Cp4.1LG09g10880 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g10880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Coiled-coil domain-containing 12
Location	Cp4.1LG09 : 9381034 .. 9385855 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGTATCAGAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTACGTTTTCTCTCGTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTGTAAGTATCTTGCGAGTATAATTGTTTCTCTCGCTTTTCCGCCTTCTTTGTGTTGCTCCTGCCGCTGTCTACTCTTCCTTCGCTTCCTTGTGATGAATTTTCGTCATCTATGGCTATCTCGAAGGTTAATTAGATGAAATATTGAGTGTTGACTTTGCAAATGACTTGTAGCTGTTATTCCTCTCGAGTTTTTCTGCAAGTATCTTGCGAGTATAATTGTTTCTCTTGCTTTTCCGCCTTCTTTGTGGTGCTCCTGCCGCTGTCTACTCTTTCTTTCGCTTCCTTGTGACGATTTTTCGTAAGCTATGGCTATCTCGAAGGTTAAATAGATGAAATATGACTTTGCAAATGACTTGTAATACCTTAGTCTTTCTTCAATTTCCATTTTGCGATTTCTTAGTCATACTTTCTTTATCGAGAACAATCTAGAGTGATTTTTAGTTCTTTTCTTATCAGATATTTTACGTACAATAGGCAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAATTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATAAAGAGAATGGCGCTGCCGCAGATACCGAAGAAACGTGAGTGTATATCGTTTTCTTCCACCAAAGATAAACTGCTGTACTAGAAGTTATTTTTTCTAGAAATTTTTTGTTTCAATTTCTCGAGTAAGTCGAATACTAGTAATGATTATATTGCTGAAATTTTGAAATGTTTTTCTTCTATTCGTGGATCACTTTACTTGTAAGCAGGTTTGTATAGTACAGGTAGCTTCAATTTGATTTCTCTGACTGTAATATCCTCTCTATCCTCCTTTGTTGTGCTTTGAAAGATCCAATCTATGATATCCTCTTCAAATTATAGATTCCTAAACTATGTTTCTACTCCTTTACGATCTATAGATAAAAATCTTCAAGAATACAGAAACGTGAATGGAATTGAGAAAGTTCATGCACAATAATCCATTTAGGCTACATCAGTCTACAGAAAAAGTTCTATTACTCATAGCTCCTTGAGACTGAGACTCCACAAAACAAATATTCCATAGAAAATAACACTGTGGAGTAGATGAAGAGGAGAAAATAGTAGATCTCATCATACTTACCCACTCTGAATCTCTGTCTCCTCATAGGAATGGCGATGTCCTTCTTCCTCTGCCTTTAACCACCCTCATTAATCTTTATGCTTATTGCCTGACCTTTTTACCTCCTATTTTAACCTCTATCACTCCCTTTCTCTTCCTCTTTCTTTAGCCGCCCCTTTTATCTGTGTCCATAGTTTGACTATCTCTTTTTTTTTTTTTTTTCGTTTATTTTATGGTGGGAGTCCATGCTGAATTTACATGCTGGCATAGTGAGCCAAGTTCCTCTATAATCTGGCCTGGGACATGTTACACAGACAACTTGCATGCTGTGTGATCAGTGTGCCAAGCTCTCTAGAACTTGATTTGGGACTTATTACAATTGACAGCCTTAGTAGTAGTATTTGCATTATTATGGCAGTGAAGACAAAGATTTCTTCCTTTCTTTAGTAAGTTTTGTTTTTATGTTTGCAGACTAGAGTCATAAACTGCCACAATAGGTCCTTTTAGAAACTAAGCTGCAAAGTTCATGTTAACATGATGCATGTGAAGCATGTTCATAAAAGTATCCGCCCATCAATGAGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTGTCCAGTTCTTCATAACATTTGTGCTTGTAGAGTTTAGGATGATGATAATGTGATGTGAATGATGGCGACATACGGCATACCTAAGCTTAGTTTATCTTTTAGGATACATTTGGTGGTTACCTTCAATATGATTTGTCCCTTGCAAGGGGAAAATGTGTTACTATATAAATGGCATTCTTTTGTACATTGAATATCTGTTTAGTTTGATGTCATTGCCAACTCATTTAAAAAATTGATGTTTTTTTTTTTTTTCTTGATTCACTATTACATTATCCTTTCTCAGTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTCCAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAATTTTGTCAGTTTGACTTATATGTGTGTGTGTGTGTGTGTGTTTAAAACTGGACTATTTTCGGATATTAATCTGTTAACTAAATTCCATCGGCTAAATTACAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAGATATATTGGATTTGAGGTCTATACGAACTTGATAAGTCACTTTTCTATTCTCGTTCTTTTACTTGCTTCATTTGGTAGTGTAACTGGACTTAACAAATTGAAATTTATTTGTTTGTTTGTCTGATATCTACAGTCAATTAGCATATAGATTAAAGAATTCTGGCATGAAATAAAATATATTGTTGGAGTTATTTTAATTCAGTAAGGTTAATTTAGAGTATTTGATCTGCAGACGCTTCTTGTAATTTTCTTTTTTGTATTTGGTCATCAGTTGTGGGTCTTATGATTTAAGAGTCTTCAATCTCAGTTTTGGCCTGAAGTTGGGGGGTTTCTAGGTATCGAGGGAAGTGGTGGTGCTTGGAGTAGAATGGGGCCAGTTTAAACCATAACCCTCTAATCTTGAACATTATATATACTGATTAACTCATGAAGATATTGAAAGCTGTAGCAAAGATTGTGACATCTTTTAGTTGGCCGGTAGCTTATCTATTTAATTATTTTCAAAAGAACATTATATCACAAATATAAGGTAAAGGATTTGAAACTAAATCTTTAATGGACATGTCTTATACACTTGATTATATTCAAATCGATGCAGGATACCCTTATTACAAGACTAATTATCATAATGAATCATAAAAATGGTAGAAAGTTATGTGGAACTCTGAAGTTACAGAATGTTTGAGCTCCGTGCTTGCTTGGCTTTATGAACTTTCTTCTTGTTCAATGTCTTGTAGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATAGTATGCCACACAAGTCCGATATGCTATGAAAAGTATATCATTGAAGAAAACTGGGCGTTATTTGGCTCATAGGGTCAGTTTTTCTGTGACCTTTTTTTATCATTCTTGGCTGCAAATCTTTAGTTTATCTATTGTTTGCTTATGTGGTGTCCATTTGACTAATTTACGCCCCTTGGTGTATCTCATACTGGATACTGATCTGTAACTTATCTACACTGCCTTTTAAGTTATAACTTTGTGTTTCACTTATTATTTATCAACATTATATGCTGTTTTTTGCACATTAACTTCGCATATGATTTCAGTCAGACATTTGCAAACGTTTCACGGTTCGTTGCATACGTTGTGTTGGGGCAGCAACCAATTTCCAGATGACTTCAGATGGAAATACAAGGTGCTTATATGATAATTGACTGTTTGATGAAGTTTGTCTATTTTCAGTTTTATTTTTAATTTTGAAACATGTTTTTGAAATCGGACGCACGTTTTATTTTATTTTTTCCTTCTTTCCAAAGGATGAGTTAAAAAATTAGGTTTATGCTATCAAAATATTACTTTCTTCTGGACACATTCTCTGTTTTCCTCCTTAACATATTTCCTTCTAAAATTTGTTTTTTTTTTTTTTTTCTTTTTCTTTTTCCCCTCACTTTTCTCTTTTTCTCACTTCAAAAATTTTCTTCACAGAATTTTCTTCTATTTAGAACTTTTATCAAACTTTTCTACTCTTGCTAGTTAATTTGTGTTCCTTCTTTATAAACTTTCTGACTATTCTTTGTTAATAAAATTTCTTACTTTTTCTCCCTCTCCAACTAAAAATTTCTTTATATATATATTGCTTCTAAAGAAAACATTATCAAATATGTTTTATGGTTTTTTTATATAGAGAAAACAAAGATTAAATTATTAGTTTAGTCCTAAACTTTTATGTTTATCTATTTGATCATATTACTTGTTGAATTTTGAGATTTGAGTTTCTAATTTTAAAAGGTGTTTGCTTGGCCATTTAAAACTTTCAATTTTAGGTCCTATTGGGTTTTGTATCAAGTTTTTTTTAGCTTTTCTTGATCTTATTCAAAATTTAGGCTCTTATGTGTAATAGACCAGAAAATGTTTAAATTTTTTAAATATATTAAAAATTTATTAGACACAAAACATGAATTTATTAAGTAAAAAATGGAAAAGGGGAAGTAAAAGACAGGACTTATGGATACACACAATTGAAGAATGACGAGCCTTCCCTTGGAATTACACACCGTTTTGAGCATCACGTCGGTTCAGTCCTGTATAAACGTAGTAATTATGTGCACAATAACTTATCTTTGATCTCCCTTTAATTGTTTAGAGGCAATTTGTCCTCTGTTTATATTCTCCTCATGGAATGAGGGATCCACTGCAGGAAGCTGGAATTCATCTGGCTTCAGGGCAAGGGCAAAATCG

