MELO3C002341 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002341
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_94
Location	chr12 : 23585094 .. 23585688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGAAAAAGAAGAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGATTTTAGAGACGGAGCCGCCATCCGCGATATGGAGGAGGGATTAGCTGTTGTTCTCTCGACGCCGGTCGTCGAAGGCCACTTCCGGTAGCTAATTATGAGTACAGAATATTAATGGTCGCCTTAGTTTTTCTCTGATTTAGGAGTGATTTATTAGATTGCTAAGATATATATTCTTTGTTTTTATTTTGCCCCTAATTAGTTTTTCTTTTTCGCGTTATTAATTATGTACCTTTTTGAAAATTATTTCTCAATATAAATATATTTTCTTTTCTGTTTAATATTTATTTTGTTGCATTTTTTATATATCAGAGATTAATATATGAAAATTTATTGAGGATGGCTTTTA

mRNA sequence

AAAAAAAAAGAAAAAGAAGAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGATTTTAGAGACGGAGCCGCCATCCGCGATATGGAGGAGGGATTAGCTGTTGTTCTCTCGACGCCGGTCGTCGAAGGCCACTTCCGGTAGCTAATTATGAGTACAGAATATTAATGGTCGCCTTAGTTTTTCTCTGATTTAGGAGTGATTTATTAGATTGCTAAGATATATATTCTTTGTTTTTATTTTGCCCCTAATTAGTTTTTCTTTTTCGCGTTATTAATTATGTACCTTTTTGAAAATTATTTCTCAATATAAATATATTTTCTTTTCTGTTTAATATTTATTTTGTTGCATTTTTTATATATCAGAGATTAATATATGAAAATTTATTGAGGATGGCTTTTA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGGAGGAAGTACCAGCAAGTTCAGCCTCCGCAGACGGCGGTGTCAGCGGTGGCAGCGGCGACGACGACGGCGACGACGAAGCAAATCCAATGCAATAAAACCAAATATCCGAAATTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCCTGA

Protein sequence

MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGASSAMLLLACIAFAS*

Homology

[Close]

BLAST of MELO3C002341 vs. TrEMBL
Match: A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQV PPQTAV+AVAAA   AT KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAA---ATAKQIQCNKAKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 71

[Close]

BLAST of MELO3C002341 vs. TrEMBL
Match: A0A061FZA4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 43/71 (60.56%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R   Q Q  Q +             KQIQCNK K PKFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKR---QQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 72
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 68

[Close]

BLAST of MELO3C002341 vs. TrEMBL
Match: I1K083_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R  +Q+QP        A        KQIQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKRN-KQMQPQ-------AQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIAFA 74
          SSA+L LACIA+A
Sbjct: 61 SSAILFLACIAYA 65

[Close]

BLAST of MELO3C002341 vs. TrEMBL
Match: A0A0B2RRF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R  +Q+QP        A        KQIQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKRN-KQMQPQ-------AQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIAFA 74
          SSA+L LACIA+A
Sbjct: 61 SSAILFLACIAYA 65

[Close]

BLAST of MELO3C002341 vs. TrEMBL
Match: A0A0S3R5Q4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G393800 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-10
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R  Q  Q  Q     +         KQIQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKRNKQMQQQGQNQQQQLQ--------KQIQCNKGKAGKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIAFA 74
          SSA+L LACIA A
Sbjct: 61 SSAILFLACIACA 65

[Close]

BLAST of MELO3C002341 vs. TAIR10
Match: AT5G50335.1 (AT5G50335.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-06
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 40 CNKTKYPKFKRSSSNVEEDGASSAMLLLACIAFAS 75
          CNK K  +FKRS+SN++ DGASSA+ LLACIA +S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACSS 69

[Close]

BLAST of MELO3C002341 vs. NCBI nr
Match: gi|659067431|ref|XP_008439407.1| (PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.8e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 74

[Close]

BLAST of MELO3C002341 vs. NCBI nr
Match: gi|700209288|gb|KGN64384.1| (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEETLRRKYQQV PPQTAV+AVAAA   AT KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAA---ATAKQIQCNKAKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFAS 75
          SSAMLLLACIAFAS
Sbjct: 61 SSAMLLLACIAFAS 71

[Close]

BLAST of MELO3C002341 vs. NCBI nr
Match: gi|590669889|ref|XP_007037902.1| (Uncharacterized protein TCM_014581 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 43/71 (60.56%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R   Q Q  Q +             KQIQCNK K PKFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKR---QQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIA 72
          SSA+LLLACIA
Sbjct: 61 SSAILLLACIA 68

[Close]

BLAST of MELO3C002341 vs. NCBI nr
Match: gi|734407586|gb|KHN34392.1| (hypothetical protein glysoja_016720 [Glycine soja])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R  +Q+QP        A        KQIQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKRN-KQMQPQ-------AQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIAFA 74
          SSA+L LACIA+A
Sbjct: 61 SSAILFLACIAYA 65

