Csa1G031860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G031860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nascent polypeptide-associated complex subunit beta; contains IPR002715 (Nascent polypeptide-associated complex NAC domain)
Location	Chr1 : 3395268 .. 3397757 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGCGCCGTCCGGGAGTTTCGCTTTCTTCCGCGACCCTCAGTCTTATCCCCTAACTCCAAAACCCTAGCCCAAAGGTAATTCACTCCTTCCTCTTCGCTCTTCATCTCTTTCTATTCCTCGTCTTAAATCTGTTCTCCCCTTTGGTTCTTCGATTCTTCTTTTCTTGGACTCTTTTATTCTTTCCTCATGGTTGGCCTTGTAAGTTTAGACGATGTTTTTATAGATTGGTTTGTCCTGTTTCTCTATCTATTCGCATGCTAGGGTTTTCTTTTTGTTTTCTATTGTGCTCTACTTCTGCAAGGTTGTGTTCTTTTTTTCTTCTTCATTCGGGTCCCTTTTCTTAACCGATATTAAATTAATGCAAATTTGTTTGGGCTTCTAATTGGGAAGCCTTTTGGAATATCTCGACATTTTGATTGCTGCATTTCATTTTGGGTATATTTCTATGATTGAAGGATGTGGGTCTGTTCACTGCATGCTTATTACTTATGCAGCTATGCTTATTGAGTCTCAGTACGGTGGGTTTGTTTGTTTGTGCAATCTGTTTCCGGATTCATAATTTTTGAGCAGTAGATGAAAAATGATATTTGTAAAATTCCTTGAGTGTTGGTGGGTATCTGCTCCTGCTATTTGCTTTTGGATTTTACTTTTATTATATCTGGATTATTCGAAATGTTCTGTTCTTGTTATAACTTATACCCGAAGATGTGTTCCTCCCTGCATCCAGCTTTGTGGGTTACTTATGATGGACATGATTTAATTCTGTTTGGTGTTGTGCAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGGTAATTTGTAATATTTATTGCAACTCAGTTCTTGTCCATTCTATTGTTGATCATGGAAGGAGATGGCATGGATAACCTTCAAATTTGATGGATCATAAGAACTTTACAAAATTTCAACTTTGCAATGTGATAAGAAATTATGTGTCCTTGCTAATTTAAATTTATTTTTTACAAATACTAACTAAAATAGAAATAGTAGTAGGAATCTATTTTAAGCAATAAGTTATACCAAACTTCCATCTCAGTGTTTTTCTCTTACCTTGCTGATCTTTACATGATGACTTTTTAAAATTTAAAGTTTTTAAGTTTTACACAAGGTTATGCAATTATATCATCATCTTAGTTACCTTATGGTAACTGGCACTTGGCAAGTCTTCTTGTGTATTGTACTTGTTTATTTGTTTTTCATGTCATAATCTTTCTATTATCTCTCCAATGAAATTCGCTACAGACATTACCTTTATTCCATTTGTTGAATTCTTATTTTCAAACAATTGCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGGTAACTTTTCTTAGACAATGTATTGTACTTGATTTTTATTGGTTTACATTCTTGGATAGCTCTTAACTAATTTTGTAAAAAAAATAATTCTGTCCAGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAGTATGTATCTCTGCACCATGTTGTAAATCTTATAACACGATTGTCTTCTTTCCATTGCTTGAATATAATTTGACATACTGGACAACCATCGAAGGTCTTTGGGAGTAGTTATATACTTCTTTGAGAGAATGTTTTCTTGTTTTGGGCAATTGGATCGTGGCTATAGAAAAATAATGTTCTTCTATTTGTTTAAATTGTGAGATCTTGTTGGTTTTAAGTGGATTTTATTAGTTTTCATTGTAACTATTCATGGAACCTGCTATTCTTACCAACCTTCAATGGATTACCGTTAGAAATCATCTGGTTGTCTTTCATTCTAATTTTTATTTTGTTATTTCGAAATTCTAATTATTTGTACGTTTCCCAACTTCAGAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTACGTTAGTTATCTCTCGAGTTATGTTTTATTGTTAGGAGCATTCCGTTGGTTTGAACTTCAAAATAATGCTTCTTGTTCTACTATCCTCAGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAGATAGATCCTTTTGAAAGAGAGGAGTGTTGTTTTTATGCCGTTTTATACTTTCCTAGAGTTGCTTCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGAGATGAGGATCGGTACTTGTGTGTTT

mRNA sequence

ATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAG

Coding sequence (CDS)

ATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAG

Protein sequence

MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS*

Homology

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BLAST of Csa1G031860 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.4e-67
Identity = 129/157 (82.17%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 125 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 160
           +Q PGAG  P   QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

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BLAST of Csa1G031860 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 125/157 (79.62%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 125 QQVPGAGGDPKNA--QEEDDDVPELVEGETFEAPAEE 160
           +Q  G G        +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Csa1G031860 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 90/157 (57.32%), Postives = 116/157 (73.89%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 65  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 124
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 125 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 160
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Csa1G031860 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 90/157 (57.32%), Postives = 116/157 (73.89%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 65  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 124
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 125 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 160
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Csa1G031860 vs. Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 86/147 (58.50%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 65  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 124
           KDD  VI FNNPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 125 KQQV-PGAGGDPKNAQEEDDDVPELVE 150
            +QV       P++  EEDDDVP+LVE
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVE 147

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BLAST of Csa1G031860 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60
           MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE
Sbjct: 1   MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60

Query: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120
           VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA
Sbjct: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120

Query: 121 EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Csa1G031860 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-67
Identity = 133/163 (81.60%), Postives = 146/163 (89.57%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           MD  +L+K+A AVRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 125 QQVPGAGGD----PKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           +Q PG G        N +++DDDVP+LVEG+TFEA AEE ++S
Sbjct: 197 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Csa1G031860 vs. TrEMBL
Match: A0A061F327_THECC (Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_024222 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-66
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M+ E+L K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 125 QQVPGAGGDPKNAQEE-DDDVPELVEGETFEAPAEENRSS 164
           +QVP AG +    QEE DDDVP+LV GETFEA AEE +++
Sbjct: 121 KQVPTAGAEATATQEEDDDDVPQLVGGETFEAAAEEGQAA 160

[Close]

BLAST of Csa1G031860 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-66
Identity = 132/160 (82.50%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++E+L K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 125 QQVPGAGGDPKNAQEEDDD-VPELVEGETFEAPAEENRSS 164
           +Q PGAG     AQ++DDD VP+LV G+TFEA AEE  ++
Sbjct: 121 KQAPGAGAGAAAAQDDDDDEVPDLVAGQTFEAAAEEGHTA 160

[Close]

BLAST of Csa1G031860 vs. TrEMBL
Match: A0A059A4Q1_EUCGR (Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_K02308 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-66
Identity = 135/162 (83.33%), Postives = 147/162 (90.74%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++ERL K+A +VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 73  MNRERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 132

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 133 KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 192

Query: 125 QQVPGA--GGDPKNAQEEDDD-VPELVEGETFEAPAEENRSS 164
           +QVPGA  G      Q++DDD VPELV GETFEA AEE +++
Sbjct: 193 KQVPGAATGSGATGMQDDDDDEVPELVPGETFEAAAEEGQAT 234

[Close]

BLAST of Csa1G031860 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 254.6 bits (649), Expect = 4.1e-68
Identity = 129/157 (82.17%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 125 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 160
           +Q PGAG  P   QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Csa1G031860 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 240.4 bits (612), Expect = 8.1e-64
Identity = 125/157 (79.62%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 125 QQVPGAGGDPKNA--QEEDDDVPELVEGETFEAPAEE 160
           +Q  G G        +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Csa1G031860 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.6e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60
           MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE
Sbjct: 1   MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60

Query: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120
           VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA
Sbjct: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120

Query: 121 EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Csa1G031860 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 8.7e-84
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 1


Query: 1   MVGLMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60
           MVGLMDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE
Sbjct: 1   MVGLMDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEE 60

Query: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120
           VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA
Sbjct: 61  VNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLA 120

Query: 121 EQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           EQFKQQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 EQFKQQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Csa1G031860 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 7.3e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Csa1G031860 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Csa1G031860 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 134/165 (81.21%), Postives = 147/165 (89.09%), Query Frame = 1


Query: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64
           MD  +L+K+A AVRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 125 QQVPGAGGD------PKNAQEEDDDVPELVEGETFEAPAEENRSS 164
           +Q PGAG          N +++DDDVP+LVEG+TFEA AEE ++S
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

The following BLAST results are available for this feature:

BLAST of Csa1G031860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	7.4e-67	82.17	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	1.4e-62	79.62	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_XENLA	2.8e-42	57.32	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENTR	2.8e-42	57.32	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_HUMAN	1.1e-41	58.50	Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1	[more]

BLAST of Csa1G031860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	3.2e-85	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0A0LTU8_CUCSA	1.3e-67	81.60	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A061F327_THECC	1.5e-66	83.75	Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_02...	[more]
D7TXR6_VITVI	1.9e-66	82.50	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
A0A059A4Q1_EUCGR	2.5e-66	83.33	Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUG...	[more]

BLAST of Csa1G031860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	4.1e-68	82.17	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	8.1e-64	79.62	basic transcription factor 3	[more]

BLAST of Csa1G031860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439237\|ref\|XP_004137393.1\|	4.6e-85	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|659066313\|ref\|XP_008438287.1\|	8.7e-84	98.77	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|449439239\|ref\|XP_004137394.1\|	7.3e-83	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|659066315\|ref\|XP_008438373.1\|	1.4e-81	98.74	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|659066946\|ref\|XP_008467234.1\|	1.1e-67	81.21	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU102516	cucumber EST collection version 3.0	transcribed_cluster
CU103051	cucumber EST collection version 3.0	transcribed_cluster
CU108358	cucumber EST collection version 3.0	transcribed_cluster
CU120663	cucumber EST collection version 3.0	transcribed_cluster
CU140441	cucumber EST collection version 3.0	transcribed_cluster
CU153239	cucumber EST collection version 3.0	transcribed_cluster
CU154687	cucumber EST collection version 3.0	transcribed_cluster
CU168149	cucumber EST collection version 3.0	transcribed_cluster
CU173488	cucumber EST collection version 3.0	transcribed_cluster
CU175816	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G031860.2	Csa1G031860.2	mRNA
Csa1G031860.1	Csa1G031860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU153239	CU153239	transcribed_cluster
CU120663	CU120663	transcribed_cluster
CU108358	CU108358	transcribed_cluster
CU140441	CU140441	transcribed_cluster
CU103051	CU103051	transcribed_cluster
CU175816	CU175816	transcribed_cluster
CU102516	CU102516	transcribed_cluster
CU154687	CU154687	transcribed_cluster
CU168149	CU168149	transcribed_cluster
CU173488	CU173488	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 score: 1.3
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 score: 1.3
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 16
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..155 score: 7.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G031860	Cla018640	Watermelon (97103) v1	cuwmB062
Csa1G031860	MELO3C001952	Melon (DHL92) v3.5.1	cumeB027
Csa1G031860	ClCG04G012560	Watermelon (Charleston Gray)	cuwcgB057
Csa1G031860	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G031860	MELO3C001952.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G031860	Cla97C04G079550	Watermelon (97103) v2	cuwmbB054
Csa1G031860	Bhi08G001617	Wax gourd	cuwgoB034
Csa1G031860	CSPI01G05240	Wild cucumber (PI 183967)	cpicuB000
Csa1G031860	Cucsa.112440	Cucumber (Gy14) v1	cgycuB137
Csa1G031860	CmaCh01G007630	Cucurbita maxima (Rimu)	cmacuB428
Csa1G031860	CmaCh13G011080	Cucurbita maxima (Rimu)	cmacuB206
Csa1G031860	CmoCh01G007980	Cucurbita moschata (Rifu)	cmocuB417
Csa1G031860	Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cpecuB517
Csa1G031860	Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cpecuB533
Csa1G031860	CsGy1G005010	Cucumber (Gy14) v2	cgybcuB001
Csa1G031860	Carg06975	Silver-seed gourd	carcuB0549
Csa1G031860	Carg04730	Silver-seed gourd	carcuB0417

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G031860	Cucurbita moschata (Rifu)	cmocuB191