CsGy1G007500 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G007500
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	coiled-coil domain-containing protein 12
Location	Chr1 : 4819088 .. 4822650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATTATAATTTTAGAAATCTGAAAAAATAGATTTTAGTTTAGAAGAAAAAAACCCGACGAGGAACAAAATTTCATGAGCGGATCCGATTGAACTCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGGTATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCTGTTTTAACTATTTCTTTCTCATTCCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGCTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAAAGTTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTTCGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACGTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGAATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCTTCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTCTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTAAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGATATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGGCAATGGCATTTCTGGCTTGCAACTTTACATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAACTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACACATTAATTTGGCATATGTTCCACGGTTCATTCACTTCACTTTGTCTTGTGTTGGGGCAGTTCGGATGACGTCGGAACTGCAAGCATATGTGCAAGTAAAAGGTGATTATATGATTACTATTACCTTTTACGCTTTTGATTTTTCCATTTTTGGATGCTGTTTGAATGAGGTTTCAGTTTTCAGTATTATATTGAAAATTTATTGTAAATGTCAAAACTTCTAAAAAAGTATTTACAAAGTTTCCAATTATATTTACTATCTACTATTTAATATTTTGAAAAGTATTTTATAAAGTAGTACGCAAGGGTTTT

mRNA sequence

ATTAAATTATAATTTTAGAAATCTGAAAAAATAGATTTTAGTTTAGAAGAAAAAAACCCGACGAGGAACAAAATTTCATGAGCGGATCCGATTGAACTCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGATATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGGCAATGGCATTTCTGGCTTGCAACTTTACATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAACTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACACATTAATTTGGCATATGTTCCACGGTTCATTCACTTCACTTTGTCTTGTGTTGGGGCAGTTCGGATGACGTCGGAACTGCAAGCATATGTGCAAGTAAAAGGTGATTATATGATTACTATTACCTTTTACGCTTTTGATTTTTCCATTTTTGGATGCTGTTTGAATGAGGTTTCAGTTTTCAGTATTATATTGAAAATTTATTGTAAATGTCAAAACTTCTAAAAAAGTATTTACAAAGTTTCCAATTATATTTACTATCTACTATTTAATATTTTGAAAAGTATTTTATAAAGTAGTACGCAAGGGTTTT

Coding sequence (CDS)

ATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Protein sequence

MGLLRSGPYIYISFQREMRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE

Homology

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BLAST of CsGy1G007500 vs. NCBI nr
Match: KGN64223.1 (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 1.8e-98
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 18  MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 77
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 78  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 137
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 138 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 197
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 198 KQAAEGDNDENGAE 212
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_004137537.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 2.4e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_008437152.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_023520254.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023520255.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 138/156 (88.46%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGAT---EDSDETNLNM 118
           MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT   ED +ETNL+M
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEDPEETNLSM 60

Query: 119 KFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 178
           KFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKK
Sbjct: 61  KFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120

Query: 179 LDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           LDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N  E
Sbjct: 121 LDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNITE 156

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_022155130.1 (coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia])

HSP 1 Score: 254.6 bits (649), Expect = 2.9e-64
Identity = 133/153 (86.93%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           LERRTQKAL+KLM+EQEKQK++AEGD+ +NG E
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTE 153

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BLAST of CsGy1G007500 vs. TAIR10
Match: AT3G05070.1 (mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 145.2 bits (365), Expect = 4.6e-35
Identity = 89/150 (59.33%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTS--EPPQLKEDPFVNIAPKKPNWDLRRDVQKKL 178
           NYVP  KELQ+GKLAPP LPKFEDP+ +                 KKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALXXXXXXXXXXXXXXXXKKPNWDLRRDVQKKL 120

Query: 179 DKLERRTQKALFKLMEEQEKQKQAAEGDND 207
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

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BLAST of CsGy1G007500 vs. Swiss-Prot
Match: sp|Q8WUD4|CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-12
Identity = 52/140 (37.14%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 66  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 125
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 126 ELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKL 185
           +L++ ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 186 ERRTQKALFKLMEEQEKQKQ 200
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of CsGy1G007500 vs. Swiss-Prot
Match: sp|Q8R344|CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 54/142 (38.03%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 66  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET--NLNMKFRNYVPH 125
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 126 DKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLD 185
           D++L+  ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 186 KLERRTQKALFKLMEEQEKQKQ 200
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of CsGy1G007500 vs. TrEMBL
Match: tr|A0A0A0LR08|A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.2e-98
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 18  MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 77
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 78  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 137
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 138 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 197
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 198 KQAAEGDNDENGAE 212
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]

