CmaCh13G009530 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G009530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	U6 snRNA-associated Sm-like protein LSm8
Location	Cma_Chr13 : 7479661 .. 7484793 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCGGACTCGAATCTCTGGTTGATCGTAAGTAATCTCACTTATAATCCCTCAAATTGTTCAATTTTTTAAAATTGACTTTTCCTTTATTGTACTATTCCAAATCTTCTCATCCGCTTGCACTAAAATTTTCCTCTTAATGTTTTTCAGAAACAATATCAGTTATCACAAATGACGGTAGCAATATAGTGGTATGTTCATGAGCTATCATCCGGTTGACTTGTATTTCATCCACCCAATTTGTGTTTATACTAATGATACTTTATTCAGGGAGTGTTGGAAGGATTCGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGCGTTCACTCGACCAAGGTTTGTACAATCATCAATGTAGCTAAGATGTCTTTTATCCACTCTATTTTATCAATGTGTTTGAACTTCCTATTAGAATAATTTCTGTGACATTTGTATTTTGAATGCGTTATCTGCTTCTGCTTCTCCTTTTAATGCATTTCTATTCTGTTTGTTCAAACAAAAAAATTTCATACTTCGCTGATTATTGTTTTCACCATAAGGAAAGCATATTTTCACGGATACCAAATATTACCTCATTTGCTAGACTCTGCCCTCATGCTGTGTTAGATTTCCTCCTTCTGAAGCATGCCCCAGTTTGATTTTTAGATTTTTATATCACATTTTTGTCACTTTAAATAGTATATTTCTATAGTTTTTGTTTGTCAGTTCATAGTTCATAGTTCATATTACATCTACTACCATTTTCATATGGATTTTAAATTTAAATGTGTGAACAGATAAGTTTTCATGTGATATAGGTCGCTTGAATTTCGAATCTCGCTTTCAAGGGATTTAACATCATTATGCCTTTGCCCTTCGAATCCCATCTTTTTAACTAATTCTAATCTTGGTTTGCAGTAAGGCGGTTCAACATCTCGTTTTGGGTCTATATATAATCAGAGGCGACAATATGTAACTACCATCTCCTTATCATTTTCTGGAGAAGAACATGTTCAACTAAACTACTTTTAAATTTTGATTTTTTCTTATTTTCATTTTGTATATTTTACCATTTTGAAATTGTTGGGGAGCTAGATGAGGAGCTTGATTCTAATCTGGATTTGTCAAAGCTGAGAGCTCATCCTTAATTGTATCAGGAAGCAAAGCATGAGTAGGGAACTAAAGAATCTTGTGAGGGTGTTTTAAAAACTTTGATAAAAAGTCCAAATAACACAATATCTACTAGCGGTGGACTTGAGCTGGTACATAAATACTTGAGCTGGTACATAAATATTTGAGGTATTTTGTGATTAAGTATCCAATATTATTATTAAATGTAATGTTGGAGAGTTAGTTGTTGAATAAAGAAGGTATAAATTGACTTGAACTTTAGCGGATAATAAAATTAACTCAAAATTAACTCATAACTCGTGTTTAAGAATTAGAGGATTGTGTGAACTCAAAATTACTAGTTATTTGTTCTTTATTTATTGTTTAAACTCGTATTTGTTTGAGAAAAAATAATGTAATATTATTTAATACAAAATATTCATTAACACATCCAAATTGAAATTGATTCTAAAATATTAATTGGAAGTGATGTTAAAATTAATTTTTTTTTTAGGTTTTAAATTAACATACAAATTAGAGATTAATACAAAGTTTATATGGTAATTGAAATGCTGTTGAATTATACAATGCACTATTTTAATACTGGTAACAATTTTTTACCAATTTTTAAATTTCATCCTATTTACCTCAAACTTGAATATATATTATTAAATTCCTGATGGCCTAAACCGGGCCTGGTATATATAGCTCATTCCGAGAGGGCAAGGCATTTTTGCAGGTGACGAAACACACACTTTCCTCCCGTCCTGCCAAGGACGAAACACTCACTTTCCTCCCGCCCTCCCGCCAAAGACGAAACACTCACTTTCCTTCAGCCAAAGACGAAACACTCGCTTTCCTCCCGCCATTGCTCGAAGCTTCTGAAGCGATTCTTGCGAGTACAAAGTTTGTGAAGAATATTGCCTTTCCTCTCGAGTTTTTCTGTAAGCTAATTTCGTCTGCAGAAATCGTTAATTACATCTCTTGCTTCTTCCTCTCTGTGTTGTTTTCGCCGCTGTCTACTCTTTTTTCGCTTCCTTTTGATGAATTTTTGTCATCTGTGACTATCTTATAGGTTAGTTAGATGAAACACCTGACTGTGTACTTGAAAATGTCTTGTAATACCTTGCGTTTTCTTTAATTTGCCTTTCGTGATTCTTCATCCCTTCGAATGCATTTAATTGTGGAATTGTCTTAGATCATTTGTCGAGAACAATCGAAACTGATATTGAGATATTTTCGTATCTGATATTGTACGTAGGCAATGGCTACTGAAGACGACTCCGTCAAACAAGTTGCTGCAGCACGTAAAGAGCGATGGAGAGCTTTTAAGAGCTGCTCAGGAATTGTTAACCGCTTCAGATGAGAAGAACTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGAAGATCCTGAAGAAACGTGAGTGTATCTTTTTCTTCACTTGTATTGGAACTTATTTTTTCTGGCAGTTTTTTATTCGATTTCTCGAGTTAGTCCATCAATAATGATTGTATTGTATTGCTCAAATTTTGGAAAGTTATTCTTCTATTCATGGATCGCTTTGTTTCTAAGCACATCTGAAACGTTCAGGTAAGTTTAATTTGATTTCTCTGTCTGTAGTATCCTCTCTCTAGTCTGTTCAACTCTATTCTCATTTATTTGTGTTTCTAAAGATCTAGCCTATGACATCTTCTCTAAATGTAGGATGCTAAACTATAATTCTTCTCATAGATTAGAAGCTTCTAACCTACAGAAACATGAATGATTTGAAAGAAAATATCGAGAAAGTTGCACAACAATCCATTAAGGCTACATCCCGTAGAAAAAAATTAATTGCTCATATCTCCTAGAAATTGAGACTCCAGCGGAAAAAAAAAAAATTCATCGAAAGTAGCGCTATAAAGGAGATGAGGAGGTGAAAAGAATAGATTTCATGCTACTCTCTCTGACCTGAATGTCTGTCTCCTTCTACTAGGAACGATGATGTCCTTCTTCCTATGCCTTCAACCACTTTCTTTCTATCTTTGTTTTTGTTGTCTGACCTCTTTCCATCCTATTTTAACTATTTCTCTCTTCCTCTTCCTCTAGCCTCCCATTTTTGTACTTTCACTTTACGGTGGGAGTCCATACTGGAATCACATGCTTGCACAGTGAGCCAAGTTCTCTATAATCTGGCTTGGGACATGTTACAGATCATTACTGCATGCTATTGCCAGTGTGCCAAGCTCTCTAAAACTTGTTTTGGAACATATTACAAATGACAGGCTTGGCAATAGTATCCGTGCATTGTCGAGGCTGCACAGTCAAAAGTTGTCCTCATTTCGTCAATAAGCTGCATCTTTCTGTTTGCAGACTAGAGTCATAAATGGCCACAAAAGGTCCAAATAGAACAGAAGACTAGCCAAATATTTGATAAAATAGTATTAGGAACCAAGCTGCAAAGTTTATGTTAGCATGGTGCATACGAAGCATGCTTGTAAAAGTATCTTCCCATTCACTAAGATATTTCCTTCATTTTTTTTTTAATATTTTTAAATTCTACCCTATCTTTTTCTTTTTTAATTTCTAGATCTTAATATTGTTTGGGCTGGTAGACTTTTAGATGATGATAATGTGATAACACTGATGGCAACATACAGCTTGACTGCTTATTTATCTTTTGAGATATATTCATAAAAAGATCTTTTGTGTTATGTTTTCACGGTTACCTTCAAAAGTGTTTCAACATATTTTCTCTCTTGCATGGGAAAAATGTGTTCCTATAAATGACATTCTTTTGTCCACTAAATATATGTTTAGTGATATCATTGCCAACTCATTTGAAAAGTTGACGTACAAAGATACTATGCTAGTTAAGTACCTTTTCCCTCTTGCAATGAGTGCAAAATACGGGCAAACTCATTTCTTGTTGGATTTTTATGTGCCTCGTTTTCCTTCTCAGTTCTTGATTCACTAATAAATTATCCTTTTTCAGTAATCTTAGTATGAAATTTCGAAACTATGTTCCTCATGATAAGGAGCTTCAGGGGGAAAGCTTGTTCCACCTATATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACTAAAAGAGGTAGTTTTTTCAGTTCTTCTTTTATATGTTCTTAAACTAACCATTGCTTGTACTTTTCGGGTCTTTTGTATTAATTACATTCCATTGGAAATTTGTAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTTTGGGTGAGTAGGAATTTTGAATTAAAGCTCTGCGAACTTCATAAGTCTCTGTTTTATGTTCATTCTTTTACTCGCTTCATTTGGTTTAGTAATTGGATGTGGAAAATTTAATTTATTCGCTTTGTTTGTCTGGAAAGATATCTATCTCTAGTCAATTAGCATATATATAATATTGTTTTTATCTGCTAGTTCTATCTTGTGGTTCCATACATATATATATATATTTCATGTATTTTACAATACTTCACAAGTTTCTTATTAAAAAAAATTGAACTCTATCAATTGTGGATCTTTTCATTTAACAGTCATCCCTGCTGGGTAGTTAAAGTTGGGGGATTTCTGGGTATCGAGGGAAGTTGTGAAGATTGGAGTAGAATAGGGCTAGTTTAAACTATAACCTTCCCGTCTTTAAAGGAAATTATTGAACCTAAGAAACTACAATCTTTAGGAGGAATCAGGATGCCCCATATAGTTGTATTCAAGTTGATGTAGGTTACTCTCATTACCGTATGCATTGGAAGTTACAAGAGTGATTATTGTGTGTATCATAAGATGGTAGAAAATGATATGAAGCTCCTAAAATTTAATAGTGGTTACAACTTAGAGCACCCTTCTTGCCTTTATGAACTTTATTTTCGTGCAATTTTTTTTTGTAGAGGAACAGGAAAAACAAAAGCAGTCAGTCGAAGGAGACGATGACCAAAATATTACAGAATGA

