Lsi02G002830 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G002830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coiled-coil domain-containing 12
Location	chr02 : 2434608 .. 2439305 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCAAGCCTTTTCCTCCCTCCCGCCATTGCTCGAAGCTTCTGAAGAAAAGTGTTATTCCTCTCGAGTTTCTCTGTAAGTATATTTCTTCTGCAGAAATCGTTAATTCTGCCGCTCGCTTTTCTTCATCTTCGTGTTGCTTCTGCCGCTGTCTACTCTTCTTTCGCTTCCTTTTGATGAATTTTTGTCATCTGTGGCTATCTCAGATGTTAATTAGATAAAATCTTTGACTGTGTGCTTTGAAGATGTCTCTTACTACCTTAATATTTCTTTAATTTTCATTTTGCGATTGTTCATCCCTTCGAATGCATATAATTGTGGTATTGTCATAGTTCTTTTGTCAAGAACAATCGAGAGTAATATTAAGTTACTTTCGTATTAGATATTTTACGCACAATAGGCAATGGCTAGTGAAGAAGACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGAAGAAACGTGAGTTTATATCTTCTTCTTCGCTATTGTTTCGGAAGTTATTTTTTCTCGCAGTTTTTCTATTCGATTTCTTGAATAAGTCTATCAATAATGATCACTTCACTTCTAAGCACATTCGTAACGTTCAGATAGGTTCAATTTGACTTCTGTGACTGCAATATCCTCTATTCTACTCTATTCTCATTTAATTTGTGTTTTTAAAGATCTATCCTATGGTATCCTCTCCAAATGTATGATCCTATACTATAATTGTACTCATAGATTAGAAGCTTAAAAAATAAGAAACATGAATGGATTTGAAAGAAACCATTGAGGAAGTTGCACAATAGTACATTAAGGCTATATCATTCTGTAGAATGATTTTAAATTCTCATATCTCCTAGAACTTGAGACTTCACTGGAAAAAAGAATATTCTATCGAAAGTAACACTATGAAGGAGATGATGAGGAGAAAAGAACAGATTTCATATTACTCTCCCGTCCTGGATGTTGTCTCCCTCTCCTCGGATTGGTGGTGTCCGTCTTCCTCTGCGGCTCTGCCTTAAACCACTCTCTTTTATCTCTGTGTTTGTTACCTGACCTATTTTCCTTCTCTTTTAACAATTTCTTTCTCATTCCCTTTCTCTTCCCATTCCTACAGCCATCCTTTTTGTATTTGTGTTTATCGTCTGACTGCTTTTCTCTCTTTTATTTTACGGTGGGAGTCCATGCTGAAATTACATACTTAGCATAGTGAGCCAAGTTCTTTGGAATCTGGCTTGTGACATGTTACAGACGACTACCTACTGCCTGCCATCGCCAGTGTGCTAAGCTCTCTAGAACTTGGTTTGTGGCATATTACAAATAAAAGCTTTGGCAATAGTATTTGCATTGTAGGGGCAGCACAAACAAAAAATGTCTTCCTCTGCTTGGTAAGCTGCATCTTTCTATTTGCAGACTAGAGTCTTGAACGGCCACAAACTCTCCAAATAGAACAGAAGACTAACCAAATATTTGATAAAATAGTATTAGAAACTAAGCTGTAAAGTTTATGTTAACCTGATGCATGTGAAGTATCCTCCCATTAATAAGATATTTGTTTCTTTTCTTTCTTTCTTTCCTTTTTTTTTGTGTATAATTCTTTCTTTCTGTCTTTCTTTTTCTTCTTTTTTTTACCTCAATTCCTTTCTAGTTTGTATTAACATTTGGGGTTGTAGGAGTTTGGGATGATGATGAGGTGGTGACAATGATGGCAATGCGACATACAACTTAACTGCTTATTTGTCTTTTGGGATATGTCTTCATGGTTACCTTCAAATGTGTTCCAATATATTTTCTCTTGCAGGGAGGAAAATGTGTTCCAATATAAATGACATCTCTTGTCCAATATATGTTTAGTTTGATGTCGTTCTCATTGACAACTCATTTGAAAAATTGATGTATACAATTACTATTTACTATGCATGTTATGTAGCTGTTCCCTCTAAGAGTGCAATATGCAGACAAACTCATTTTTTGTTGTTGAATGTTTATATGCCTCATTTGCCTCTTCAGTTCTTGATTCACTAATAAATTATCCTTTTGCAGTAATCTTAATATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTAAAAGAGGTAGTTTTGTCAGTTCTGCTTTTATATGTTCTTAAACAGGCCTATGCTTGTACTTTTTGGATCTTTTTTTATTAATTGTATTCCATCGGTAAAACTATAGGACCCATTTGTGAATATTGCTCCAAAGAAACCGAACTGGGACCTTAGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTAAGTAGAAATATTGAATTAAACTTGATAAGTCATTATTTTATGCTTGTTCTTTTACTTGCGTCATTTGGTAGTGTAACTGGACTACGAATTGAATTTTATTTGCTTTGTTTGTCTGAGAGATATCTATCTCTAGTCAATTAGCATGTACATAATATCATTTTTGTTTGCTGGTTCTGTTTCAGGGTTCAATATTTTTGCTTTCACGTATTTAACTTACTAAAAATTTCCATGTACCACAGTCGCGTTCAAGTCAACCATGTGATGTAATGTTGGTTGCAATGTTTTTCTCACATTTTTCAACCAAGTCATTGCATATACGGATTAAAGAGCCATTGCATGAAATAAATATCCCTTAGGTGAGTTAATTTAATCCTGTAAGGATGAGTTAGAGTATTTGATCTGGTTGCAAAGTACAAGAATTTCCATTTTTTTCCTTTTAAATTTTAGAAACAAGAAACAACTCCTCATTGATATAATAAAAAGGGTCAAAGGTTTAGTGATAGAGAGAAAAAAGGAAAGATACACCCATAACATTATTTAGCCATGAATATAAGCATTCAAAGAACAAAAGAGCTTTTTTCATAATCTTTGCCTAAAAGACTTGAGCTTGCAAACAGAAGCTGTATCTATGAAAAGGCCTCCACGGCTCCACCAAAAACTGAAAACCGAAACCTGCTACAACCTTCCAAAGGAAATCGTCAACCGATCATCGACCTAGCGACTTAGAAAAGTGTACAAAAACAGTTGCAAATGTATTGCTTATAGAAAATACGGATGCAACAAGTCCAACAAGACCAATGAGAACATCCTCTAAGGAGAAAAAACCAAACTGATCCTATTACCATTATTGAGGCTCTCTTCTGACCGGTATAACTCTATCACGTCACCTTTAATTCCAAACCGGAATCCAATCTCAGAAGAATAATGTTCATCAATTTTCATTTTAACAAGTTCTGAATGGATGGAATTTCTTTGCAGTTCTTTTGACTTCAATCTCAGCATACCAAGGCTAAATAAGAACGATCACAACCCTTTGTTAACTTCCACTGAATTCCTTTTATTTATTTATTGTTACCTTATGATTATCAATGATTGGGAGGTGTTGATTTTGTAGGAGGGGGTTATCTCTACCCGGATTGTAAGCTGTTTGTGCCTCCTTTATTGTTTCTATAATACTTCTCAAGTTTCTCATTAAACAACTTTGAGCATTTGGTCATCAGTTGTGAATCTTATGATTTAACAGTCTTCAATCTTGAAATTTGAACTTGCTAGGCAGTAACAGTTTGTGCGATAGGGATTTTTTGGCATCGAAGGAAGTTGTGGAGCTTAGAGTAGTATAGGGTCGGTTTAAACCATAGCTTGTGATAAACTCGTGAAGATATGTTTATCCCAACAGAAAAAGAAAAAAAAAAAGGATGTACTCGTGAAGACATGGAATGTTAGAAAGGTTGTGATTCTTTTTACTAGACAGGTTGTTTAGTTATTCATTTATTTTAAAAGGACATTACATTACAAATATGAGGTGAGACTACGAACCTATGATCATTAAAAGGAATTATTGAACCTATGAAACTACAATCTTTACGAAGAATTAAGTATGTCTTATATTCAAGTTGATGTAGGTTACTCTTAATAGCTAGTATGCATTGGAAGTTACAAAGTGATTATTATAGTTACAAGAGTGATTATTATGTAAATCATTAAAATGGTAGAAAATTATTTTGGAGCTCTGAAATTACAGAGTGGTTACACATTTAAAGCACCCATGCTTGCCTAGTTTCCTTTATGAACTCTACTCTTTACTTTCAATTTTGTGTAGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGGGATAGTATAGCACACAAGTTATGAGCTCTCCGATATTATAGTTGCAATAATATTCACGGCTATTCTTGACATGCTTGGAGAAATTTGTCACTAAAGGACGATGGTGTTTCTGGTTCATAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTTAATTTAGTTTTTATCTATATGGTGACTCATGGTGTTCCTTGACTAATTAGACCTCATACTGTATCTCATACTGGATAGTAATTTGTAATTTACCTATACTAAGAATAACTTTGTATTTCACTTTATCTTCTTTACGAACCGTTTTTTTCCCCATTTTTATCTGCTAGTTTATAATCTAC

