CSPI01G07650 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G07650
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Coiled-coil domain-containing 12
Location	Chr1 : 4857158 .. 4860204 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTAACGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGATATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACATAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGTTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAATAAGATGTTTACTTCTTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTGGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACTTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGGATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAACTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCATCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTTTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTTAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCCTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGACTATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGACAATGGCGTTTCTGGCTTGTAGGGTCAATTTTTCTGTGAGCTTTCTGATCATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAATTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACAC

mRNA sequence

ATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Coding sequence (CDS)

ATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Homology

[Close]

BLAST of CSPI01G07650 vs. Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 50/140 (35.71%), Postives = 84/140 (60.00%), Query Frame = 1


Query: 8   VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 67
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 68  ELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLDKL 127
           +L++ ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 128 ERRTQKALFKLMEEQEKQKQ 142
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of CSPI01G07650 vs. Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 8.3e-12
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 8   VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN--MKFRNYVPH 67
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 68  DKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLD 127
           D++L+  ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 128 KLERRTQKALFKLMEEQEKQKQ 142
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of CSPI01G07650 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.8e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of CSPI01G07650 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDN 148
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of CSPI01G07650 vs. TrEMBL
Match: W9QTU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.0e-48
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDND 149
           DKLERRTQKA++KLMEEQEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

[Close]

BLAST of CSPI01G07650 vs. TrEMBL
Match: A0A0D2UWP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-47
Identity = 108/149 (72.48%), Postives = 127/149 (85.23%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPV + PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAAPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDN 148
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of CSPI01G07650 vs. TrEMBL
Match: W9REY7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.4e-47
Identity = 106/150 (70.67%), Postives = 122/150 (81.33%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP    +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSGKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDND 149
           DKLERRTQKA++KLME QEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEAQEKQKELAEDAPD 150

[Close]

BLAST of CSPI01G07650 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-44
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+ + PP +  KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDND 149
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

[Close]

BLAST of CSPI01G07650 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 6.9e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of CSPI01G07650 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 6.9e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of CSPI01G07650 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.7e-69
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CSPI01G07650 vs. NCBI nr
Match: gi|728847547|gb|KHG26990.1| (Coiled-coil domain-containing 12 [Gossypium arboreum])

HSP 1 Score: 199.9 bits (507), Expect = 3.2e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDN 148
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of CSPI01G07650 vs. NCBI nr
Match: gi|703088497|ref|XP_010093549.1| (hypothetical protein L484_013982 [Morus notabilis])

HSP 1 Score: 198.7 bits (504), Expect = 7.2e-48
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDND 149
           DKLERRTQKA++KLMEEQEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

The following BLAST results are available for this feature:

BLAST of CSPI01G07650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD12_HUMAN	1.3e-12	35.71	Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1	[more]
CCD12_MOUSE	8.3e-12	36.62	Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2	[more]

BLAST of CSPI01G07650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08_CUCSA	4.8e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1	[more]
A0A0B0PPQ1_GOSAR	2.2e-48	73.15	Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1	[more]
W9QTU0_9ROSA	5.0e-48	71.33	Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1	[more]
A0A0D2UWP4_GOSRA	1.5e-47	72.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1	[more]
W9REY7_9ROSA	9.4e-47	70.67	Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1	[more]

BLAST of CSPI01G07650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	1.8e-44	67.33	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of CSPI01G07650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439527\|ref\|XP_004137537.1\|	6.9e-75	100.00	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
gi\|700209127\|gb\|KGN64223.1\|	6.9e-75	100.00	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
gi\|659067001\|ref\|XP_008437152.1\|	5.7e-69	93.46	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]	[more]
gi\|728847547\|gb\|KHG26990.1\|	3.2e-48	73.15	Coiled-coil domain-containing 12 [Gossypium arboreum]	[more]
gi\|703088497\|ref\|XP_010093549.1\|	7.2e-48	71.33	hypothetical protein L484_013982 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G07650.1	CSPI01G07650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 8..135 score: 3.4
None	No IPR available	unknown	Coil	Coil	coord: 11..31 score: -coord: 118..153 scor
None	No IPR available	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 1..153 score: 7.0
None	No IPR available	PANTHER	PTHR31551:SF1	COILED-COIL DOMAIN-CONTAINING PROTEIN 12	coord: 1..153 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G07650	Cla008371	Watermelon (97103) v1	cpiwmB042
CSPI01G07650	Csa1G043260	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G07650	MELO3C002180	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G07650	ClCG01G014720	Watermelon (Charleston Gray)	cpiwcgB024
CSPI01G07650	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G07650	MELO3C002180.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G07650	CsaV3_1G007610	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G07650	Cla97C01G013730	Watermelon (97103) v2	cpiwmbB010
CSPI01G07650	Bhi08G001126	Wax gourd	cpiwgoB028
CSPI01G07650	Cucsa.122380	Cucumber (Gy14) v1	cgycpiB160
CSPI01G07650	CmaCh18G001070	Cucurbita maxima (Rimu)	cmacpiB394
CSPI01G07650	CmaCh13G009530	Cucurbita maxima (Rimu)	cmacpiB218
CSPI01G07650	CmoCh13G009890	Cucurbita moschata (Rifu)	cmocpiB204
CSPI01G07650	CmoCh18G000840	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G07650	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cpecpiB505
CSPI01G07650	Cp4.1LG09g10880	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G07650	CsGy1G007500	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G07650	Carg06662	Silver-seed gourd	carcpiB0531
CSPI01G07650	Carg04882	Silver-seed gourd	carcpiB0418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None