Csa1G043260.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G043260.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Coiled-coil domain-containing protein 12; contains IPR013169 (mRNA splicing factor, Cwf18)
Location	Chr1 : 4828196 .. 4831417 (-)
Sequence length	585

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGGTATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCTGTTTTAACTATTTCTTTCTCATTCCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGCTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAAAGTTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTTCGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACGTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGAATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCTTCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTCTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTAAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

mRNA sequence

ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Coding sequence (CDS)

ATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Protein sequence

MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE*

Homology

[Close]

BLAST of Csa1G043260.1 vs. Swiss-Prot
Match: CCD12_HUMAN (Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 1


Query: 49  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 108
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 109 ELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLDKL 168
           +L++ ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 169 ERRTQKALFKLMEEQEKQKQ 183
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of Csa1G043260.1 vs. Swiss-Prot
Match: CCD12_MOUSE (Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 1


Query: 49  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN--MKFRNYVPH 108
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 109 DKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFV------NIAPKKPNWDLRRDVQKKLD 168
           D++L+  ++        E+ V  +    K +P +      N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 169 KLERRTQKALFKLMEEQEKQKQ 183
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

[Close]

BLAST of Csa1G043260.1 vs. Swiss-Prot
Match: CWF18_SCHPO (Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf18 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 39/137 (28.47%), Postives = 65/137 (47.45%), Query Frame = 1


Query: 48  SVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNM-KFRNYVPH 107
           S+++VA +RK+RL  LR  ++L N                T DS E   N+ + RNY P 
Sbjct: 3   SLDEVAESRKQRLAELRKIKQLENK---------------TRDSQEVQKNVIEHRNYDPE 62

Query: 108 DKELQEGKLAPPVLPKFEDPVTSEPPQ-------------LKEDPFVNIAPKKPNWDLRR 167
            +  + G + PP + +  + ++ E  +             ++E   V + PKKP WDL R
Sbjct: 63  VQAPKMGFVEPPNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLER 122

Query: 168 DVQKKLDKLERRTQKAL 171
           D+++++  LE + Q A+
Sbjct: 123 DLKERMRSLETQNQNAI 124

[Close]

BLAST of Csa1G043260.1 vs. TrEMBL
Match: A0A0A0LR08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-105
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 181 KQAAEGDNDENGAE 195
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]

BLAST of Csa1G043260.1 vs. TrEMBL
Match: A0A0B0PPQ1_GOSAR (Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.7e-54
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of Csa1G043260.1 vs. TrEMBL
Match: W9QTU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP  + +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSEKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA++KLMEEQEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEEQEKQKELAEDAQD 150

[Close]

BLAST of Csa1G043260.1 vs. TrEMBL
Match: A0A0D2UWP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.0e-53
Identity = 108/149 (72.48%), Postives = 127/149 (85.23%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QAAENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV + PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAAPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of Csa1G043260.1 vs. TrEMBL
Match: W9REY7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.5e-52
Identity = 106/150 (70.67%), Postives = 122/150 (81.33%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATE+DS++Q  AAR+ERLKAL+AAQ LLN  DE +   EDK+N   +  +ETN NMKFR
Sbjct: 1   MATEDDSIDQAVAARRERLKALKAAQGLLNTPDEDSVQVEDKKNNDNDSREETNPNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHD+ LQEGK+APPVLPKFEDPV + PP    +EDPFVNIAPKKPNWDLRRDVQKK 
Sbjct: 61  NYVPHDEHLQEGKVAPPVLPKFEDPVAAMPPPSGKEEDPFVNIAPKKPNWDLRRDVQKKF 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA++KLME QEKQK+ AE   D
Sbjct: 121 DKLERRTQKAIYKLMEAQEKQKELAEDAPD 150

[Close]

BLAST of Csa1G043260.1 vs. TAIR10
Match: AT3G05070.1 (AT3G05070.1 mRNA splicing factor, Cwf18 (InterPro:IPR013169))

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-49
Identity = 101/150 (67.33%), Postives = 114/150 (76.00%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQL--KEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVP  KELQ+GKLAPP LPKFEDP+ + PP +  KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDND 190
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

[Close]

BLAST of Csa1G043260.1 vs. NCBI nr
Match: gi|700209127|gb|KGN64223.1| (hypothetical protein Csa_1G043260 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.1e-105
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1


Query: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 181 KQAAEGDNDENGAE 195
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]

BLAST of Csa1G043260.1 vs. NCBI nr
Match: gi|449439527|ref|XP_004137537.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 8.2e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 195
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

[Close]