BLAST of CsGy1G007500 vs. TrEMBL
Match: tr|A0A1S3ATB1|A0A1S3ATB1_CUCME (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.3e-68
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsGy1G007500 vs. TrEMBL
Match: tr|A0A2P4IY42|A0A2P4IY42_QUESU (Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_08742 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 116/173 (67.05%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 46  LVIFVSGILRTK------AMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGED 105
           L++   G L+T+       MA EEDS+EQ AAAR+ERL+AL+AAQELLN  DE +   E 
Sbjct: 57  LILGARGTLKTQRFSTGALMAAEEDSIEQAAAARRERLRALKAAQELLNTPDEDSGQVEY 116

Query: 106 KENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEP-PQLKEDPFVN 165
           K N     ++E NLNMKFRNYVPHDK+LQEGK++PPVLPKFEDP+ + P P  +EDPFVN
Sbjct: 117 KTNDENGTNEENNLNMKFRNYVPHDKQLQEGKVSPPVLPKFEDPIAAAPLPSAEEDPFVN 176

Query: 166 IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 212
           IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEKQKQ  E D    GAE
Sbjct: 177 IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQITEEDGG-TGAE 228

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BLAST of CsGy1G007500 vs. TrEMBL
Match: tr|A0A0B0PPQ1|A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum OX=29729 GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.4e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 178
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 179 DKLERRTQKALFKLMEEQEKQKQAAEGDN 206
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

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BLAST of CsGy1G007500 vs. TrEMBL
Match: tr|A0A1U8PAZ5|A0A1U8PAZ5_GOSHI (coiled-coil domain-containing protein 12-like OS=Gossypium hirsutum OX=3635 GN=LOC107957362 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.7e-48
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 178
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 179 DKLERRTQKALFKLMEEQEKQKQAAEGDN 206
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

The following BLAST results are available for this feature:

BLAST of CsGy1G007500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64223.1	1.8e-98	100.00	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
XP_004137537.1	2.4e-74	100.00	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
XP_008437152.1	2.0e-68	93.46	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160...	[more]
XP_023520254.1	4.5e-65	88.46	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022155130.1	2.9e-64	86.93	coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]	[more]

BLAST of CsGy1G007500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	4.6e-35	59.33	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of CsGy1G007500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8WUD4\|CCD12_HUMAN	2.3e-12	37.14	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
sp\|Q8R344\|CCD12_MOUSE	1.5e-11	38.03	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]

BLAST of CsGy1G007500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR08\|A0A0A0LR08_CUCSA	1.2e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1	[more]
tr\|A0A1S3ATB1\|A0A1S3ATB1_CUCME	1.3e-68	93.46	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
tr\|A0A2P4IY42\|A0A2P4IY42_QUESU	1.1e-48	67.05	Coiled-coil domain-containing protein 12 OS=Quercus suber OX=58331 GN=CFP56_0874...	[more]
tr\|A0A0B0PPQ1\|A0A0B0PPQ1_GOSAR	4.4e-48	73.15	Coiled-coil domain-containing 12 OS=Gossypium arboreum OX=29729 GN=F383_05197 PE...	[more]
tr\|A0A1U8PAZ5\|A0A1U8PAZ5_GOSHI	5.7e-48	73.15	coiled-coil domain-containing protein 12-like OS=Gossypium hirsutum OX=3635 GN=L...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007500.1	CsGy1G007500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	COILS	Coil	Coil	coord: 176..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..205
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 66..193 e-value: 4.3E-32 score: 111.5
IPR013169	mRNA splicing factor, Cwf18	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 59..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G007500	Cla008371	Watermelon (97103) v1	cgybwmB042
CsGy1G007500	Csa1G043260	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G007500	MELO3C002180	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G007500	ClCG01G014720	Watermelon (Charleston Gray)	cgybwcgB020
CsGy1G007500	CSPI01G07650	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G007500	CmaCh13G009530	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G007500	CmaCh18G001070	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G007500	CmoCh13G009890	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G007500	CmoCh18G000840	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G007500	Lsi02G002830	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G007500	Cp4.1LG20g01830	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G007500	Cp4.1LG09g10880	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G007500	MELO3C002180.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G007500	CsaV3_1G007610	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G007500	Cla97C01G013730	Watermelon (97103) v2	cgybwmbB010
CsGy1G007500	Bhi08G001126	Wax gourd	cgybwgoB025
CsGy1G007500	Carg04882	Silver-seed gourd	carcgybB0393
CsGy1G007500	Carg06662	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None