CsaV3_1G007610 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G007610
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	coiled-coil domain-containing protein 12
Location	chr1 : 4845086 .. 4850378 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTTCATGAGCGGATCCGATTGAACTCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGGTATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCTGTTTTAACTATTTCTTTCTCATTCCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGCTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAAAGTTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTTCGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACGTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGAATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCTTCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTCTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTAAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGATATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGGCAATGGCATTTCTGGCTTGCAACTTTACATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAACTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACACATTAATTTGGCATATGTTCCACGGTTCATTCACTTCACTTTGTCTTGTGTTGGGGCAGTTCGGATGACGTCGGAACTGCAAGCATATGTGCAAGTAAAAGGTGATTATATGATTACTATTACCTTTTACGCTTTTGATTTTTCCATTTTTGGATGCTGTTTGAATGAGGTTTCAGTTTTCAGTATTATATTGAAAATTTATTGTAAATGTCAAAACTTCTAAAAAAGTATTTACAAAGTTTCCAATTATATTTACTATCTACTATTTAATATTTTGAAAAGTATTTTATAAAGTAGTACGCAAGGGTTTTTCTCAGGAGGATAAGTTTTAAATAGTTACTCAAAATATTACTTCTTTTTTTTTCCTCCCGACGCATTTCTGTTTTCCTCTCAATATATTTCTTTCTAAATTAATGTTCTTCTTCCTCTCTCTGTTCCAAGTATCTTCCCTTCTAGTGAAAACTTTTTTTCTTAATTTGTCTTTCCTATGTTATATTGTATTCTTAATTTGTTTTTCTGATAAAACCTCTATATAACTCTATAACTCCTTTTTAATAGATTTGCCTTTCGAAAGAAAATATTATATATTTTATTTTCTTTATTCCGTAAGAGAAAAACAAGGTGTATTTTACTGCTTAGGTCAAATTGCAACTACTACCACTAAACTTTCAAAATTAAAAATTAAATTTAACAAACTATTTATATTTAAACTACTAAACGACAATTTCACTATTAAATATTTTGTCAAATGTTTTATTTTTTTTACTATTTTTTAAAAATTATTTTATCTAAAATTTAAAATTGAGCCAACAAAATTATATTTACTATTTAAACTACTAGAAGGCAACTTCATTATTATGTGTAAAATTTTTGTCAAATGTTTTATTTTTTTTACAATTTTTTCAAATTATTTTATCTAAATTTAAAATTGAGCCAACAAAATTATATAGGTATGTTATGAATTATACAATATTGAGAATTTAGTTTTCGTTGTTTTTAGATCTAATTTTAACACTTTTTAGAAGTAGAGAAAAATAAAATTGCAACCTATAGGGTATCTATAATTTGCCGTATAACTAACGCTAAATAAAATTCCATTGATACTAAAACTATAGGAAGAAACAAATATGGTTAAACGCCTGCTTCCAGGGCAGAAAATAATACATTCAGAGGAACTTGAGAACACTTCTTGCACAAAATACAAACCTCAAGAAGAAGGGAAAACATGAATTTATTAATAAAGCAAAAGGAAGGAAAGAAAGAAAGAAAAAAGAAAAAGCGAAAACCTATGAAAATACACACTATGATTGAAGATTTCCCTTGCCATTTACATATTCGTTTTTTAGTGCGGCTTCAGTCATGTATCGATGTAATTATGTGCACAGATTTATCTTCTCTTTTCTTTTTTTTTTTATCTTTGATCACTTTTTAATTGTTTAGGGGCAACAACTTGACCTCTGTTTACTATATTCTCCTCGTTCCATGAAGGATCCACTGCAGGAAGTTGGAATTCGTCTGGCTTCAGAGCTAGAGCGAAATCGGGCAATGTCGGTGCAGTCTCCACGATTCTGAATTTAAAACGCTGAATTATCAGTATTATTAATGAAAGAAGTAAAACAAAAGGGAAAAAAAAGACGAAACGTACTTTTCGAAAGAGTATAAGTCACGGTTTATCCGCACTTTGCTTGAAGCATCTTTTGGAATTTTTTCTGAGAGATACTTCATGGTTCCAAAGAGCGGCGGATTTCTGCATGAAAATATTGCAATAGTTGGGGGTAACGTTTTCAAATTTGCTAACTAAGTAAATATTTAAGGAAAGGCGCTAACGCTACATATTTAAGAAATGATATGTTTAGCTAGCTTTTAAGCAAAGCATATATCATATCTATTTCTATTTCTGAGTTTTTGATACAAAACTAAATTAATGTGAAAACAAACTATTTGATGTTTAAACTATCGGTTCTTAAACTTGATTTCTTACATTTTTAATTTTAATTTCATTTTGTGTCTAACATGTTTATGTCAAATTAAAATTTTTCTAAATTAATTGATCAAAGGTCGTATGAATTTGAATTCTATGCCAAACATTTGTCTAGGAGTTCAATCACT

mRNA sequence

ATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Coding sequence (CDS)

ATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Protein sequence

MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

Homology

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BLAST of CsaV3_1G007610 vs. NCBI nr
Match: XP_004137537.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

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BLAST of CsaV3_1G007610 vs. NCBI nr
Match: KGN64223.1 (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

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BLAST of CsaV3_1G007610 vs. NCBI nr
Match: XP_008437152.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 1.1e-68
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsaV3_1G007610 vs. NCBI nr
Match: XP_023520254.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023520255.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 2.5e-65
Identity = 138/156 (88.46%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGAT---EDSDETNLNM 60
           MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT   ED +ETNL+M
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEDPEETNLSM 60

Query: 61  KFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120
           KFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKK
Sbjct: 61  KFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120