mRNA sequence

TCAGTATCAGAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTACGTTTTCTCTCGTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTCTTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTATATTTTACGTACAATAGGCAATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAATTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATAAAGAGAATGGCGCTGCCGCAGATACCGAAGAAACTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTCCAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATAGTATGCCACACAAGTCCGATATGCTATGAAAAGTATATCATTGAAGAAAACTGGGCGTTATTTGGCTCATAGGTCAGACATTTGCAAACGTTTCACGGTTCGTTGCATACGTTGTGTTGGGGCAGCAACCAATTTCCAGATGACTTCAGATGGAAATACAAGGAAGCTGGAATTCATCTGGCTTCAGGGCAAGGGCAAAATCG

Coding sequence (CDS)

ATGGCTACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAATTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATAAAGAGAATGGCGCTGCCGCAGATACCGAAGAAACTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTCCAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGATACAGAGGGATAG

Protein sequence

MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTEG

Homology

[Close]

BLAST of Cp4.1LG09g10880 vs. Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-12
Identity = 51/142 (35.92%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFRNYVPHDK 67
           +E+ A  R+ERL+ALR   E     D +    + K+     +    + G++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDREDGEPQTKQLREEGEEVGKHRGLRLRNYVPEDE 70

Query: 68  ELQEGKL--APPVLP----KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKL 127
           +L+  ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 128 ERRTQKALYKLMEEQEKQKQSA 144
           E+RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 EKRTQRAIAELIRERLKGQEDS 149

[Close]

BLAST of Cp4.1LG09g10880 vs. Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 1


Query: 8   VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAA--------DTEETNLGMKF 67
           +E+ A  R+ERL+ALR          EKT G +DKE+G           +  E +  ++ 
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDKEDGEPKTKHLREEEEEGEKHRELRL 70

Query: 68  RNYVPHDKELQEGKL--APPVLP----KFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRD 127
           RNYVP D++L++ ++  A PV      K +   A   P ++E    N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 128 VQKKLDKLERRTQKALYKLMEEQEKQKQSA 144
           V KKL+KL++RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 VAKKLEKLKKRTQRAIAELIRERLKGQEDS 149

[Close]

BLAST of Cp4.1LG09g10880 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-65
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEEDSVEQVAAAR+ERL+ALRAAQELLN  DEK SGGEDKENGA  D++ETNL MKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 154
           LERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of Cp4.1LG09g10880 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-49
Identity = 110/147 (74.83%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEE+S+EQ AA+R+ERL+AL+AAQELLNAPDE +S  +  EN      EE N  MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPVA EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEG 146
           DKLERRTQKA++KLME+QE++KQ  EG
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEG 145

[Close]

BLAST of Cp4.1LG09g10880 vs. TrEMBL
Match: W9QTU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 110/153 (71.90%), Postives = 124/153 (81.05%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATE+DS++Q  AAR+ERL+AL+AAQ LLN PDE +   EDK+N      EETN  MKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHD+ LQEGK+APPVLPKFEDPVA  PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEGDDDQND 152
           DKLERRTQKA+YKLMEEQEKQK+ AE   D  D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQDAPD 153

[Close]

BLAST of Cp4.1LG09g10880 vs. TrEMBL
Match: A0A0D2UWP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-48
Identity = 109/147 (74.15%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEE+S+EQ AA+R+ERL+AL+AAQELLNAPDE +S  +  EN      EE N  MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPVA  PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAAPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEG 146
           DKLERRTQKA++KLME+QE++KQ  EG
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEG 145

[Close]

BLAST of Cp4.1LG09g10880 vs. TrEMBL
Match: A0A059AVC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.5e-48
Identity = 109/162 (67.28%), Postives = 127/162 (78.40%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDE--------KTSGGEDKENGAAADTEE 60
           M  E+DS+EQ  AAR+ERLRALRAAQELLNAP E        K+ G  + +     D +E
Sbjct: 1   MGEEDDSIEQAVAARRERLRALRAAQELLNAPSEDSAAQADGKSDGENENDENDEDDAQE 60

Query: 61  TNLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQL-KEDPFVNIAPKKPNWDLR 120
            N  MKFRNYVPHDK+LQEGK+APPVLPKFEDPVATEPP   K+DPF+NIAPKKPNWDLR
Sbjct: 61  ENPSMKFRNYVPHDKQLQEGKVAPPVLPKFEDPVATEPPPAEKKDPFINIAPKKPNWDLR 120

Query: 121 RDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 154
           RDVQKKLDKLERRTQKA+YK+++EQEKQK+ AE D +   +E
Sbjct: 121 RDVQKKLDKLERRTQKAMYKIVQEQEKQKEKAEEDGENGASE 162

[Close]