mRNA sequence

ATGGCCCCGGACTCGAATCTCTGGTTGATCGTAAAAACAATATCAGTTATCACAAATGACGGTAGCAATATAGTGGGAGTGTTGGAAGGATTCGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGCGTTCACTCGACCAAGTTTTTTAAGGCGGTTCAACATCTCGTTTTGGGTCTATATATAATCAGAGGCGACAATATCTCATTCCGAGAGGGCAAGGCATTTTTGCAGGTGACGAAACACACACTTTCCTCCCGTCCTGCCAAGGACGAAACACTCACTTTCCTCCCGCCCTCCCGCCAAAGACGAAACACTCACTTTCCTTCAGCCAAAGACGAAACACTCGCTTTCCTCCCGCCATTGCTCGAAGCTTCTGAAGCGATTCTTGCGAGTACAAAGCAATGGCTACTGAAGACGACTCCGTCAAACAAGTTGCTGCAGCACGTAAAGAGCGATGGAGAGCTTTTAAGAGCTGCTCAGGAATTGTTAACCGCTTCAGATGAGAAGAACTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGAAGATCCTGAAGAAACTCCATCAATAATGATTGTATTGTATTGCTCAAATTTTGGAAAGTTATTCTTCTATTCATGGATCGCTTTGTTTCTAAGCACATCTGAAACGTTCAGATCATTACTGCATGCTATTGCCAGTGTGCCAAGCTCTCTAAAACTTGTTTTGGAACATATTACAAATGACAGGCTTGGCAATAGTATCCGTGCATTGTCGAGGCTGCACAGAGCTTCAGGGGGAAAGCTTGTTCCACCTATATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTTTGGAGGAACAGGAAAAACAAAAGCAGTCAGTCGAAGGAGACGATGACCAAAATATTACAGAATGA

Coding sequence (CDS)

ATGGCCCCGGACTCGAATCTCTGGTTGATCGTAAAAACAATATCAGTTATCACAAATGACGGTAGCAATATAGTGGGAGTGTTGGAAGGATTCGACCAGGCTACAAATATTATCCTCGATGAATCTCATGAACGCGTTCACTCGACCAAGTTTTTTAAGGCGGTTCAACATCTCGTTTTGGGTCTATATATAATCAGAGGCGACAATATCTCATTCCGAGAGGGCAAGGCATTTTTGCAGGTGACGAAACACACACTTTCCTCCCGTCCTGCCAAGGACGAAACACTCACTTTCCTCCCGCCCTCCCGCCAAAGACGAAACACTCACTTTCCTTCAGCCAAAGACGAAACACTCGCTTTCCTCCCGCCATTGCTCGAAGCTTCTGAAGCGATTCTTGCGAGTACAAAGCAATGGCTACTGAAGACGACTCCGTCAAACAAGTTGCTGCAGCACGTAAAGAGCGATGGAGAGCTTTTAAGAGCTGCTCAGGAATTGTTAACCGCTTCAGATGAGAAGAACTCTGGAGGAGAGGATAAAGAGAATGGTGCTACTGAAGATCCTGAAGAAACTCCATCAATAATGATTGTATTGTATTGCTCAAATTTTGGAAAGTTATTCTTCTATTCATGGATCGCTTTGTTTCTAAGCACATCTGAAACGTTCAGATCATTACTGCATGCTATTGCCAGTGTGCCAAGCTCTCTAAAACTTGTTTTGGAACATATTACAAATGACAGGCTTGGCAATAGTATCCGTGCATTGTCGAGGCTGCACAGAGCTTCAGGGGGAAAGCTTGTTCCACCTATATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTTTGGAGGAACAGGAAAAACAAAAGCAGTCAGTCGAAGGAGACGATGACCAAAATATTACAGAATGA

Protein sequence

MAPDSNLWLIVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDNISFREGKAFLQVTKHTLSSRPAKDETLTFLPPSRQRRNTHFPSAKDETLAFLPPLLEASEAILASTKQWLLKTTPSNKLLQHVKSDGELLRAAQELLTASDEKNSGGEDKENGATEDPEETPSIMIVLYCSNFGKLFFYSWIALFLSTSETFRSLLHAIASVPSSLKLVLEHITNDRLGNSIRALSRLHRASGGKLVPPILPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLLEEQEKQKQSVEGDDDQNITE

Homology

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BLAST of CmaCh13G009530 vs. Swiss-Prot
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 9  LIVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGD 68
          L+ + ISVITNDG NIVGVL+GFDQATNIILDESHERV STK  + VQ  VLGLYIIRGD
Sbjct: 10 LVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTK--EGVQQHVLGLYIIRGD 69

