Carg04882 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04882
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	coiled-coil domain-containing protein 12
Location	Cucurbita_argyrosperma_scaffold_028 : 1473963 .. 1475263 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAGTTTTTTCAGTTCTGCTTTTATATGTTCTTAAATTAACCATTGCTTGTACTTGTCGGATCTTTTGTATTAATTACATTCCACTGGAAAATTTGTAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAGGAATTTTGAATTAAAGCTCTGCCAACTTCATAAGTCTCTGTTTTATGTTCATTCTTTTACTCGCTTCATTTGGTATAGTAATTGGACATGGGAAATTTAATTTATTCGCTTTGTTTGTCTGGGAAGATATCTATCTCTAGTCAATTAGCATATATATAATATTGTTTTTATCTCCTAGTTCTATCTCGTGGTTCCATAAATATATATTTCATGTATTTTACAATACTCCACAAGTTTCTTATAAAAAAAATTTGAAGTCTATCAGTTGTGGATCTTTTCATTTAACAGTCATCCCTGCTGGGTAGTTAAAGTTGGGGGGATTTCTGGGTATCGAGGGAAGTTGTGGAGATTGGAGTAGAATAGGGCTAGTTTAAACTATAACCTTCCAGTCTTTAAAGGGAATTATTGAACCTAAGAAACTACAATCTTTAGGAGATGTAGGTTACTCTCATTACCGTATGCATTGGAAGTTACAAGAGTGATTATTGTGTGTATCATAAGATGGTAGAAAATGATATGAAGCTCCTAAAATTTAATAGTGGTTACAACTTAGAGCACCCCTTCTTACCTTTATGAACTTTATTTTCGTGCAATCTTTTGTAGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAGTATGCCGCCCAAGTTATGAGTTCTCCAGTATTACAGTCGCAATATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTTTTAATTTATCTATTGTGGCTCTCATGGTGTTCCTTGACTAACTATGCCCCATAGCATATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTGTACTTCATCTTATCTTCATTTTGAACCGTTTTCTTATTTTT

mRNA sequence

AGTAATCTTAGTATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGATAGTATGCCGCCCAAGTTATGAGTTCTCCAGTATTACAGTCGCAATATTCACTACTATTCCGACGGCTTTATGTCTCATATGGTCAGATTTTCTGTAACCTTTCTGATCATTCTTTGCCGCAAATCTTTTGCTTTTAATTTATCTATTGTGGCTCTCATGGTGTTCCTTGACTAACTATGCCCCATAGCATATCTCACACTGGATAGTGATTTGTGATTTGTACCTATGCTAAAAATTACTTTGTACTTCATCTTATCTTCATTTTGAACCGTTTTCTTATTTTT

Coding sequence (CDS)

ATGAAATTTCGGAACTATGTTCCTCATGATAAGGAGCTTCAGGAGGGAAAGCTTGTTCCACCTGTATTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCTCCAAAGAAACCAAACTGGGATCTTAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTAGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAACAAAAGCAGTCAGCTGAAGGAGACGATGACCAAAATATTACAGAATGA

Protein sequence

MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE

Homology

[Close]

BLAST of Carg04882 vs. NCBI nr
Match: XP_023520254.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023520255.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 60  MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 119

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Sbjct: 120 KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 156

[Close]

BLAST of Carg04882 vs. NCBI nr
Match: XP_022923663.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022923664.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 189.1 bits (479), Expect = 7.0e-45
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKLVPP LPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 60  MKFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 119

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE
Sbjct: 120 KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 156

[Close]

BLAST of Carg04882 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 3.5e-44
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 57  MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 116

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Sbjct: 117 KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 153

[Close]

BLAST of Carg04882 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 57  MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 116

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQE QKQSAEGDDDQN TE
Sbjct: 117 KLDKLERRTQKALYKLMEEQEXQKQSAEGDDDQNDTE 153

[Close]

BLAST of Carg04882 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 57  MKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 116

