CsGy1G009320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr1 : 5798355 .. 5798570 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCGGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCGGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCGGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAA

Protein sequence

MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS

Homology

[Close]

BLAST of CsGy1G009320 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]

BLAST of CsGy1G009320 vs. NCBI nr
Match: XP_019248928.1 (PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata])

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-08
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE ++ + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEAMKIRQQQ--------QEVKNHQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

[Close]

BLAST of CsGy1G009320 vs. NCBI nr
Match: XP_009786288.1 (PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE    + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEATNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

[Close]

BLAST of CsGy1G009320 vs. NCBI nr
Match: KJB51172.1 (hypothetical protein B456_008G204900 [Gossypium raimondii] >PPD67149.1 hypothetical protein GOBAR_DD35975 [Gossypium barbadense])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

[Close]

BLAST of CsGy1G009320 vs. NCBI nr
Match: XP_016473869.1 (PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 41/71 (57.75%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE +  + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEAMNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA  S
Sbjct: 61 ILLLACIACGS 63

[Close]

BLAST of CsGy1G009320 vs. TAIR10
Match: AT5G50335.1 (unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.7e-06
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 37 CNKAKYPKFKRSSSNVEEDGASSAMLLLACIAFAS 72
          CNK K  +FKRS+SN++ DGASSA+ LLACIA +S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSS 69

[Close]

BLAST of CsGy1G009320 vs. TrEMBL
Match: tr|A0A0A0LTS0|A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          MLLLACIAFAS
Sbjct: 61 MLLLACIAFAS 71

[Close]

BLAST of CsGy1G009320 vs. TrEMBL
Match: tr|A0A2N9FIV7|A0A2N9FIV7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVSKVEE L+ K QQ   P             KQ+QCNK K  KFKRS+SN+EEDGASSA
Sbjct: 1  MVSKVEEALKGKQQQPQQP------YHHQQLQKQMQCNKGKTSKFKRSTSNLEEDGASSA 60

Query: 61 MLLLACI 68
          +LLLACI
Sbjct: 61 ILLLACI 61

[Close]

BLAST of CsGy1G009320 vs. TrEMBL
Match: tr|A0A0D2PYJ9|A0A0D2PYJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G204900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-08
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

[Close]

BLAST of CsGy1G009320 vs. TrEMBL
Match: tr|A0A2P5PXX8|A0A2P5PXX8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35975 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-08
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQ---IQCNKAKYPKFKRSSSNVEEDGA 60
          MVS+VEE +RR+ Q  +  +  +   + AA  KQ   IQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSRVEEAMRRQ-QNPNGKKEHLHQQSPAALQKQPSMIQCNKGKTSKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 69
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 70

[Close]

BLAST of CsGy1G009320 vs. TrEMBL
Match: tr|A0A1U7X607|A0A1U7X607_NICSY (uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC104234424 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.6e-08
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60
          MVS+VEE    + QQ          V      KQ+QCNK K  KFKRSSSNVEEDGASSA
Sbjct: 1  MVSRVEEATNIRQQQ--------QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFAS 72
          +LLLACIA AS
Sbjct: 61 ILLLACIACAS 63

The following BLAST results are available for this feature:

BLAST of CsGy1G009320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64384.1	3.3e-28	100.00	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
XP_019248928.1	3.8e-08	59.15	PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata]	[more]
XP_009786288.1	1.5e-07	59.15	PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]	[more]
KJB51172.1	1.5e-07	59.15	hypothetical protein B456_008G204900 [Gossypium raimondii] >PPD67149.1 hypotheti...	[more]
XP_016473869.1	1.9e-07	57.75	PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum]	[more]

BLAST of CsGy1G009320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50335.1	5.7e-06	65.71	unknown protein	[more]

BLAST of CsGy1G009320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G009320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS0\|A0A0A0LTS0_CUCSA	2.2e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1	[more]
tr\|A0A2N9FIV7\|A0A2N9FIV7_FAGSY	2.5e-08	59.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1	[more]
tr\|A0A0D2PYJ9\|A0A0D2PYJ9_GOSRA	9.6e-08	59.15	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G204900 PE=4 ...	[more]
tr\|A0A2P5PXX8\|A0A2P5PXX8_GOSBA	9.6e-08	59.15	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35975 PE=4 SV...	[more]
tr\|A0A1U7X607\|A0A1U7X607_NICSY	9.6e-08	59.15	uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009320.1	CsGy1G009320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 1..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009320	Cla002596	Watermelon (97103) v1	cgybwmB010
CsGy1G009320	Csa1G050230	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009320	MELO3C002341	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009320	ClCG03G003560	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009320	CSPI01G09290	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009320	CmaCh13G007860	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009320	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009320	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009320	MELO3C002341.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009320	CsaV3_1G009400	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009320	Cla97C03G054640	Watermelon (97103) v2	cgybwmbB032
CsGy1G009320	Bhi08G001396	Wax gourd	cgybwgoB064
CsGy1G009320	Carg07583	Silver-seed gourd	carcgybB0989
CsGy1G009320	Carg06779	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009320	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009320	Watermelon (97103) v2	cgybwmbB070
CsGy1G009320	Wax gourd	cgybwgoB027
CsGy1G009320	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009320	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009320	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009320	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G009320	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009320	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009320	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009320	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009320	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009320	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009320	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009320	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009320	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009320	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009320	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009320	Watermelon (97103) v1	cgybwmB087
CsGy1G009320	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009320	Silver-seed gourd	carcgybB0373