CU097641 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097641
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5793361 .. 5793942 (-)
Sequence length	598

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGACAACACAAATCAAATTCGCATCTTTCCATCCTTTCCTTAAAAACATCTTTGCTTAGCTTCCTAATTCATTTTTTTTTAAAAAAAATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGTACCAGCAAGTTCATCCGCCGCAGACGGCGGTGGCAGCAGTGGCAGCGGCGGCAACGGCAAAGCAAATCCAATGCAATAAAGCCAAATATCCCAAGTTCAAGAGAAGTAGCTCCAATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCTCTTAATTTTTAGCCACGGAGCCGTCATTCGAGATTTATGGAGGAGGGATTAGCTGTTGTTCTCTTGACGCCGGTCGTCGGAGGCCACTTCCGGTAGCTAATTATGAGTACATAAATATTAATGGTCGTCGTAGTTTTTCTCTGATTTAGAAGTGATTATTAGATCGATAAGATATATATATTCTTTATTTCTATTTTTATTTTCCCTTAATTCGTTTTTTCTTTTTCGCGTTATTAATTTTGTACTCTTTGAAAATTATTTCTTAGTATAAATATATTTTGTTTTCTAGTCCT

Library


Library category	ESTs
fruit (8DPP) library	18
gynoecious flower library	1

Homology

[Close]

BLAST of CU097641 vs. TrEMBL
Match: A0A0A0LTS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.4e-23
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEETLRRKYQQVHPPQ            KQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1   MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 155 MLLLACIAFAS 214
           MLLLACIAFAS
Sbjct: 61  MLLLACIAFAS 71

Query: 215  274
           
Sbjct: 121  71

Query: 275  308
           
Sbjct: 181  71

[Close]

BLAST of CU097641 vs. TrEMBL
Match: A0A061FZA4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R+ Q                  KQIQCNK K PKFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRQQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIA 214
           +LLLACIA
Sbjct: 61  ILLLACIA 68

Query: 215  274
           
Sbjct: 121  68

Query: 275  299
           
Sbjct: 181  68

[Close]

BLAST of CU097641 vs. TrEMBL
Match: A0A151TE32_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-10
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R  QQ    Q            KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRNKQQQAQTQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIAFA 214
           +L LACIA A
Sbjct: 61  ILFLACIACA 65

Query: 215  274
           
Sbjct: 121  65

Query: 275  305
           
Sbjct: 181  65

[Close]

BLAST of CU097641 vs. TrEMBL
Match: A0A0B2RRF8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-10
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R  Q     Q            KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRNKQMQPQAQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIAFA 214
           +L LACIA+A
Sbjct: 61  ILFLACIAYA 65

Query: 215  274
           
Sbjct: 121  65

Query: 275  305
           
Sbjct: 181  65

[Close]

BLAST of CU097641 vs. TrEMBL
Match: I1K083_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-10
Identity = 41/70 (58.57%), Postives = 46/70 (65.71%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R  Q     Q            KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRNKQMQPQAQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIAFA 214
           +L LACIA+A
Sbjct: 61  ILFLACIAYA 65

Query: 215  274
           
Sbjct: 121  65

Query: 275  305
           
Sbjct: 181  65

[Close]

BLAST of CU097641 vs. NCBI nr
Match: gi|700209288|gb|KGN64384.1| (hypothetical protein Csa_1G050230 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-22
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEETLRRKYQQVHPPQ            KQIQCNKAKYPKFKRSSSNVEEDGASSA
Sbjct: 1   MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 155 MLLLACIAFAS 214
           MLLLACIAFAS
Sbjct: 61  MLLLACIAFAS 71

Query: 215  274
           
Sbjct: 121  71

Query: 275  308
           
Sbjct: 181  71

[Close]

BLAST of CU097641 vs. NCBI nr
Match: gi|659067431|ref|XP_008439407.1| (PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 5.3e-19
Identity = 57/74 (77.03%), Postives = 57/74 (77.03%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXX---KQIQCNKAKYPKFKRSSSNVEEDGA 154
           MVSKVEETLRRKYQQV PPQ               KQIQCNK KYPKFKRSSSNVEEDGA
Sbjct: 1   MVSKVEETLRRKYQQVQPPQTAVSAVAAATTTATTKQIQCNKTKYPKFKRSSSNVEEDGA 60

Query: 155 SSAMLLLACIAFAS 214
           SSAMLLLACIAFAS
Sbjct: 61  SSAMLLLACIAFAS 74

Query: 215  274
           
Sbjct: 121  74

Query: 275  308
           
Sbjct: 181  74

[Close]

BLAST of CU097641 vs. NCBI nr
Match: gi|590669889|ref|XP_007037902.1| (Uncharacterized protein TCM_014581 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R+ Q                  KQIQCNK K PKFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRQQQSQQHSHKGRDHCHQQQLQKQIQCNKGKTPKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIA 214
           +LLLACIA
Sbjct: 61  ILLLACIA 68