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQE QKQSAEGDDDQN TE
Sbjct: 117 KLDKLERRTQKALYKLMEEQEXQKQSAEGDDDQNDTE 153

[Close]

BLAST of Carg04882 vs. TAIR10
Match: AT3G05070.1 (mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-25
Identity = 60/92 (65.22%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVAT--EPPQLKEDPFVNIAPKKPNWDLRRDV 60
           MKFRNYVP  KELQ+GKL PP LPKFEDP+                   KKPNWDLRRDV
Sbjct: 47  MKFRNYVPQAKELQDGKLAPPELPKFEDPIVALXXXXXXXXXXXXXXXXKKPNWDLRRDV 106

Query: 61  QKKLDKLERRTQKALYKLMEEQEKQKQSAEGD 91
           QKKLDKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 107 QKKLDKLERRTQKAMHKLMEEQEKEREMAEAD 138

[Close]

BLAST of Carg04882 vs. Swiss-Prot
Match: sp|Q8R344|CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-10
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWD 60
           ++ RNYVP D++L+  + VP   P       K +   A   P ++E    N+AP+KP+WD
Sbjct: 57  LRLRNYVPEDEDLKR-RRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWD 116

Query: 61  LRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA 88
           L+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Sbjct: 117 LKRDVAKKLEKLEKRTQRAIAELIRERLKGQEDS 149

[Close]

BLAST of Carg04882 vs. Swiss-Prot
Match: sp|Q8WUD4|CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-10
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLP-------KFEDPVATEPPQLKEDPFVNIAPKKPNWD 60
           ++ RNYVP D++L++ + VP   P       K +   A   P ++E    N+AP+KP+WD
Sbjct: 57  LRLRNYVPEDEDLKK-RRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWD 116

Query: 61  LRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA 88
           L+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Sbjct: 117 LKRDVAKKLEKLKKRTQRAIAELIRERLKGQEDS 149

[Close]

BLAST of Carg04882 vs. TrEMBL
Match: tr|A0A1S3ATB1|A0A1S3ATB1_CUCME (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-42
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKL PPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 57  MKFRNYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQK 116

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 117 KLDKLERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Carg04882 vs. TrEMBL
Match: tr|A0A0A0LR08|A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.0e-41
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQK 60
           MKFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQK
Sbjct: 98  MKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQK 157

Query: 61  KLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KLDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 158 KLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of Carg04882 vs. TrEMBL
Match: tr|A0A2N9IPQ2|A0A2N9IPQ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54022 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.6e-35
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPV-ATEPPQLKEDPFVNIAPKKPNWDLRRDVQ 60
           MKFRNYVPHDK+LQEGK+ PPVLPKFEDPV A  PP  +EDPFVNIAPKKPNWDLRRDVQ
Sbjct: 59  MKFRNYVPHDKQLQEGKVSPPVLPKFEDPVAAAPPPSAEEDPFVNIAPKKPNWDLRRDVQ 118

Query: 61  KKLDKLERRTQKALYKLMEEQEKQKQSAEGD 91
           KKLDKLERRTQKALYKLMEEQEKQKQ AE D
Sbjct: 119 KKLDKLERRTQKALYKLMEEQEKQKQLAEED 149

[Close]

BLAST of Carg04882 vs. TrEMBL
Match: tr|A0A218VQ85|A0A218VQ85_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019988 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLK-EDPFVNIAPKKPNWDLRRDVQ 60
           MKFRNYVPHDK+LQEGK+ PPVLPKFEDP+A EPP L+ +DPFVNIAPKKPNWDLRRDVQ
Sbjct: 61  MKFRNYVPHDKQLQEGKVAPPVLPKFEDPLAAEPPALETKDPFVNIAPKKPNWDLRRDVQ 120

Query: 61  KKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 98
           KKLDKLERRTQKA+YK+MEEQE+QKQ AE D    + E
Sbjct: 121 KKLDKLERRTQKAMYKIMEEQERQKQMAEEDSVNGMQE 158

[Close]