Query: 69 NI 71
          NI
Sbjct: 70 NI 69

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BLAST of CmaCh13G009530 vs. Swiss-Prot
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-13
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 10 IVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDN 69
          I +T++VIT+DG  IVG L+GFDQ  N+ILDESHERV S+   + V+ +VLGLYI+RGDN
Sbjct: 9  INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSS--QGVEQVVLGLYIVRGDN 68

Query: 70 IS 72
          ++
Sbjct: 69 VA 68

[Close]

BLAST of CmaCh13G009530 vs. Swiss-Prot
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-13
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 10 IVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDN 69
          I +T++VIT+DG  IVG L+GFDQ  N+ILDESHERV S+   + V+ +VLGLYI+RGDN
Sbjct: 9  INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSS--QGVEQVVLGLYIVRGDN 68

Query: 70 IS 72
          ++
Sbjct: 69 VA 68

[Close]

BLAST of CmaCh13G009530 vs. Swiss-Prot
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-13
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 10 IVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDN 69
          I +T++VIT+DG  IVG L+GFDQ  N+ILDESHERV S+   + V+ +VLGLYI+RGDN
Sbjct: 9  INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSS--QGVEQVVLGLYIVRGDN 68

Query: 70 IS 72
          ++
Sbjct: 69 VA 68

[Close]

BLAST of CmaCh13G009530 vs. Swiss-Prot
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-13
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 10 IVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDN 69
          I +T++VIT+DG  IVG L+GFDQ  N+ILDESHERV S+   + V+ +VLGLYI+RGDN
Sbjct: 9  INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSS--QGVEQVVLGLYIVRGDN 68

Query: 70 IS 72
          ++
Sbjct: 69 VA 68

[Close]

BLAST of CmaCh13G009530 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK 322
           GKL PP+LPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+K
Sbjct: 113 GKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFK 172

Query: 323 LLEEQEKQKQSVEGDDDQNITE 345
           L+EEQEKQKQ+ EGD+D+N  E
Sbjct: 173 LMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of CmaCh13G009530 vs. TrEMBL
Match: A0A059AVC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.0e-25
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQL-KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALY 322
           GK+ PP+LPKFEDPVATEPP   K+DPF+NIAPKKPNWDLRRDVQKKLDKLERRTQKA+Y
Sbjct: 80  GKVAPPVLPKFEDPVATEPPPAEKKDPFINIAPKKPNWDLRRDVQKKLDKLERRTQKAMY 139

Query: 323 KLLEEQEKQKQSVEGDDDQNITE 345
           K+++EQEKQK+  E D +   +E
Sbjct: 140 KIVQEQEKQKEKAEEDGENGASE 162

[Close]

BLAST of CmaCh13G009530 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.6e-24
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL 322
           GK+ PP+LPKFEDPVA EPP  + KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA+
Sbjct: 70  GKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAI 129

Query: 323 YKLLEEQEKQKQSVEG 337
           +KL+E+QE++KQ  EG
Sbjct: 130 FKLMEQQEQEKQLDEG 145

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BLAST of CmaCh13G009530 vs. TrEMBL
Match: D7T7D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g00370 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-23
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL 322
           GKL PP+LPKFEDPVA  PP  + KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA+
Sbjct: 67  GKLAPPVLPKFEDPVAAAPPPSEEKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAI 126

Query: 323 YKLLEEQEKQKQSVEGDDDQNITE 345
           +KL+EEQEK+ Q  E  D  N++E
Sbjct: 127 FKLMEEQEKENQLAE--DGGNVSE 148

[Close]

BLAST of CmaCh13G009530 vs. TrEMBL
Match: M4FEE4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 264 KLVPPILPKFEDPVATEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALY 323
           K+VPP LPKFEDPVA  PP +  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA+Y
Sbjct: 66  KVVPPELPKFEDPVAALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAMY 125