mRNA sequence

GCGCAAGCCTTTTCCTCCCTCCCGCCATTGCTCGAAGCTTCTGAAGAAAAGTGTTATTCCTCTCGAGTTTCTCTATATTTTACGCACAATAGGCAATGGCTAGTGAAGAAGACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGAAGAAACACGACTACCTACTGCCTGCCATCGCCAGTGTGCTAAGCTCTCTAGAACTTGTAATCTTAATATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAGAAACCGAACTGGGACCTTAGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGGGATAGTATAGCACACAAGTTATGAGCTCTCCGATATTATAGTTGCAATAATATTCACGGCTATTCTTGACATGCTTGGAGAAATTTGTCACTAAAGGACGATGGTGTTTCTGGTTCATAGGGTCAGTTTTTCTGTGACCTTTCTGATCATTCTTGGCTGCAAATCTTTTAATTTAGTTTTTATCTATATGGTGACTCATGGTGTTCCTTGACTAATTAGACCTCATACTGTATCTCATACTGGATAGTAATTTGTAATTTACCTATACTAAGAATAACTTTGTATTTCACTTTATCTTCTTTACGAACCGTTTTTTTCCCCATTTTTATCTGCTAGTTTATAATCTAC

Coding sequence (CDS)

ATGGCTAGTGAAGAAGACTCCGTCGAGCAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAGCACTTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATACTGAAGAAACACGACTACCTACTGCCTGCCATCGCCAGTGTGCTAAGCTCTCTAGAACTTGTAATCTTAATATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTACTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAGAAACCGAACTGGGACCTTAGGAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATGGTGCAGAGGGATAG

Protein sequence

MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACHRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAEG

Homology

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BLAST of Lsi02G002830 vs. Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 1


Query: 8   VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGA--TADTEETRLPTACHRQCAK 67
           +E+ A  RKERLKALR           + +G +DKE+G   T    E       HR+   
Sbjct: 11  LEEEALRRKERLKALR-----------EKTGRKDKEDGEPKTKHLREEEEEGEKHRE--- 70

Query: 68  LSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFV------NIA 127
                   ++ RNYVP D++L++ ++        E+ V  +    K +P +      N+A
Sbjct: 71  --------LRLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLA 130

Query: 128 PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA 161
           P+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 PRKPDWDLKRDVAKKLEKLKKRTQRAIAELIRERLKGQEDS 149

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BLAST of Lsi02G002830 vs. Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 1


Query: 8   VEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGA--TADTEETRLPTACHRQCAK 67
           +E+ A  RKERLKALR           + +G +D+E+G   T    E       HR    
Sbjct: 11  LEEEALRRKERLKALR-----------EKTGRKDREDGEPQTKQLREEGEEVGKHR---- 70

Query: 68  LSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFV------NIA 127
                   ++ RNYVP D++L+  ++        E+ V  +    K +P +      N+A
Sbjct: 71  -------GLRLRNYVPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLA 130

Query: 128 PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA 161
           P+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 PRKPDWDLKRDVAKKLEKLEKRTQRAIAELIRERLKGQEDS 149

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BLAST of Lsi02G002830 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-66
Identity = 142/170 (83.53%), Postives = 151/170 (88.82%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ET       
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET------- 101

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAP 120
                     NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVNIAP
Sbjct: 102 ----------NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAP 161

Query: 121 KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 171
           KKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Sbjct: 162 KKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

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BLAST of Lsi02G002830 vs. TrEMBL
Match: W9QTU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-44
Identity = 108/167 (64.67%), Postives = 123/167 (73.65%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+E+DS++Q  AAR+ERLKAL+AAQ LL+T DE +   EDK+N      EET       
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREET------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPFVNI 120
                     N NMKFRNYVPHD+ LQEGK+APPVLPKFEDPV   PP  + +EDPFVNI
Sbjct: 61  ----------NPNMKFRNYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNI 120

Query: 121 APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDD 166
           APKKPNWDLRRDVQKK DKLERRTQKA+YKLMEEQEKQK+ AE   D
Sbjct: 121 APKKPNWDLRRDVQKKFDKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

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BLAST of Lsi02G002830 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-44
Identity = 106/164 (64.63%), Postives = 125/164 (76.22%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+EE+S+EQ AA+R+ERLKAL+AAQELL+  DE +S   + +   T DT E   P+   
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSSQASENQ---TDDTNEENNPS--- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPFVNI 120
                        MKFRNYVPHDK+LQEGK+APPVLPKFEDPV  EPP  + KEDPFVNI
Sbjct: 61  -------------MKFRNYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNI 120