BLAST of Carg04882 vs. TrEMBL
Match: tr|A0A2P4IY42|A0A2P4IY42_QUESU (Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_08742 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-34
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1   MKFRNYVPHDKELQEGKLVPPVLPKFEDPVATEP-PQLKEDPFVNIAPKKPNWDLRRDVQ 60
           MKFRNYVPHDK+LQEGK+ PPVLPKFEDP+A  P P  +EDPFVNIAPKKPNWDLRRDVQ
Sbjct: 132 MKFRNYVPHDKQLQEGKVSPPVLPKFEDPIAAAPLPSAEEDPFVNIAPKKPNWDLRRDVQ 191

Query: 61  KKLDKLERRTQKALYKLMEEQEKQKQSAEGD 91
           KKLDKLERRTQKALYKLMEEQEKQKQ  E D
Sbjct: 192 KKLDKLERRTQKALYKLMEEQEKQKQITEED 222

The following BLAST results are available for this feature:

BLAST of Carg04882 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520254.1	1.4e-45	100.00	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022923663.1	7.0e-45	98.97	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022923664...	[more]
XP_022994277.1	3.5e-44	97.94	coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_...	[more]
XP_022955111.1	1.3e-43	96.91	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112...	[more]
XP_023542240.1	1.3e-43	96.91	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]

BLAST of Carg04882 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	3.4e-25	65.22	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of Carg04882 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8R344\|CCD12_MOUSE	3.8e-10	40.43	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]
sp\|Q8WUD4\|CCD12_HUMAN	8.5e-10	39.36	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]

BLAST of Carg04882 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATB1\|A0A1S3ATB1_CUCME	2.8e-42	93.81	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
tr\|A0A0A0LR08\|A0A0A0LR08_CUCSA	4.0e-41	90.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1	[more]
tr\|A0A2N9IPQ2\|A0A2N9IPQ2_FAGSY	9.6e-35	87.91	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54022 PE=4 SV=1	[more]
tr\|A0A218VQ85\|A0A218VQ85_PUNGR	2.8e-34	79.59	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019988 PE=4 SV=1	[more]
tr\|A0A2P4IY42\|A0A2P4IY42_QUESU	3.7e-34	85.71	Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_0874...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04882-RA	Carg04882-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..97
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 1..79 e-value: 4.4E-25 score: 88.8
IPR013169	mRNA splicing factor, Cwf18	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 1..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04882	Cla008371	Watermelon (97103) v1	carwmB0385
Carg04882	Csa1G043260	Cucumber (Chinese Long) v2	carcuB0415
Carg04882	MELO3C002180	Melon (DHL92) v3.5.1	carmeB0393
Carg04882	ClCG01G014720	Watermelon (Charleston Gray)	carwcgB0380
Carg04882	CSPI01G07650	Wild cucumber (PI 183967)	carcpiB0418
Carg04882	Cucsa.122380	Cucumber (Gy14) v1	carcgyB0452
Carg04882	CmaCh18G001070	Cucurbita maxima (Rimu)	carcmaB0541
Carg04882	CmaCh13G009530	Cucurbita maxima (Rimu)	carcmaB0540
Carg04882	CmoCh18G000840	Cucurbita moschata (Rifu)	carcmoB0527
Carg04882	CmoCh13G009890	Cucurbita moschata (Rifu)	carcmoB0526
Carg04882	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04882	Cp4.1LG09g10880	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04882	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04882	CsGy1G007500	Cucumber (Gy14) v2	carcgybB0393
Carg04882	MELO3C002180.2	Melon (DHL92) v3.6.1	carmedB0397
Carg04882	CsaV3_1G007610	Cucumber (Chinese Long) v3	carcucB0418
Carg04882	Cla97C01G013730	Watermelon (97103) v2	carwmbB0406
Carg04882	Bhi08G001126	Wax gourd	carwgoB0473

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04882	Carg06662	Silver-seed gourd	carcarB411

The following block(s) are covering this gene:

None