Csa1G043260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G043260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCoiled-coil domain-containing protein 12; contains IPR013169 (mRNA splicing factor, Cwf18)
LocationChr1 : 4828196 .. 4831417 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGGTATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCTGTTTTAACTATTTCTTTCTCATTCCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGCTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAAAGTTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTTCGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACGTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGAATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCTTCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTCTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTAAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

mRNA sequence

ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Coding sequence (CDS)

ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Protein sequence

MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE*
Homology
[Close]
BLAST of Csa1G043260 vs. Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 49  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 108
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 109 ELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLDKL 168
           +L++ ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 169 ERRTQKALFKLMEEQEKQKQ 183
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

[Close]
BLAST of Csa1G043260 vs. Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1 

Query: 49  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN--MKFRNYVPH 108
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 109 DKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLD 168
           D++L+  ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 169 KLERRTQKALFKLMEEQEKQKQ 183
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

[Close]
BLAST of Csa1G043260 vs. Swiss-Prot
Match: CWF18_SCHPO (Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf18 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 39/137 (28.47%), Postives = 65/137 (47.45%), Query Frame = 1 

Query: 48  SVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNM-KFRNYVPH 107
           S+++VA +RK+RL  LR  ++L N                T DS E   N+ + RNY P 
Sbjct: 3   SLDEVAESRKQRLAELRKIKQLENK---------------TRDSQEVQKNVIEHRNYDPE 62

Query: 108 DKELQEGKLAPPVLPKFEDPVTSEPPQ-------------LKEDPFVNIAPKKPNWDLRR 167
            +  + G + PP + +  + ++ E  +             ++E   V + PKKP WDL R
Sbjct: 63  VQAPKMGFVEPPNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLER 122

Query: 168 DVQKKLDKLERRTQKAL 171
           D+++++  LE + Q A+
Sbjct: 123 DLKERMRSLETQNQNAI 124

[Close]
BLAST of Csa1G043260 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-105
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

Query: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 181 KQAAEGDNDENGAE 195
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]
BLAST of Csa1G043260 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.7e-54
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]
BLAST of Csa1G043260 vs. TrEMBL
Match: W9QTU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA++KLMEEQEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

[Close]
BLAST of Csa1G043260 vs. TrEMBL
Match: A0A0D2UWP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.0e-53
Identity = 108/149 (72.48%), Postives = 127/149 (85.23%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV + PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAAPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]
BLAST of Csa1G043260 vs. TrEMBL
Match: W9REY7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.5e-52
Identity = 106/150 (70.67%), Postives = 122/150 (81.33%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP    +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSGKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA++KLME QEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEAQEKQKELAEDAPD 150

[Close]
BLAST of Csa1G043260 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-49
Identity = 101/150 (67.33%), Postives = 114/150 (76.00%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVP  KELQ+GKLAPP LPKFEDP+ + PP +  KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

[Close]
BLAST of Csa1G043260 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.1e-105
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

Query: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 181 KQAAEGDNDENGAE 195
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]
BLAST of Csa1G043260 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 8.2e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 195
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]
BLAST of Csa1G043260 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 6.7e-75
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 195
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]
BLAST of Csa1G043260 vs. NCBI nr
Match: gi|728847547|gb|KHG26990.1| (Coiled-coil domain-containing 12 [Gossypium arboreum])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1 

Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]
BLAST of Csa1G043260 vs. NCBI nr
Match: gi|719963148|ref|XP_010248821.1| (PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 117/160 (73.12%), Postives = 133/160 (83.12%), Query Frame = 1 

Query: 40  KAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETN---- 99
           +AM TEEDS+EQ AAAR+ERLKALRAAQ+LLN  DE ++  EDK     ED+DETN    
Sbjct: 6   EAMTTEEDSIEQAAAARRERLKALRAAQDLLNTPDEDSTQKEDKPE--EEDADETNENKT 65

Query: 100 LNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRR 159
           LNMKFRNY+PHDK+LQEGKLAPPVLPKFEDPV +EPP  Q  EDPFVNIAPKKPNWDLRR
Sbjct: 66  LNMKFRNYLPHDKQLQEGKLAPPVLPKFEDPVATEPPPSQKTEDPFVNIAPKKPNWDLRR 125

Query: 160 DVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGA 194
           DVQK+L+KLERRTQKA+F+LMEE ++QKQ AE    ENGA
Sbjct: 126 DVQKRLEKLERRTQKAIFQLMEE-DRQKQEAE----ENGA 158

The following BLAST results are available for this feature:
BLAST of Csa1G043260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCD12_HUMAN1.3e-1735.71Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1[more]
CCD12_MOUSE1.1e-1636.62Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2[more]
CWF18_SCHPO3.5e-0728.47Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of Csa1G043260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR08_CUCSA1.5e-105100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1[more]
A0A0B0PPQ1_GOSAR7.7e-5473.15Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1[more]
W9QTU0_9ROSA1.3e-5371.33Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1[more]
A0A0D2UWP4_GOSRA5.0e-5372.48Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1[more]
W9REY7_9ROSA2.5e-5270.67Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1[more]
BLAST of Csa1G043260 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05070.12.3e-4967.33 mRNA splicing factor, Cwf18 (InterPro:IPR013169)[more]
BLAST of Csa1G043260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209127|gb|KGN64223.1|2.1e-105100.00hypothetical protein Csa_1G043260 [Cucumis sativus][more]
gi|449439527|ref|XP_004137537.1|8.2e-81100.00PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus][more]
gi|659067001|ref|XP_008437152.1|6.7e-7593.46PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo][more]
gi|728847547|gb|KHG26990.1|1.1e-5373.15Coiled-coil domain-containing 12 [Gossypium arboreum][more]
gi|719963148|ref|XP_010248821.1|1.1e-5373.13PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013169mRNA_splic_Cwf18
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU122172cucumber EST collection version 3.0transcribed_cluster
CU128966cucumber EST collection version 3.0transcribed_cluster
CU130240cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G043260.1Csa1G043260.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU122172CU122172transcribed_cluster
CU130240CU130240transcribed_cluster
CU128966CU128966transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013169mRNA splicing factor, Cwf18PFAMPF08315cwf18coord: 49..176
score: 4.5
NoneNo IPR availableunknownCoilCoilcoord: 159..194
score: -coord: 52..72
scor
NoneNo IPR availablePANTHERPTHR31551FAMILY NOT NAMEDcoord: 26..194
score: 8.3
NoneNo IPR availablePANTHERPTHR31551:SF1COILED-COIL DOMAIN-CONTAINING PROTEIN 12coord: 26..194
score: 8.3