Query: 121 APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEG 163
           APKKPNWDLRRDVQKKLDKLERRTQKA++KLME+QE++KQ  EG
Sbjct: 121 APKKPNWDLRRDVQKKLDKLERRTQKAIFKLMEQQEQEKQLDEG 145

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BLAST of Lsi02G002830 vs. TrEMBL
Match: A0A059AVC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44
Identity = 105/170 (61.76%), Postives = 128/170 (75.29%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           M  E+DS+EQ  AAR+ERL+ALRAAQELL+   E ++   D ++    + +E     A  
Sbjct: 1   MGEEDDSIEQAVAARRERLRALRAAQELLNAPSEDSAAQADGKSDGENENDENDEDDAQE 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQL-KEDPFVNIA 120
                     N +MKFRNYVPHDK+LQEGK+APPVLPKFEDPV TEPP   K+DPF+NIA
Sbjct: 61  E---------NPSMKFRNYVPHDKQLQEGKVAPPVLPKFEDPVATEPPPAEKKDPFINIA 120

Query: 121 PKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGA 170
           PKKPNWDLRRDVQKKLDKLERRTQKA+YK+++EQEKQK+ AE +D +NGA
Sbjct: 121 PKKPNWDLRRDVQKKLDKLERRTQKAMYKIVQEQEKQKEKAE-EDGENGA 160

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BLAST of Lsi02G002830 vs. TrEMBL
Match: W9REY7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 107/167 (64.07%), Postives = 121/167 (72.46%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+E+DS++Q  AAR+ERLKAL+AAQ LL+T DE +   EDK+N      EET       
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREET------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQL--KEDPFVNI 120
                     N NMKFRNYVPHD+ LQEGK+APPVLPKFEDPV   PP    +EDPFVNI
Sbjct: 61  ----------NPNMKFRNYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSGKEEDPFVNI 120

Query: 121 APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDD 166
           APKKPNWDLRRDVQKK DKLERRTQKA+YKLME QEKQK+ AE   D
Sbjct: 121 APKKPNWDLRRDVQKKFDKLERRTQKAIYKLMEAQEKQKELAEDAPD 150

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BLAST of Lsi02G002830 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 102/165 (61.82%), Postives = 114/165 (69.09%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MASE++S+EQ AAARKE LKALRAAQEL           E KE+G     EE        
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEED------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQL--KEDPFVNI 120
                        MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP +  KEDPFVNI
Sbjct: 61  ----------GPAMKFRNYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNI 120

Query: 121 APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD 164
           APKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 121 APKKPNWDLRRDVQKKLDKLERRTQKAMHKLMEEQEKEREMAEAD 138

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BLAST of Lsi02G002830 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 4.5e-67
Identity = 145/170 (85.29%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+EEDS EQVAAARKERLKALRAAQELL+ SDEKNS GEDKENGATADT+ET       
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDET------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAP 120
                     NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQ KEDPFVNIAP
Sbjct: 61  ----------NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAP 120

Query: 121 KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 171
           KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNGAE
Sbjct: 121 KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

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BLAST of Lsi02G002830 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-66
Identity = 142/170 (83.53%), Postives = 151/170 (88.82%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ET       
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAP 120
                     NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVNIAP
Sbjct: 61  ----------NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAP 120

Query: 121 KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 171
           KKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Sbjct: 121 KKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of Lsi02G002830 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-66
Identity = 142/170 (83.53%), Postives = 151/170 (88.82%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+EEDSVEQVAAARKERLKALRAAQELL+ SDEKNSGGEDKENGAT D++ET       
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET------- 101

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQLKEDPFVNIAP 120
                     NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQLKEDPFVNIAP
Sbjct: 102 ----------NLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAP 161

Query: 121 KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 171
           KKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Sbjct: 162 KKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of Lsi02G002830 vs. NCBI nr
Match: gi|703088497|ref|XP_010093549.1| (hypothetical protein L484_013982 [Morus notabilis])

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-44
Identity = 108/167 (64.67%), Postives = 123/167 (73.65%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATADTEETRLPTACH 60
           MA+E+DS++Q  AAR+ERLKAL+AAQ LL+T DE +   EDK+N      EET       
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREET------- 60

Query: 61  RQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPFVNI 120
                     N NMKFRNYVPHD+ LQEGK+APPVLPKFEDPV   PP  + +EDPFVNI
Sbjct: 61  ----------NPNMKFRNYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNI 120

