTTGTTTTTATTTTGCCCCTAATTAGTTTTTCTTTTTCGCGTTATTAATTATGTACCTTTTTGAAAATTATTTCTCAATATAAATATATTTTCTTTTCTGTTTAATATTTATTTTGTTGCATTTTTTATATATCAGAGATTAATATATGAAAATTTATTGAGGATGGCTTTTA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGA

Protein sequence

MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGASSAMLLLACIAFAS

Homology

[Close]

BLAST of MELO3C002341.2 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 55/74 (74.32%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQV P                 KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVHP---PQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 71

[Close]

BLAST of MELO3C002341.2 vs. NCBI nr
Match: XP_019248928.1 (PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata])

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 41/74 (55.41%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVS+VEE ++ + QQ +                  KQ+QCNK K  KFKRSSSNVEEDGA
Sbjct: 1  MVSRVEEAMKIRQQQQE-----------VKNHQVQKQMQCNKGKTIKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSA+LLLACIA AS
Sbjct: 61 SSAILLLACIACAS 63

[Close]

BLAST of MELO3C002341.2 vs. NCBI nr
Match: XP_009786288.1 (PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 41/74 (55.41%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVS+VEE    + QQ +                  KQ+QCNK K  KFKRSSSNVEEDGA
Sbjct: 1  MVSRVEEATNIRQQQQE-----------VKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSA+LLLACIA AS
Sbjct: 61 SSAILLLACIACAS 63

[Close]

BLAST of MELO3C002341.2 vs. NCBI nr
Match: XP_016473869.1 (PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVS+VEE +  + QQ +                  KQ+QCNK K  KFKRSSSNVEEDGA
Sbjct: 1  MVSRVEEAMNIRQQQQE-----------VKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSA+LLLACIA  S
Sbjct: 61 SSAILLLACIACGS 63

[Close]

BLAST of MELO3C002341.2 vs. NCBI nr
Match: PHT79732.1 (hypothetical protein T459_17784 [Capsicum annuum] >PHU15511.1 hypothetical protein BC332_16716 [Capsicum chinense])

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-07
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQI-QCNKTKYPKFKRSSSNVEEDG 60
          MVS+VEE ++ + Q+V+                  KQ+ QCNK K  KFKRSSSNVEEDG
Sbjct: 1  MVSRVEEAMKIRQQEVK-------------NYQMQKQVMQCNKGKAKKFKRSSSNVEEDG 60

Query: 61 ASSAMLLLACIAFAS 75
          ASSA+LLLACIA A+
Sbjct: 61 ASSAILLLACIACAT 62

[Close]

BLAST of MELO3C002341.2 vs. TAIR10
Match: AT5G50335.1 (unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.5e-06
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 40 CNKTKYPKFKRSSSNVEEDGASSAMLLLACIAFAS 75
          CNK K  +FKRS+SN++ DGASSA+ LLACIA +S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSS 69

[Close]

BLAST of MELO3C002341.2 vs. TrEMBL
Match: tr|A0A0A0LTS0|A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 55/74 (74.32%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQV P                 KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVHP---PQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 71

[Close]

BLAST of MELO3C002341.2 vs. TrEMBL
Match: tr|A0A2N9FIV7|A0A2N9FIV7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-08
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE L+ K QQ Q                  KQ+QCNK K  KFKRS+SN+EEDGA
Sbjct: 1  MVSKVEEALKGKQQQPQ---------QPYHHQQLQKQMQCNKGKTSKFKRSTSNLEEDGA 60

Query: 61 SSAMLLLACI 71
          SSA+LLLACI
Sbjct: 61 SSAILLLACI 61

[Close]

BLAST of MELO3C002341.2 vs. TrEMBL
Match: tr|A0A1U7X607|A0A1U7X607_NICSY (uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC104234424 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 41/74 (55.41%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVS+VEE    + QQ +                  KQ+QCNK K  KFKRSSSNVEEDGA
Sbjct: 1  MVSRVEEATNIRQQQQE-----------VKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSA+LLLACIA AS
Sbjct: 61 SSAILLLACIACAS 63

[Close]

BLAST of MELO3C002341.2 vs. TrEMBL
Match: tr|A0A1S4AB82|A0A1S4AB82_TOBAC (uncharacterized protein LOC107795704 OS=Nicotiana tabacum OX=4097 GN=LOC107795704 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVS+VEE +  + QQ +                  KQ+QCNK K  KFKRSSSNVEEDGA
Sbjct: 1  MVSRVEEAMNIRQQQQE-----------VKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSA+LLLACIA  S
Sbjct: 61 SSAILLLACIACGS 63

[Close]

BLAST of MELO3C002341.2 vs. TrEMBL
Match: tr|A0A2G3C9W3|A0A2G3C9W3_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16716 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-07
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVQPXXXXXXXXXXXXXXXXXKQI-QCNKTKYPKFKRSSSNVEEDG 60
          MVS+VEE ++ + Q+V+                  KQ+ QCNK K  KFKRSSSNVEEDG
Sbjct: 1  MVSRVEEAMKIRQQEVK-------------NYQMQKQVMQCNKGKAKKFKRSSSNVEEDG 60

