Carg07583 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07583
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear speckle splicing regulatory protein like
Location	Cucurbita_argyrosperma_scaffold_024 : 430127 .. 430351 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTAAAGTGGAAGAAACGCTGAGAATGAAGCACCAGCAAGTTCAGCCGCCGCAAGCGGCGGAGGCGGCGGCGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTTGCTCTAATGTCGAAGAAGACGGCGCCTCTTCCGCTATGCTTTTGCTTGCTTGCATTGCTTTTGCTCCCGATTTTAGCCCCGTCCTCGGCTGA

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACGCTGAGAATGAAGCACCAGCAAGTTCAGCCGCCGCAAGCGGCGGAGGCGGCGGCGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTTGCTCTAATGTCGAAGAAGACGGCGCCTCTTCCGCTATGCTTTTGCTTGCTTGCATTGCTTTTGCTCCCGATTTTAGCCCCGTCCTCGGCTGA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACGCTGAGAATGAAGCACCAGCAAGTTCAGCCGCCGCAAGCGGCGGAGGCGGCGGCGACGGCGAAGCAAATCCAGTGCAATAAAGCTAAGTATCCGAAGTTCAAGAGAAGTTGCTCTAATGTCGAAGAAGACGGCGCCTCTTCCGCTATGCTTTTGCTTGCTTGCATTGCTTTTGCTCCCGATTTTAGCCCCGTCCTCGGCTGA

Protein sequence

MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLLACIAFAPDFSPVLG

Homology

[Close]

BLAST of Carg07583 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQ----AAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSA 60
          MVSKVEETLR K+QQV PPQ    A  AAATAKQIQCNKAKYPKFKRS SNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 67
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

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BLAST of Carg07583 vs. NCBI nr
Match: XP_019248928.1 (PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE ++++ QQ    Q  +     KQ+QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEAMKIRQQQ----QEVKNHQVQKQMQCNKGKTIKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIAFA 67
          ACIA A
Sbjct: 61 ACIACA 62

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BLAST of Carg07583 vs. NCBI nr
Match: XP_016473869.1 (PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum])

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE + ++ QQ    Q  +     KQ+QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEAMNIRQQQ----QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIA 65
          ACIA
Sbjct: 61 ACIA 60

[Close]

BLAST of Carg07583 vs. NCBI nr
Match: XP_009786288.1 (PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris])

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE   ++ QQ    Q  +     KQ+QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEATNIRQQQ----QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIAFA 67
          ACIA A
Sbjct: 61 ACIACA 62

[Close]

BLAST of Carg07583 vs. NCBI nr
Match: PHT46371.1 (hypothetical protein CQW23_15529 [Capsicum baccatum])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE ++++ Q+V+  Q  +     + +QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEAMKIRQQEVKNYQMQK-----QLMQCNKGKAKKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIAFA 67
          ACIA A
Sbjct: 61 ACIACA 61

[Close]

BLAST of Carg07583 vs. TAIR10
Match: AT5G50335.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.5e-04
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  MVSKVEETLRMKH--QQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAML 60
          MV + EE ++ +   ++ +     +         CNK K  +FKRS SN++ DGASSA+ 
Sbjct: 1  MVCRAEEAMKQRGIIKRCKEDDRHQKKKMQSITNCNKEKSCRFKRSTSNLDNDGASSAIF 60

Query: 61 LLACIA 65
          LLACIA
Sbjct: 61 LLACIA 66

[Close]

BLAST of Carg07583 vs. TrEMBL
Match: tr|A0A0A0LTS0|A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQ----AAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSA 60
          MVSKVEETLR K+QQV PPQ    A  AAATAKQIQCNKAKYPKFKRS SNVEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 67
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

[Close]

BLAST of Carg07583 vs. TrEMBL
Match: tr|A0A2N9FIV7|A0A2N9FIV7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-10
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVSKVEE L+ K QQ Q P   +     KQ+QCNK K  KFKRS SN+EEDGASSA+LLL
Sbjct: 1  MVSKVEEALKGKQQQPQQPYHHQ--QLQKQMQCNKGKTSKFKRSTSNLEEDGASSAILLL 60

Query: 61 ACIAFAPDF 70
          ACI   P +
Sbjct: 61 ACIVCTPSY 67

[Close]

BLAST of Carg07583 vs. TrEMBL
Match: tr|A0A1S4AB82|A0A1S4AB82_TOBAC (uncharacterized protein LOC107795704 OS=Nicotiana tabacum OX=4097 GN=LOC107795704 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-08
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE + ++ QQ    Q  +     KQ+QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEAMNIRQQQ----QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIA 65
          ACIA
Sbjct: 61 ACIA 60

[Close]

