CsaV3_1G009400 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G009400
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Nuclear speckle splicing regulatory protein like
Location	chr1 : 5828037 .. 5828758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAATTAATCCCAAGTGGGAGGGGCATTTTCGTCATCCTACATTACTATAAAAGAAGGTGCTTATGTAGGGATGTTCCCACAACACAAATCAAATTCGCATCTTTCCATCCTTTCCTTAAAAACATTTTTGCTTAGCTTCCTAATTCATTTTTTTTAAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAATTTTTAGCCACGGAGCCGTCATTCGAGATTTATGGAGGAGGGATTAGCTGTTGTTCTCTTGACGCCGGTCGTCGGAGGCCACTTCCGGTAGCTAATTATGAGTACATAAATATTAATGGTCGTCGTAGTTTTTCTCTGATTTAGAAGTGATTATTAGATCGATAAGATATATATATTCTTTATTTCTATTTTTATTTTCCCTTAATTCGTTTTTTCTTTTTCGCGTTATTAATTTTGTACTCTTTGAAAATTATTTCTTAGTATAAATATATTTTGTTTTCTGTTTAATATTTATTTTGTTGCATCTTTTATATATTAGAGATTAATATATTAAAATTTATT

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCAGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Protein sequence

MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS

Homology

[Close]

BLAST of CsaV3_1G009400 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]

BLAST of CsaV3_1G009400 vs. NCBI nr
Match: XP_019248928.1 (PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE ++ + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEAMKIRQQQ--------QEVKNHQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

[Close]

BLAST of CsaV3_1G009400 vs. NCBI nr
Match: XP_009786288.1 (PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris])

HSP 1 Score: 65.9 bits (159), Expect = 6.6e-08
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE    + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEATNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

[Close]

BLAST of CsaV3_1G009400 vs. NCBI nr
Match: KJB51172.1 (hypothetical protein B456_008G204900 [Gossypium raimondii] >PPD67149.1 hypothetical protein GOBAR_DD35975 [Gossypium barbadense])

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-08
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

[Close]

BLAST of CsaV3_1G009400 vs. NCBI nr
Match: XP_016473869.1 (PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum])

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-08
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE +  + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEAMNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA  S
Sbjct: 61 ILLLACIACGS 63

[Close]

BLAST of CsaV3_1G009400 vs. TAIR10
Match: AT5G50335.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.4e-06
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 37 CNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS 72
          CNK K  +FKRS+SN++ DGASSA+ LLACIA +S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSS 69

[Close]

BLAST of CsaV3_1G009400 vs. TrEMBL
Match: tr|A0A0A0LTS0|A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]

BLAST of CsaV3_1G009400 vs. TrEMBL
Match: tr|A0A2N9FIV7|A0A2N9FIV7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE L+ K QQ   P             KQ+QCNK K  KFKRS+SN+EEDGASSA
Sbjct: 1  MVSKVEEALKGKQQQPQQP------YHHQQLQKQMQCNKGKTSKFKRSTSNLEEDGASSA 60

Query: 61 MLLLACI 68
          +LLLACI
Sbjct: 61 ILLLACI 61

[Close]

BLAST of CsaV3_1G009400 vs. TrEMBL
Match: tr|A0A1U7X607|A0A1U7X607_NICSY (uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC104234424 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-08
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE    + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEATNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

[Close]

BLAST of CsaV3_1G009400 vs. TrEMBL
Match: tr|A0A0D2PYJ9|A0A0D2PYJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G204900 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

[Close]

BLAST of CsaV3_1G009400 vs. TrEMBL
Match: tr|A0A2P5PXX8|A0A2P5PXX8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35975 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64384.1	1.5e-28	100.00	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
XP_019248928.1	1.7e-08	59.15	PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata]	[more]
XP_009786288.1	6.6e-08	59.15	PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]	[more]
KJB51172.1	8.6e-08	59.15	hypothetical protein B456_008G204900 [Gossypium raimondii] >PPD67149.1 hypotheti...	[more]
XP_016473869.1	8.6e-08	57.75	PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum]	[more]

BLAST of CsaV3_1G009400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50335.1	3.4e-06	65.71	unknown protein	[more]

BLAST of CsaV3_1G009400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G009400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS0\|A0A0A0LTS0_CUCSA	1.0e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1	[more]
tr\|A0A2N9FIV7\|A0A2N9FIV7_FAGSY	2.0e-08	59.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1	[more]
tr\|A0A1U7X607\|A0A1U7X607_NICSY	4.4e-08	59.15	uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]
tr\|A0A0D2PYJ9\|A0A0D2PYJ9_GOSRA	5.7e-08	59.15	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G204900 PE=4 ...	[more]
tr\|A0A2P5PXX8\|A0A2P5PXX8_GOSBA	5.7e-08	59.15	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35975 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G009400.1	CsaV3_1G009400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 1..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G009400	CSPI01G09290	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G009400	Cucsa.391840	Cucumber (Gy14) v1	cgycucB592
CsaV3_1G009400	CmaCh13G007860	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G009400	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G009400	Cp4.1LG09g09740	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G009400	CsGy1G009320	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G009400	Carg06779	Silver-seed gourd	carcucB0529
CsaV3_1G009400	Carg07583	Silver-seed gourd	carcucB1046
CsaV3_1G009400	Cla002596	Watermelon (97103) v1	cucwmB013
CsaV3_1G009400	MELO3C002341	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G009400	ClCG03G003560	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G009400	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G009400	MELO3C002341.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G009400	Cla97C03G054640	Watermelon (97103) v2	cucwmbB030
CsaV3_1G009400	Bhi08G001396	Wax gourd	cucwgoB070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G009400	Cucumber (Chinese Long) v3	cuccucB003
CsaV3_1G009400	Cucumber (Chinese Long) v3	cuccucB010
CsaV3_1G009400	Silver-seed gourd	carcucB0397
CsaV3_1G009400	Cucumber (Gy14) v2	cgybcucB011
CsaV3_1G009400	Cucumber (Gy14) v1	cgycucB237
CsaV3_1G009400	Cucurbita maxima (Rimu)	cmacucB0078
CsaV3_1G009400	Cucurbita maxima (Rimu)	cmacucB0124
CsaV3_1G009400	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G009400	Cucurbita moschata (Rifu)	cmocucB0066
CsaV3_1G009400	Cucurbita moschata (Rifu)	cmocucB0110
CsaV3_1G009400	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G009400	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G009400	Cucurbita pepo (Zucchini)	cpecucB0439
CsaV3_1G009400	Cucurbita pepo (Zucchini)	cpecucB0808
CsaV3_1G009400	Wild cucumber (PI 183967)	cpicucB015
CsaV3_1G009400	Bottle gourd (USVL1VR-Ls)	cuclsiB077
CsaV3_1G009400	Melon (DHL92) v3.5.1	cucmeB051
CsaV3_1G009400	Melon (DHL92) v3.6.1	cucmedB048
CsaV3_1G009400	Watermelon (Charleston Gray)	cucwcgB080
CsaV3_1G009400	Watermelon (97103) v1	cucwmB098
CsaV3_1G009400	Watermelon (97103) v2	cucwmbB071
CsaV3_1G009400	Wax gourd	cucwgoB033