Query: 61 ASSAMLLLACIAFAS 75
          ASSA+LLLACIA A+
Sbjct: 61 ASSAILLLACIACAT 62

The following BLAST results are available for this feature:

BLAST of MELO3C002341.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64384.1	2.8e-17	74.32	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
XP_019248928.1	5.2e-08	55.41	PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata]	[more]
XP_009786288.1	2.0e-07	55.41	PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]	[more]
XP_016473869.1	2.6e-07	54.05	PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum]	[more]
PHT79732.1	5.7e-07	53.33	hypothetical protein T459_17784 [Capsicum annuum] >PHU15511.1 hypothetical prote...	[more]

BLAST of MELO3C002341.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50335.1	4.5e-06	65.71	unknown protein	[more]

BLAST of MELO3C002341.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C002341.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS0\|A0A0A0LTS0_CUCSA	1.8e-17	74.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1	[more]
tr\|A0A2N9FIV7\|A0A2N9FIV7_FAGSY	4.5e-08	57.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1	[more]
tr\|A0A1U7X607\|A0A1U7X607_NICSY	1.3e-07	55.41	uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]
tr\|A0A1S4AB82\|A0A1S4AB82_TOBAC	1.7e-07	54.05	uncharacterized protein LOC107795704 OS=Nicotiana tabacum OX=4097 GN=LOC10779570...	[more]
tr\|A0A2G3C9W3\|A0A2G3C9W3_CAPCH	3.8e-07	53.33	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16716 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002341.2.1	MELO3C002341.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002341.2	Csa1G050230	Cucumber (Chinese Long) v2	cumedB022
MELO3C002341.2	CSPI01G09290	Wild cucumber (PI 183967)	cpimedB023
MELO3C002341.2	Cucsa.391840	Cucumber (Gy14) v1	cgymedB636
MELO3C002341.2	CmaCh13G007860	Cucurbita maxima (Rimu)	cmamedB218
MELO3C002341.2	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C002341.2	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	cpemedB552
MELO3C002341.2	CsGy1G009320	Cucumber (Gy14) v2	cgybmedB020
MELO3C002341.2	Cla002596	Watermelon (97103) v1	medwmB145
MELO3C002341.2	ClCG03G003560	Watermelon (Charleston Gray)	medwcgB144
MELO3C002341.2	Cla97C03G054640	Watermelon (97103) v2	medwmbB145
MELO3C002341.2	Bhi08G001396	Wax gourd	medwgoB172
MELO3C002341.2	Carg06779	Silver-seed gourd	carmedB0504
MELO3C002341.2	Carg07583	Silver-seed gourd	carmedB0988
MELO3C002341.2	CsaV3_1G009400	Cucumber (Chinese Long) v3	cucmedB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002341.2	Cucumber (Chinese Long) v3	cucmedB017
MELO3C002341.2	Watermelon (97103) v2	medwmbB151
MELO3C002341.2	Cucumber (Gy14) v2	cgybmedB017
MELO3C002341.2	Cucumber (Gy14) v1	cgymedB261
MELO3C002341.2	Cucumber (Gy14) v1	cgymedB638
MELO3C002341.2	Cucurbita maxima (Rimu)	cmamedB053
MELO3C002341.2	Cucurbita maxima (Rimu)	cmamedB096
MELO3C002341.2	Cucurbita maxima (Rimu)	cmamedB424
MELO3C002341.2	Cucurbita moschata (Rifu)	cmomedB045
MELO3C002341.2	Cucurbita moschata (Rifu)	cmomedB089
MELO3C002341.2	Cucurbita moschata (Rifu)	cmomedB206
MELO3C002341.2	Cucurbita moschata (Rifu)	cmomedB408
MELO3C002341.2	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C002341.2	Cucurbita pepo (Zucchini)	cpemedB381
MELO3C002341.2	Cucurbita pepo (Zucchini)	cpemedB713
MELO3C002341.2	Wild cucumber (PI 183967)	cpimedB014
MELO3C002341.2	Wild cucumber (PI 183967)	cpimedB095
MELO3C002341.2	Cucumber (Chinese Long) v2	cumedB018
MELO3C002341.2	Cucumber (Chinese Long) v2	cumedB095
MELO3C002341.2	Melon (DHL92) v3.6.1	medmedB065
MELO3C002341.2	Melon (DHL92) v3.6.1	medmedB066
MELO3C002341.2	Bottle gourd (USVL1VR-Ls)	lsimedB414
MELO3C002341.2	Bottle gourd (USVL1VR-Ls)	lsimedB484
MELO3C002341.2	Watermelon (Charleston Gray)	medwcgB151
MELO3C002341.2	Watermelon (Charleston Gray)	medwcgB154
MELO3C002341.2	Watermelon (97103) v1	medwmB179
MELO3C002341.2	Silver-seed gourd	carmedB0372