BLAST of Carg07583 vs. TrEMBL
Match: tr|A0A1U7X607|A0A1U7X607_NICSY (uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC104234424 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE   ++ QQ    Q  +     KQ+QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEATNIRQQQ----QEVKNYQVQKQMQCNKGKTIKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIAFA 67
          ACIA A
Sbjct: 61 ACIACA 62

[Close]

BLAST of Carg07583 vs. TrEMBL
Match: tr|A0A2G3C9W3|A0A2G3C9W3_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16716 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60
          MVS+VEE ++++ Q+V+  Q  +     + +QCNK K  KFKRS SNVEEDGASSA+LLL
Sbjct: 1  MVSRVEEAMKIRQQEVKNYQMQK-----QVMQCNKGKAKKFKRSSSNVEEDGASSAILLL 60

Query: 61 ACIAFA 67
          ACIA A
Sbjct: 61 ACIACA 61

The following BLAST results are available for this feature:

BLAST of Carg07583 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64384.1	3.5e-20	85.71	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
XP_019248928.1	1.4e-08	60.61	PREDICTED: uncharacterized protein LOC109228224 [Nicotiana attenuata]	[more]
XP_016473869.1	4.0e-08	60.94	PREDICTED: uncharacterized protein LOC107795704 [Nicotiana tabacum]	[more]
XP_009786288.1	5.2e-08	60.61	PREDICTED: uncharacterized protein LOC104234424 [Nicotiana sylvestris]	[more]
PHT46371.1	1.5e-07	57.58	hypothetical protein CQW23_15529 [Capsicum baccatum]	[more]

BLAST of Carg07583 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50335.1	1.5e-04	39.39	unknown protein	[more]

BLAST of Carg07583 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07583 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTS0\|A0A0A0LTS0_CUCSA	2.3e-20	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1	[more]
tr\|A0A2N9FIV7\|A0A2N9FIV7_FAGSY	6.3e-10	60.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14917 PE=4 SV=1	[more]
tr\|A0A1S4AB82\|A0A1S4AB82_TOBAC	2.6e-08	60.94	uncharacterized protein LOC107795704 OS=Nicotiana tabacum OX=4097 GN=LOC10779570...	[more]
tr\|A0A1U7X607\|A0A1U7X607_NICSY	3.4e-08	60.61	uncharacterized protein LOC104234424 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]
tr\|A0A2G3C9W3\|A0A2G3C9W3_CAPCH	1.0e-07	57.58	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16716 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07583-RA	Carg07583-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 1..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07583	Cla002596	Watermelon (97103) v1	carwmB1003
Carg07583	Csa1G050230	Cucumber (Chinese Long) v2	carcuB1017
Carg07583	MELO3C002341	Melon (DHL92) v3.5.1	carmeB0978
Carg07583	ClCG03G003560	Watermelon (Charleston Gray)	carwcgB0980
Carg07583	CSPI01G09290	Wild cucumber (PI 183967)	carcpiB1041
Carg07583	Cucsa.391840	Cucumber (Gy14) v1	carcgyB1124
Carg07583	CmaCh13G007860	Cucurbita maxima (Rimu)	carcmaB1393
Carg07583	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	carlsiB918
Carg07583	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	carcpeB1401
Carg07583	Cp4.1LG09g09740	Cucurbita pepo (Zucchini)	carcpeB1396
Carg07583	CsGy1G009320	Cucumber (Gy14) v2	carcgybB0989
Carg07583	MELO3C002341.2	Melon (DHL92) v3.6.1	carmedB0988
Carg07583	CsaV3_1G009400	Cucumber (Chinese Long) v3	carcucB1046
Carg07583	Cla97C03G054640	Watermelon (97103) v2	carwmbB1060
Carg07583	Bhi08G001396	Wax gourd	carwgoB1183

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07583	Carg06779	Silver-seed gourd	carcarB481

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07583	Silver-seed gourd	carcarB395
Carg07583	Cucumber (Gy14) v1	carcgyB1122
Carg07583	Cucurbita maxima (Rimu)	carcmaB1391
Carg07583	Cucurbita maxima (Rimu)	carcmaB1392
Carg07583	Cucurbita maxima (Rimu)	carcmaB1395
Carg07583	Cucurbita moschata (Rifu)	carcmoB1350
Carg07583	Cucurbita moschata (Rifu)	carcmoB1346
Carg07583	Cucurbita moschata (Rifu)	carcmoB1348
Carg07583	Cucurbita moschata (Rifu)	carcmoB1349
Carg07583	Cucurbita pepo (Zucchini)	carcpeB1398
Carg07583	Cucurbita pepo (Zucchini)	carcpeB1402
Carg07583	Cucumber (Chinese Long) v3	carcucB1050
Carg07583	Watermelon (97103) v2	carwmbB1063
Carg07583	Wax gourd	carwgoB1178