BLAST of Csa1G043260.1 vs. NCBI nr
Match: gi|659067001|ref|XP_008437152.1| (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 6.7e-75
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 161
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 162 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 195
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of Csa1G043260.1 vs. NCBI nr
Match: gi|728847547|gb|KHG26990.1| (Coiled-coil domain-containing 12 [Gossypium arboreum])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 42  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 101
           MATEE+S+EQ AA+R+ERLKAL+AAQELLN  DE +S  +  EN   + ++E N +MKFR
Sbjct: 1   MATEEESIEQAAASRRERLKALKAAQELLNAPDEDSS--QASENQTDDTNEENNPSMKFR 60

Query: 102 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 161
           NYVPHDK+LQEGK+APPVLPKFEDPV +EPP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPHDKQLQEGKVAPPVLPKFEDPVAAEPPASEEKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 162 DKLERRTQKALFKLMEEQEKQKQAAEGDN 189
           DKLERRTQKA+FKLME+QE++KQ  EG N
Sbjct: 121 DKLERRTQKAIFKLMEQQEQEKQLDEGGN 147

[Close]

BLAST of Csa1G043260.1 vs. NCBI nr
Match: gi|719963148|ref|XP_010248821.1| (PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 117/160 (73.12%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 40  KAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETN---- 99
           +AM TEEDS+EQ AAAR+ERLKALRAAQ+LLN  DE ++  EDK     ED+DETN    
Sbjct: 6   EAMTTEEDSIEQAAAARRERLKALRAAQDLLNTPDEDSTQKEDKPE--EEDADETNENKT 65

Query: 100 LNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRR 159
           LNMKFRNY+PHDK+LQEGKLAPPVLPKFEDPV +EPP  Q  EDPFVNIAPKKPNWDLRR
Sbjct: 66  LNMKFRNYLPHDKQLQEGKLAPPVLPKFEDPVATEPPPSQKTEDPFVNIAPKKPNWDLRR 125

Query: 160 DVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGA 194
           DVQK+L+KLERRTQKA+F+LMEE ++QKQ AE    ENGA
Sbjct: 126 DVQKRLEKLERRTQKAIFQLMEE-DRQKQEAE----ENGA 158

The following BLAST results are available for this feature:

BLAST of Csa1G043260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCD12_HUMAN	1.3e-17	35.71	Coiled-coil domain-containing protein 12 OS=Homo sapiens GN=CCDC12 PE=1 SV=1	[more]
CCD12_MOUSE	1.1e-16	36.62	Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2	[more]
CWF18_SCHPO	3.5e-07	28.47	Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Csa1G043260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08_CUCSA	1.5e-105	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043260 PE=4 SV=1	[more]
A0A0B0PPQ1_GOSAR	7.7e-54	73.15	Coiled-coil domain-containing 12 OS=Gossypium arboreum GN=F383_05197 PE=4 SV=1	[more]
W9QTU0_9ROSA	1.3e-53	71.33	Uncharacterized protein OS=Morus notabilis GN=L484_013982 PE=4 SV=1	[more]
A0A0D2UWP4_GOSRA	5.0e-53	72.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G312100 PE=4 SV=1	[more]
W9REY7_9ROSA	2.5e-52	70.67	Uncharacterized protein OS=Morus notabilis GN=L484_005414 PE=4 SV=1	[more]

BLAST of Csa1G043260.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05070.1	2.3e-49	67.33	mRNA splicing factor, Cwf18 (InterPro:IPR013169)	[more]

BLAST of Csa1G043260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209127\|gb\|KGN64223.1\|	2.1e-105	100.00	hypothetical protein Csa_1G043260 [Cucumis sativus]	[more]
gi\|449439527\|ref\|XP_004137537.1\|	8.2e-81	100.00	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis sativus]	[more]
gi\|659067001\|ref\|XP_008437152.1\|	6.7e-75	93.46	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo]	[more]
gi\|728847547\|gb\|KHG26990.1\|	1.1e-53	73.15	Coiled-coil domain-containing 12 [Gossypium arboreum]	[more]
gi\|719963148\|ref\|XP_010248821.1\|	1.1e-53	73.13	PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Nelumbo nucifera...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013169	mRNA_splic_Cwf18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G043260	Csa1G043260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G043260.1	Csa1G043260.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G043260.1.cds5	Csa1G043260.1.cds5	CDS
Csa1G043260.1.cds4	Csa1G043260.1.cds4	CDS
Csa1G043260.1.cds3	Csa1G043260.1.cds3	CDS
Csa1G043260.1.cds2	Csa1G043260.1.cds2	CDS
Csa1G043260.1.cds1	Csa1G043260.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013169	mRNA splicing factor, Cwf18	PFAM	PF08315	cwf18	coord: 49..176 score: 4.5
None	No IPR available	unknown	Coil	Coil	coord: 159..194 score: -coord: 52..72 scor
None	No IPR available	PANTHER	PTHR31551	FAMILY NOT NAMED	coord: 26..194 score: 8.3
None	No IPR available	PANTHER	PTHR31551:SF1	COILED-COIL DOMAIN-CONTAINING PROTEIN 12	coord: 26..194 score: 8.3