Query: 121 APKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDD 166
           APKKPNWDLRRDVQKK DKLERRTQKA+YKLMEEQEKQK+ AE   D
Sbjct: 121 APKKPNWDLRRDVQKKFDKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

[Close]

BLAST of Lsi02G002830 vs. NCBI nr
Match: gi|719963148|ref|XP_010248821.1| (PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 186.8 bits (473), Expect = 3.1e-44
Identity = 112/172 (65.12%), Postives = 130/172 (75.58%), Query Frame = 1


Query: 1   MASEEDSVEQVAAARKERLKALRAAQELLSTSDEKNSGGEDKENGATAD-TEETRLPTAC 60
           M +EEDS+EQ AAAR+ERLKALRAAQ+LL+T DE ++  EDK     AD T E +     
Sbjct: 8   MTTEEDSIEQAAAARRERLKALRAAQDLLNTPDEDSTQKEDKPEEEDADETNENK----- 67

Query: 61  HRQCAKLSRTCNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPP--QLKEDPFVN 120
                       LNMKFRNY+PHDK+LQEGKLAPPVLPKFEDPV TEPP  Q  EDPFVN
Sbjct: 68  -----------TLNMKFRNYLPHDKQLQEGKLAPPVLPKFEDPVATEPPPSQKTEDPFVN 127

Query: 121 IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGA 170
           IAPKKPNWDLRRDVQK+L+KLERRTQKA+++LMEE ++QKQ AE    +NGA
Sbjct: 128 IAPKKPNWDLRRDVQKRLEKLERRTQKAIFQLMEE-DRQKQEAE----ENGA 158

The following BLAST results are available for this feature:

BLAST of Lsi02G002830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD12_HUMAN	2.1e-11	33.54	Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1	[more]
CCD12_MOUSE	2.1e-11	33.54	Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2	[more]

BLAST of Lsi02G002830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08_CUCSA	1.2e-66	83.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1	[more]
W9QTU0_9ROSA	1.7e-44	64.67	Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1	[more]
A0A0B0PPQ1_GOSAR	3.7e-44	64.63	Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1	[more]
A0A059AVC5_EUCGR	6.4e-44	61.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1	[more]
W9REY7_9ROSA	2.4e-43	64.07	Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1	[more]

BLAST of Lsi02G002830 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	1.2e-41	61.82	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of Lsi02G002830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067001\|ref\|XP_008437152.1\|	4.5e-67	85.29	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]	[more]
gi\|449439527\|ref\|XP_004137537.1\|	1.7e-66	83.53	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
gi\|700209127\|gb\|KGN64223.1\|	1.7e-66	83.53	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
gi\|703088497\|ref\|XP_010093549.1\|	2.4e-44	64.67	hypothetical protein L484_013982 [Morus notabilis]	[more]
gi\|719963148\|ref\|XP_010248821.1\|	3.1e-44	65.12	PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G002830.1	Lsi02G002830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 8..152 score: 3.2
None	No IPR available	unknown	Coil	Coil	coord: 128..163 scor
None	No IPR available	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 1..46 score: 3.9E-49coord: 64..170 score: 3.9
None	No IPR available	PANTHER	PTHR31551:SF1	COILED-COIL DOMAIN-CONTAINING PROTEIN 12	coord: 64..170 score: 3.9E-49coord: 1..46 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G002830	Csa1G043260	Cucumber (Chinese Long) v2	culsiB022
Lsi02G002830	CSPI01G07650	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G002830	Cucsa.122380	Cucumber (Gy14) v1	cgylsiB181
Lsi02G002830	CmaCh13G009530	Cucurbita maxima (Rimu)	cmalsiB208
Lsi02G002830	CmaCh18G001070	Cucurbita maxima (Rimu)	cmalsiB370
Lsi02G002830	CmoCh18G000840	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G002830	CmoCh13G009890	Cucurbita moschata (Rifu)	cmolsiB198
Lsi02G002830	Cla008371	Watermelon (97103) v1	lsiwmB199
Lsi02G002830	MELO3C002180	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G002830	ClCG01G014720	Watermelon (Charleston Gray)	lsiwcgB173
Lsi02G002830	MELO3C002180.2	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G002830	Cla97C01G013730	Watermelon (97103) v2	lsiwmbB158
Lsi02G002830	Bhi08G001126	Wax gourd	lsiwgoB238
Lsi02G002830	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cpelsiB418
Lsi02G002830	Cp4.1LG09g10880	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G002830	CsGy1G007500	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G002830	Carg04882	Silver-seed gourd	carlsiB353
Lsi02G002830	Carg06662	Silver-seed gourd	carlsiB447
Lsi02G002830	CsaV3_1G007610	Cucumber (Chinese Long) v3	cuclsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None