[Close]

BLAST of MELO3C002341 vs. NCBI nr
Match: gi|1012354132|gb|KYP65319.1| (hypothetical protein KK1_011552 [Cajanus cajan])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60
          MVSKVEE ++R  QQ    Q     +         KQIQCNK K  KFKRSSSN+EEDGA
Sbjct: 1  MVSKVEEAMKRNKQQQAQTQNQQQQLQ--------KQIQCNKGKAGKFKRSSSNLEEDGA 60

Query: 61 SSAMLLLACIAFA 74
          SSA+L LACIA A
Sbjct: 61 SSAILFLACIACA 65

The following BLAST results are available for this feature:

BLAST of MELO3C002341 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTS0_CUCSA	1.5e-26	90.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1	[more]
A0A061FZA4_THECC	1.2e-10	60.56	Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1	[more]
I1K083_SOYBN	2.0e-10	58.90	Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1	[more]
A0A0B2RRF8_GLYSO	2.0e-10	58.90	Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1	[more]
A0A0S3R5Q4_PHAAN	4.5e-10	57.53	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G393800 PE=...	[more]

BLAST of MELO3C002341 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50335.1	1.2e-06	65.71	unknown protein	[more]

BLAST of MELO3C002341 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067431\|ref\|XP_008439407.1\|	7.8e-32	100.00	PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo]	[more]
gi\|700209288\|gb\|KGN64384.1\|	2.2e-26	90.54	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
gi\|590669889\|ref\|XP_007037902.1\|	1.7e-10	60.56	Uncharacterized protein TCM_014581 [Theobroma cacao]	[more]
gi\|734407586\|gb\|KHN34392.1\|	2.9e-10	58.90	hypothetical protein glysoja_016720 [Glycine soja]	[more]
gi\|1012354132\|gb\|KYP65319.1\|	6.4e-10	57.53	hypothetical protein KK1_011552 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47812	melon EST collection version 4.0	transcribed_cluster
MU57942	melon EST collection version 4.0	transcribed_cluster
MU57981	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002341T1	MELO3C002341T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47812	MU47812	transcribed_cluster
MU57942	MU57942	transcribed_cluster
MU57981	MU57981	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 2..71 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002341	Csa1G050230	Cucumber (Chinese Long) v2	cumeB027
MELO3C002341	Cla002596	Watermelon (97103) v1	mewmB149
MELO3C002341	ClCG03G003560	Watermelon (Charleston Gray)	mewcgB152
MELO3C002341	Cla97C03G054640	Watermelon (97103) v2	mewmbB156
MELO3C002341	Bhi08G001396	Wax gourd	mewgoB170
MELO3C002341	CSPI01G09290	Wild cucumber (PI 183967)	cpimeB024
MELO3C002341	Cucsa.391840	Cucumber (Gy14) v1	cgymeB642
MELO3C002341	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002341	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	cpemeB470
MELO3C002341	CsGy1G009320	Cucumber (Gy14) v2	cgybmeB022
MELO3C002341	Carg06779	Silver-seed gourd	carmeB0499
MELO3C002341	Carg07583	Silver-seed gourd	carmeB0978
MELO3C002341	CsaV3_1G009400	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002341	Silver-seed gourd	carmeB0366
MELO3C002341	Cucumber (Chinese Long) v3	cucmeB019
MELO3C002341	Watermelon (97103) v2	mewmbB165
MELO3C002341	Melon (DHL92) v3.5.1	memeB067
MELO3C002341	Melon (DHL92) v3.5.1	memeB068
MELO3C002341	Cucumber (Gy14) v1	cgymeB262
MELO3C002341	Cucurbita maxima (Rimu)	cmameB051
MELO3C002341	Cucurbita maxima (Rimu)	cmameB088
MELO3C002341	Cucurbita maxima (Rimu)	cmameB197
MELO3C002341	Cucurbita maxima (Rimu)	cmameB365
MELO3C002341	Cucurbita moschata (Rifu)	cmomeB041
MELO3C002341	Cucurbita moschata (Rifu)	cmomeB083
MELO3C002341	Cucurbita moschata (Rifu)	cmomeB183
MELO3C002341	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002341	Wild cucumber (PI 183967)	cpimeB015
MELO3C002341	Cucumber (Chinese Long) v2	cumeB022
MELO3C002341	Watermelon (Charleston Gray)	mewcgB160
MELO3C002341	Watermelon (Charleston Gray)	mewcgB161
MELO3C002341	Watermelon (97103) v1	mewmB182
MELO3C002341	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002341	Cucurbita pepo (Zucchini)	cpemeB324
MELO3C002341	Cucurbita pepo (Zucchini)	cpemeB603
MELO3C002341	Bottle gourd (USVL1VR-Ls)	lsimeB392
MELO3C002341	Bottle gourd (USVL1VR-Ls)	lsimeB465
MELO3C002341	Cucumber (Gy14) v2	cgybmeB020