Query: 324 KLLEEQEKQKQSVEGDDD 340
           KL+EE EK++++VE D++
Sbjct: 126 KLMEEHEKERETVEADEN 143

[Close]

BLAST of CmaCh13G009530 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-26
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL 322
           GKL PP LPKFEDP+   PP +  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKA+
Sbjct: 62  GKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAM 121

Query: 323 YKLLEEQEKQKQSVEGD 338
           +KL+EEQEK+++  E D
Sbjct: 122 HKLMEEQEKEREMAEAD 138

[Close]

BLAST of CmaCh13G009530 vs. TAIR10
Match: AT1G65700.3 (AT1G65700.3 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-13
Identity = 49/103 (47.57%), Postives = 53/103 (51.46%), Query Frame = 1


Query: 9   LIVKTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTK------------------ 68
           L+ + ISVITNDG NIVGVL+GFDQATNIILDESHERV STK                  
Sbjct: 10  LVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRKLTQIFKIG 69

Query: 69  ----FFKAVQHLV-------------------LGLYIIRGDNI 71
               FF  +   V                   LGLYIIRGDNI
Sbjct: 70  LVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNI 112

[Close]

BLAST of CmaCh13G009530 vs. TAIR10
Match: AT1G19120.1 (AT1G19120.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-06
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 12 KTISVITNDGSNIVGVLEGFDQATNIILDESHERVHSTKFFKAVQHLVLGLYIIRGDNI 71
          K + V+  DG  ++G+L  FDQ  N +L+E++ERV     +  +    LGLYIIRG+N+
Sbjct: 21 KKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIP---LGLYIIRGENV 76

[Close]

BLAST of CmaCh13G009530 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK 322
           GKL PP+LPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK
Sbjct: 72  GKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK 131

Query: 323 LLEEQEKQKQSVEGDDDQNITE 345
           L+EEQEKQKQ+ EGDDDQN  E
Sbjct: 132 LMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CmaCh13G009530 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK 322
           GKL PP+LPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+K
Sbjct: 72  GKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFK 131

Query: 323 LLEEQEKQKQSVEGDDDQNITE 345
           L+EEQEKQKQ+ EGD+D+N  E
Sbjct: 132 LMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of CmaCh13G009530 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYK 322
           GKL PP+LPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+K
Sbjct: 113 GKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFK 172

Query: 323 LLEEQEKQKQSVEGDDDQNITE 345
           L+EEQEKQKQ+ EGD+D+N  E
Sbjct: 173 LMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of CmaCh13G009530 vs. NCBI nr
Match: gi|702433948|ref|XP_010069536.1| (PREDICTED: coiled-coil domain-containing protein 12 [Eucalyptus grandis])

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVATEPPQL-KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALY 322
           GK+ PP+LPKFEDPVATEPP   K+DPF+NIAPKKPNWDLRRDVQKKLDKLERRTQKA+Y
Sbjct: 80  GKVAPPVLPKFEDPVATEPPPAEKKDPFINIAPKKPNWDLRRDVQKKLDKLERRTQKAMY 139

Query: 323 KLLEEQEKQKQSVEGDDDQNITE 345
           K+++EQEKQK+  E D +   +E
Sbjct: 140 KIVQEQEKQKEKAEEDGENGASE 162

[Close]

BLAST of CmaCh13G009530 vs. NCBI nr
Match: gi|1021571667|ref|XP_016176966.1| (PREDICTED: coiled-coil domain-containing protein 12 [Arachis ipaensis])

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 263 GKLVPPILPKFEDPVA-TEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALY 322
           GKL P +LPKFEDP A   PP   EDPF+NIAPKKPNWDLRRDVQKKLDKLE+RTQKALY
Sbjct: 82  GKLAPAVLPKFEDPAAPAPPPDTTEDPFLNIAPKKPNWDLRRDVQKKLDKLEKRTQKALY 141

