Cla002596 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002596
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 3684987 .. 3685202 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGCGAAACAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGCGAAACAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGCGAAACAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

Protein sequence

MVSKVEETLRRKHQQVQPPQAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACIAFAPNFSSIAD

Homology

[Close]

BLAST of Cla002596 vs. TrEMBL
Match: A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-22
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAATAKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AAATAKQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

[Close]

BLAST of Cla002596 vs. TrEMBL
Match: I1K083_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPP---QAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

[Close]

BLAST of Cla002596 vs. TrEMBL
Match: A0A0B2RRF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPP---QAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

[Close]

BLAST of Cla002596 vs. TrEMBL
Match: A0A151TE32_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MVSKVEETLRR-KHQQVQPP-QAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE ++R K QQ Q   Q     KQIQCNK K  KFKRSSS++EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQQQAQTQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 61 CIAFAPNFS 68
          CIA AP+++
Sbjct: 61 CIACAPSYA 69

[Close]

BLAST of Cla002596 vs. TrEMBL
Match: G7JML6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g103970 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-12
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPPQAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE +++  QQ          KQIQCNK K  KFKRSSS+VEEDG SSA+L LACI
Sbjct: 1  MVSKVEEAMKKNKQQQSQQHNQQQQKQIQCNKGKAGKFKRSSSNVEEDGLSSAILFLACI 60

Query: 61 AFAPNF 67
          A AP++
Sbjct: 61 ACAPSY 66

[Close]

BLAST of Cla002596 vs. NCBI nr
Match: gi|700209288|gb|KGN64384.1| (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAATAKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AAATAKQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

[Close]

BLAST of Cla002596 vs. NCBI nr
Match: gi|659067431|ref|XP_008439407.1| (PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-21
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPPQAA----------ATAKQIQCNKAKYPKFKRSSSDVEEDGA 60
          MVSKVEETLRRK+QQVQPPQ A          AT KQIQCNK KYPKFKRSSS+VEEDGA
Sbjct: 1  MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60

Query: 61 SSAMLLLACIAFA 64
          SSAMLLLACIAFA
Sbjct: 61 SSAMLLLACIAFA 73

[Close]

BLAST of Cla002596 vs. NCBI nr
Match: gi|734407586|gb|KHN34392.1| (hypothetical protein glysoja_016720 [Glycine soja])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPP---QAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

[Close]

BLAST of Cla002596 vs. NCBI nr
Match: gi|1012354132|gb|KYP65319.1| (hypothetical protein KK1_011552 [Cajanus cajan])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MVSKVEETLRR-KHQQVQPP-QAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE ++R K QQ Q   Q     KQIQCNK K  KFKRSSS++EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQQQAQTQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 61 CIAFAPNFS 68
          CIA AP+++
Sbjct: 61 CIACAPSYA 69

[Close]

BLAST of Cla002596 vs. NCBI nr
Match: gi|357477187|ref|XP_003608879.1| (hypothetical protein MTR_4g103970 [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-12
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 1  MVSKVEETLRRKHQQVQPPQAAATAKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE +++  QQ          KQIQCNK K  KFKRSSS+VEEDG SSA+L LACI
Sbjct: 1  MVSKVEEAMKKNKQQQSQQHNQQQQKQIQCNKGKAGKFKRSSSNVEEDGLSSAILFLACI 60

Query: 61 AFAPNF 67
          A AP++
Sbjct: 61 ACAPSY 66

The following BLAST results are available for this feature:

BLAST of Cla002596 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTS0_CUCSA	2.2e-22	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1	[more]
I1K083_SOYBN	1.2e-12	61.43	Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1	[more]
A0A0B2RRF8_GLYSO	1.2e-12	61.43	Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1	[more]
A0A151TE32_CAJCA	3.5e-12	63.77	Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1	[more]
G7JML6_MEDTR	4.5e-12	60.61	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g103970 PE=4 SV=1	[more]

BLAST of Cla002596 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209288\|gb\|KGN64384.1\|	3.1e-22	85.71	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
gi\|659067431\|ref\|XP_008439407.1\|	4.5e-21	79.45	PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo]	[more]
gi\|734407586\|gb\|KHN34392.1\|	1.7e-12	61.43	hypothetical protein glysoja_016720 [Glycine soja]	[more]
gi\|1012354132\|gb\|KYP65319.1\|	5.0e-12	63.77	hypothetical protein KK1_011552 [Cajanus cajan]	[more]
gi\|357477187\|ref\|XP_003608879.1\|	6.5e-12	60.61	hypothetical protein MTR_4g103970 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002596	Cla002596.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 2..68 score: 4.2
None	No IPR available	PANTHER	PTHR38398:SF1	SUBFAMILY NOT NAMED	coord: 2..68 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002596	Cla97C03G054640	Watermelon (97103) v2	wmwmbB124
Cla002596	Csa1G050230	Cucumber (Chinese Long) v2	cuwmB008
Cla002596	MELO3C002341	Melon (DHL92) v3.5.1	mewmB149
Cla002596	ClCG03G003560	Watermelon (Charleston Gray)	wcgwmB223
Cla002596	CSPI01G09290	Wild cucumber (PI 183967)	cpiwmB010
Cla002596	Cucsa.391840	Cucumber (Gy14) v1	cgywmB704
Cla002596	Lsi02G004780	Bottle gourd (USVL1VR-Ls)	lsiwmB184
Cla002596	Cp4.1LG20g03180	Cucurbita pepo (Zucchini)	cpewmB509
Cla002596	Cp4.1LG09g09740	Cucurbita pepo (Zucchini)	cpewmB025
Cla002596	CsGy1G009320	Cucumber (Gy14) v2	cgybwmB010
Cla002596	MELO3C002341.2	Melon (DHL92) v3.6.1	medwmB145
Cla002596	Carg06779	Silver-seed gourd	carwmB0489
Cla002596	Carg07583	Silver-seed gourd	carwmB1003
Cla002596	CsaV3_1G009400	Cucumber (Chinese Long) v3	cucwmB013
Cla002596	Bhi08G001396	Wax gourd	wgowmB487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002596	Bottle gourd (USVL1VR-Ls)	lsiwmB394
Cla002596	Cucumber (Gy14) v2	cgybwmB028
Cla002596	Melon (DHL92) v3.6.1	medwmB259
Cla002596	Silver-seed gourd	carwmB0354
Cla002596	Cucumber (Chinese Long) v3	cucwmB032
Cla002596	Watermelon (97103) v2	wmwmbB137
Cla002596	Wax gourd	wgowmB476
Cla002596	Watermelon (97103) v1	wmwmB097
Cla002596	Cucumber (Gy14) v1	cgywmB278
Cla002596	Cucurbita maxima (Rimu)	cmawmB053
Cla002596	Cucurbita maxima (Rimu)	cmawmB103
Cla002596	Cucurbita maxima (Rimu)	cmawmB187
Cla002596	Cucurbita maxima (Rimu)	cmawmB368
Cla002596	Cucurbita moschata (Rifu)	cmowmB045
Cla002596	Cucurbita moschata (Rifu)	cmowmB093
Cla002596	Cucurbita moschata (Rifu)	cmowmB175
Cla002596	Cucurbita moschata (Rifu)	cmowmB360
Cla002596	Melon (DHL92) v3.5.1	mewmB269
Cla002596	Cucumber (Chinese Long) v2	cuwmB028
Cla002596	Watermelon (Charleston Gray)	wcgwmB322
Cla002596	Cucurbita pepo (Zucchini)	cpewmB352
Cla002596	Cucurbita pepo (Zucchini)	cpewmB646