BLAST of Cp4.1LG09g10880 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 174.5 bits (441), Expect = 5.1e-44
Identity = 99/148 (66.89%), Postives = 114/148 (77.03%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MA+E++S+EQ AAAR+E L+ALRAAQEL           E KE+G     EE    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVP  KELQ+GKLAPP LPKFEDP+   PP +  KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEGD 147
           DKLERRTQKA++KLMEEQEK+++ AE D
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEAD 138

[Close]

BLAST of Cp4.1LG09g10880 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GEDKENGA ADT+ETNL MKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 154
           LERRTQKALYKLMEEQEKQKQ+AEGDDDQN  E
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Cp4.1LG09g10880 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.9e-65
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEEDSVEQVAAAR+ERL+ALRAAQELLN  DEK SGGEDKENGA  D++ETNL MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 154
           LERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of Cp4.1LG09g10880 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.9e-65
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEEDSVEQVAAAR+ERL+ALRAAQELLN  DEK SGGEDKENGA  D++ETNL MKFR
Sbjct: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161

Query: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 154
           LERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 194

[Close]

BLAST of Cp4.1LG09g10880 vs. NCBI nr
Match: gi|728847547|gb|KHG26990.1| (Coiled-coil domain-containing 12 [Gossypium arboreum])

HSP 1 Score: 202.6 bits (514), Expect = 5.0e-49
Identity = 110/147 (74.83%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATEE+S+EQ AA+R+ERL+AL+AAQELLNAPDE +S  +  EN      EE N  MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHDK+LQEGK+APPVLPKFEDPVA EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEG 146
           DKLERRTQKA++KLME+QE++KQ  EG
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEG 145

[Close]

BLAST of Cp4.1LG09g10880 vs. NCBI nr
Match: gi|703088497|ref|XP_010093549.1| (hypothetical protein L484_013982 [Morus notabilis])

HSP 1 Score: 199.9 bits (507), Expect = 3.2e-48
Identity = 110/153 (71.90%), Postives = 124/153 (81.05%), Query Frame = 1


Query: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADTEETNLGMKFR 60
           MATE+DS++Q  AAR+ERL+AL+AAQ LLN PDE +   EDK+N      EETN  MKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 61  NYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 120
           NYVPHD+ LQEGK+APPVLPKFEDPVA  PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 121 DKLERRTQKALYKLMEEQEKQKQSAEGDDDQND 152
           DKLERRTQKA+YKLMEEQEKQK+ AE   D  D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQDAPD 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g10880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD12_MOUSE	6.3e-12	35.92	Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2	[more]
CCD12_HUMAN	1.8e-11	36.67	Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1	[more]

BLAST of Cp4.1LG09g10880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08_CUCSA	2.0e-65	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1	[more]
A0A0B0PPQ1_GOSAR	3.5e-49	74.83	Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1	[more]
W9QTU0_9ROSA	2.2e-48	71.90	Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1	[more]
A0A0D2UWP4_GOSRA	2.2e-48	74.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1	[more]
A0A059AVC5_EUCGR	6.5e-48	67.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00657 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g10880 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	5.1e-44	66.89	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of Cp4.1LG09g10880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067001\|ref\|XP_008437152.1\|	1.5e-66	90.85	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]	[more]
gi\|449439527\|ref\|XP_004137537.1\|	2.9e-65	88.24	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
gi\|700209127\|gb\|KGN64223.1\|	2.9e-65	88.24	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
gi\|728847547\|gb\|KHG26990.1\|	5.0e-49	74.83	Coiled-coil domain-containing 12 [Gossypium arboreum]	[more]
gi\|703088497\|ref\|XP_010093549.1\|	3.2e-48	71.90	hypothetical protein L484_013982 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g10880.1	Cp4.1LG09g10880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 8..135 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 111..146 scor
None	No IPR available	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 1..153 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g10880	Cucsa.122380	Cucumber (Gy14) v1	cgycpeB0306
Cp4.1LG09g10880	CmaCh18G001070	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g10880	CmoCh13G009890	Cucurbita moschata (Rifu)	cmocpeB183
Cp4.1LG09g10880	CmoCh18G000840	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g10880	Cla008371	Watermelon (97103) v1	cpewmB038
Cp4.1LG09g10880	Csa1G043260	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g10880	MELO3C002180	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g10880	ClCG01G014720	Watermelon (Charleston Gray)	cpewcgB021
Cp4.1LG09g10880	CSPI01G07650	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g10880	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g10880	MELO3C002180.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g10880	CsaV3_1G007610	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g10880	Bhi08G001126	Wax gourd	cpewgoB0045
Cp4.1LG09g10880	CsGy1G007500	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g10880	Carg06662	Silver-seed gourd	carcpeB0694
Cp4.1LG09g10880	Carg04882	Silver-seed gourd	carcpeB0539

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g10880	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g10880	Cucurbita maxima (Rimu)	cmacpeB213