Query: 121 LDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 121 LDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 156

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BLAST of CsaV3_1G007610 vs. NCBI nr
Match: XP_022155130.1 (coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia])

HSP 1 Score: 255.0 bits (650), Expect = 1.6e-64
Identity = 133/153 (86.93%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKAL+KLM+EQEKQK++AEGD+ +NG E
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTE 153

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BLAST of CsaV3_1G007610 vs. TAIR10
Match: AT3G05070.1 (mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-35
Identity = 89/150 (59.33%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTS--EPPQLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+ +                 KKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALXXXXXXXXXXXXXXXXKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDND 149
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

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BLAST of CsaV3_1G007610 vs. Swiss-Prot
Match: sp|Q8WUD4|CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 52/140 (37.14%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 8   VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 67
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 68  ELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKL 127
           +L++ ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 128 ERRTQKALFKLMEEQEKQKQ 142
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of CsaV3_1G007610 vs. Swiss-Prot
Match: sp|Q8R344|CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-12
Identity = 54/142 (38.03%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 8   VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET--NLNMKFRNYVPH 67
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 68  DKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLD 127
           D++L+  ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 128 KLERRTQKALFKLMEEQEKQKQ 142
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

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BLAST of CsaV3_1G007610 vs. TrEMBL
Match: tr|A0A0A0LR08|A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 8.9e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of CsaV3_1G007610 vs. TrEMBL
Match: tr|A0A1S3ATB1|A0A1S3ATB1_CUCME (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 7.3e-69
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsaV3_1G007610 vs. TrEMBL
Match: tr|A0A2P4IY42|A0A2P4IY42_QUESU (Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_08742 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 112/154 (72.73%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MA EEDS+EQ AAAR+ERL+AL+AAQELLN  DE +   E K N     ++E NLNMKFR
Sbjct: 76  MAAEEDSIEQAAAARRERLRALKAAQELLNTPDEDSGQVEYKTNDENGTNEENNLNMKFR 135

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEP-PQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120
           NYVPHDK+LQEGK++PPVLPKFEDP+ + P P  +EDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 136 NYVPHDKQLQEGKVSPPVLPKFEDPIAAAPLPSAEEDPFVNIAPKKPNWDLRRDVQKKLD 195

Query: 121 KLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 154
           KLERRTQKAL+KLMEEQEKQKQ  E D    GAE
Sbjct: 196 KLERRTQKALYKLMEEQEKQKQITEEDGG-TGAE 228

[Close]

BLAST of CsaV3_1G007610 vs. TrEMBL
Match: tr|A0A0B0PPQ1|A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum OX=29729 GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.1e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDN 148
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of CsaV3_1G007610 vs. TrEMBL
Match: tr|A0A1U8PAZ5|A0A1U8PAZ5_GOSHI (coiled-coil domain-containing protein 12-like OS=Gossypium hirsutum OX=3635 GN=LOC107957362 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.4e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALFKLMEEQEKQKQAAEGDN 148
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137537.1	1.3e-74	100.00	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
KGN64223.1	1.3e-74	100.00	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
XP_008437152.1	1.1e-68	93.46	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160...	[more]
XP_023520254.1	2.5e-65	88.46	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022155130.1	1.6e-64	86.93	coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]	[more]

BLAST of CsaV3_1G007610 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	3.3e-35	59.33	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of CsaV3_1G007610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8WUD4\|CCD12_HUMAN	1.3e-12	37.14	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
sp\|Q8R344\|CCD12_MOUSE	8.4e-12	38.03	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]

BLAST of CsaV3_1G007610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR08\|A0A0A0LR08_CUCSA	8.9e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1	[more]
tr\|A0A1S3ATB1\|A0A1S3ATB1_CUCME	7.3e-69	93.46	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
tr\|A0A2P4IY42\|A0A2P4IY42_QUESU	1.1e-48	72.73	Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_0874...	[more]
tr\|A0A0B0PPQ1\|A0A0B0PPQ1_GOSAR	4.1e-48	73.15	Coiled-coil domain-containing 12 OS=Gossypium arboreum OX=29729 GN=F383_05197 PE...	[more]
tr\|A0A1U8PAZ5\|A0A1U8PAZ5_GOSHI	5.4e-48	73.15	coiled-coil domain-containing protein 12-like OS=Gossypium hirsutum OX=3635 GN=L...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007610.1	CsaV3_1G007610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..153
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..153
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 8..135 e-value: 1.1E-31 score: 110.1
IPR013169	mRNA splicing factor, Cwf18	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 3..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G007610	CSPI01G07650	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G007610	Cucsa.122380	Cucumber (Gy14) v1	cgycucB163
CsaV3_1G007610	CmaCh13G009530	Cucurbita maxima (Rimu)	cmacucB0248
CsaV3_1G007610	CmaCh18G001070	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G007610	CmoCh13G009890	Cucurbita moschata (Rifu)	cmocucB0234
CsaV3_1G007610	CmoCh18G000840	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G007610	Cp4.1LG09g10880	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G007610	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cpecucB0623
CsaV3_1G007610	CsGy1G007500	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G007610	Carg04882	Silver-seed gourd	carcucB0418
CsaV3_1G007610	Carg06662	Silver-seed gourd	carcucB0529
CsaV3_1G007610	Cla008371	Watermelon (97103) v1	cucwmB048
CsaV3_1G007610	MELO3C002180	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G007610	ClCG01G014720	Watermelon (Charleston Gray)	cucwcgB023
CsaV3_1G007610	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G007610	MELO3C002180.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G007610	Cla97C01G013730	Watermelon (97103) v2	cucwmbB009
CsaV3_1G007610	Bhi08G001126	Wax gourd	cucwgoB031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None