Query: 215  274
           
Sbjct: 121  68

Query: 275  299
           
Sbjct: 181  68

[Close]

BLAST of CU097641 vs. NCBI nr
Match: gi|645268204|ref|XP_008239421.1| (PREDICTED: uncharacterized protein LOC103338021 [Prunus mume])

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R+ Q+    Q            KQIQCNK+K  KFKRS+SNVEEDGAS+A
Sbjct: 1   MVSKVEEAMKRRQQEQEQKQQYHHQQQQ----KQIQCNKSKVCKFKRSTSNVEEDGASTA 60

Query: 155 MLLLACIAFA 214
           +LLLACI  A
Sbjct: 61  ILLLACIVCA 66

Query: 215  274
           
Sbjct: 121  66

Query: 275  305
           
Sbjct: 181  66

[Close]

BLAST of CU097641 vs. NCBI nr
Match: gi|1012354132|gb|KYP65319.1| (hypothetical protein KK1_011552 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 2


Query: 95  MVSKVEETLRRKYQQVHPPQXXXXXXXXXXXXKQIQCNKAKYPKFKRSSSNVEEDGASSA 154
           MVSKVEE ++R  QQ    Q            KQIQCNK K  KFKRSSSN+EEDGASSA
Sbjct: 1   MVSKVEEAMKRNKQQQAQTQNQQQQLQ-----KQIQCNKGKAGKFKRSSSNLEEDGASSA 60

Query: 155 MLLLACIAFA 214
           +L LACIA A
Sbjct: 61  ILFLACIACA 65

Query: 215  274
           
Sbjct: 121  65

Query: 275  305
           
Sbjct: 181  65

The following BLAST results are available for this feature:

BLAST of CU097641 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTS0_CUCSA	9.4e-23	83.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050230 PE=4 SV=1	[more]
A0A061FZA4_THECC	1.7e-11	60.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_014581 PE=4 SV=1	[more]
A0A151TE32_CAJCA	9.1e-10	60.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_011552 PE=4 SV=1	[more]
A0A0B2RRF8_GLYSO	9.1e-10	58.57	Uncharacterized protein OS=Glycine soja GN=glysoja_016720 PE=4 SV=1	[more]
I1K083_SOYBN	9.1e-10	58.57	Uncharacterized protein OS=Glycine max GN=GLYMA_05G0454002 PE=4 SV=1	[more]

BLAST of CU097641 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209288\|gb\|KGN64384.1\|	5.1e-22	83.10	hypothetical protein Csa_1G050230 [Cucumis sativus]	[more]
gi\|659067431\|ref\|XP_008439407.1\|	5.3e-19	77.03	PREDICTED: uncharacterized protein LOC103484223 [Cucumis melo]	[more]
gi\|590669889\|ref\|XP_007037902.1\|	6.9e-11	60.29	Uncharacterized protein TCM_014581 [Theobroma cacao]	[more]
gi\|645268204\|ref\|XP_008239421.1\|	5.0e-09	57.14	PREDICTED: uncharacterized protein LOC103338021 [Prunus mume]	[more]
gi\|1012354132\|gb\|KYP65319.1\|	5.0e-09	60.00	hypothetical protein KK1_011552 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G050230	Csa1G050230	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K5DS6	FKNP3UI02K5DS6	EST
FKNP3UI02K6ZIK	FKNP3UI02K6ZIK	EST
FKNP3UI02K8Q48	FKNP3UI02K8Q48	EST
FKNP3UI02KGJ55	FKNP3UI02KGJ55	EST
FKNP3UI02KPQET	FKNP3UI02KPQET	EST
FKNP3UI02M0ZK3	FKNP3UI02M0ZK3	EST
FKNP3UI02M4IRK	FKNP3UI02M4IRK	EST
FKNP3UI02M86PZ	FKNP3UI02M86PZ	EST
FKNP3UI02MSZII	FKNP3UI02MSZII	EST
FKNP3UI02N0JXB	FKNP3UI02N0JXB	EST
FKNP3UI02NO17P	FKNP3UI02NO17P	EST
FKNP3UI02NW850	FKNP3UI02NW850	EST
FKNP3UI02NX0KS	FKNP3UI02NX0KS	EST
FKNP3UI02O2SEP	FKNP3UI02O2SEP	EST
FKNP3UI02O7B6D	FKNP3UI02O7B6D	EST
FKNP3UI02OAHA2	FKNP3UI02OAHA2	EST
FKNP3UI02ODKB0	FKNP3UI02ODKB0	EST
FKNP3UI02ODN17	FKNP3UI02ODN17	EST
G0154894	G0154894	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38398	FAMILY NOT NAMED	coord: 2..68 score: 1.6