Query: 323 KLLEEQEKQKQSVEGDDDQNITE 345
           KL+EEQEKQKQ +EG++    T+
Sbjct: 142 KLMEEQEKQKQLIEGEESNGTTD 164

The following BLAST results are available for this feature:

BLAST of CmaCh13G009530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM8_ARATH	1.7e-17	79.03	Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1	[more]
LSM8_PONAB	3.4e-13	59.68	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3	[more]
LSM8_HUMAN	3.4e-13	59.68	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3	[more]
LSM8_BOVIN	3.4e-13	59.68	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3	[more]
LSM8_MOUSE	3.4e-13	59.68	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3	[more]

BLAST of CmaCh13G009530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08_CUCSA	1.2e-30	85.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1	[more]
A0A059AVC5_EUCGR	6.0e-25	73.49	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1	[more]
A0A0B0PPQ1_GOSAR	6.6e-24	78.95	Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1	[more]
D7T7D9_VITVI	1.9e-23	75.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g00370 PE=4 SV=...	[more]
M4FEE4_BRARP	2.5e-23	76.92	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of CmaCh13G009530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	8.2e-26	75.32	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]
AT1G65700.3	8.0e-13	47.57	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	5.5e-06	40.68	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CmaCh13G009530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067001\|ref\|XP_008437152.1\|	1.2e-31	89.02	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]	[more]
gi\|449439527\|ref\|XP_004137537.1\|	1.8e-30	85.37	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
gi\|700209127\|gb\|KGN64223.1\|	1.8e-30	85.37	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
gi\|702433948\|ref\|XP_010069536.1\|	8.6e-25	73.49	PREDICTED: coiled-coil domain-containing protein 12 [Eucalyptus grandis]	[more]
gi\|1021571667\|ref\|XP_016176966.1\|	7.3e-24	73.49	PREDICTED: coiled-coil domain-containing protein 12 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G009530.1	CmaCh13G009530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..71 score: 2.1
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 4..75 score: 2.
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 12..71 score: 3.02
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 284..326 score: 8.9
None	No IPR available	unknown	Coil	Coil	coord: 302..329 scor
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 10..71 score: 2.2
None	No IPR available	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 257..344 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G009530	Cucsa.122380	Cucumber (Gy14) v1	cgycmaB0317
CmaCh13G009530	Cla008371	Watermelon (97103) v1	cmawmB200
CmaCh13G009530	Csa1G043260	Cucumber (Chinese Long) v2	cmacuB217
CmaCh13G009530	MELO3C002181	Melon (DHL92) v3.5.1	cmameB193
CmaCh13G009530	ClCG01G014710	Watermelon (Charleston Gray)	cmawcgB179
CmaCh13G009530	CSPI01G07650	Wild cucumber (PI 183967)	cmacpiB218
CmaCh13G009530	CmoCh18G000840	Cucurbita moschata (Rifu)	cmacmoB224
CmaCh13G009530	CmoCh13G009890	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G009530	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	cmalsiB208
CmaCh13G009530	Cp4.1LG09g10790	Cucurbita pepo (Zucchini)	cmacpeB213
CmaCh13G009530	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cmacpeB234
CmaCh13G009530	MELO3C002181.2	Melon (DHL92) v3.6.1	cmamedB214
CmaCh13G009530	CsaV3_1G007610	Cucumber (Chinese Long) v3	cmacucB0248
CmaCh13G009530	Cla97C01G013720	Watermelon (97103) v2	cmawmbB207
CmaCh13G009530	Bhi08G001126	Wax gourd	cmawgoB0266
CmaCh13G009530	CsGy1G007500	Cucumber (Gy14) v2	cgybcmaB073
CmaCh13G009530	Carg06662	Silver-seed gourd	carcmaB0690
CmaCh13G009530	Carg04882	Silver-seed gourd	carcmaB0540

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G009530	CmaCh18G001070	Cucurbita maxima (Rimu)	cmacmaB217

The following block(s) are covering this gene:

None