Cp4.1LG02g10110 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g10110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cp4.1LG02 : 9943808 .. 9945396 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGGTACAATGAGAAGGTAATTCTGTAATTTTATTGCAATTTTGCTCGTTTGTTCTGTTGCTGCAACGATTTCAGCCTTGATAAGTTGCAATACTGATAACACCATCTTGGTTACCTTGTGTTCTGTTGCTGCAACGATTTCAGCCTTGATAAGTTGCAATACTGATAACACCATCTTGGTTACCTTTTGTTCTGTTGCTGCAACGATTTCAGCCTTGATAAGTTGCAATACTGATAACACCATCTTGGTTACCTTGTGTTCTGTTGCTGCAACGATTTCAGCCTTGATAAGTTGCAATACTGATAACACCATCTTGGTTACCTTGTGTTAACTTGCACTTGATAAGTTGTTTCTTGTCATTCATTTCCCACTGTCTTGTATTTGTCATAAAATATATAATTATAACTGTCTTAAGCTCGTAATTTTTAAAAATGAAATTCATTTCAAGACGTTCTCTTTTTGTTCCATCAGTTGAATTTTTATTTTCAATCACATTCTCTTGATAATAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTTGTTATCCAATTCGTCAACCCCAAGGGTAAATTCTTATACAATTTTTGTACTTCATCCTTGTTGCGCTACATTCTTTGATGACTCTTAACGTTACCTTTTAACTTTTTTCTTGTCCAGTTCAAGCATCTATTGCTGCAAACACGTGGGTTGTCAGTGGTTCTCCTCAAATAAAGAGTACGTATCTTTGTTAAACCATGTTGTAAATCTAGTATGGTGACTGGTGCAGATTGTTTTCTTTCCAGTGCTTGAATATAATAAATTCATATACTGGACATCCTTTGGAGGCATCTTGGGGAGTATTAATTCTTCAAAAGGAAATTTTTTTGGGCAGTAGGAACATGGCTACAGGGAAATAATGTTCTTGGGCGCTGTTAGATCTAATTAGTTTTAAATGCATTTGATTAGTTTCCATGTTATCTAGTTCGTTTCTTTTATACTAGTGCTGCTAAGTAGCTCTTCCTAATTGAAACCCCCCATCTTCGTACCAACCTTGTATATGTCTACTGTTAGAAAGCACTGTTAATTTTGTCCATCATGCATATGGTGATGTTCATGGGAAAAATGTTTTCTGATCTAACAATGTATGCATTTTGCAATTACAGAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGTAATTCATCTCTTTAGTTTTTTGTCCTATGGTTAGATTTCAATTGGTTTGGTGAACTTCAAAATGATGTCTTTTTTCTTTCCAATTATCCTCAGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAG

mRNA sequence

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGGTACAATGAGAAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTTGTTATCCAATTCGTCAACCCCAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTTGTCAGTGGTTCTCCTCAAATAAAGAAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAG

Coding sequence (CDS)

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGGTACAATGAGAAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTTGTTATCCAATTCGTCAACCCCAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTTGTCAGTGGTTCTCCTCAAATAAAGAAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAG

Protein sequence

MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS

Homology

[Close]

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-62
Identity = 126/157 (80.25%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QHAPGAGADAKNAQEE--DDDVPELVDGETFEAPAEE 156
           + APGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.9e-60
Identity = 125/157 (79.62%), Postives = 140/157 (89.17%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QHAPGAG--ADAKNAQEEDDDVPELVDGETFEAPAEE 156
           + A G G  A A   +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-37
Identity = 87/157 (55.41%), Postives = 117/157 (74.52%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 -KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEE 156
            +Q      +  ++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.9e-37
Identity = 87/157 (55.41%), Postives = 117/157 (74.52%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 -KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEE 156
            +Q      +  ++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-36
Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  + K+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 -KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
            +Q        A++  EEDDDVP+LV  E F+  A +N A+
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLV--ENFD-EASKNEAN 158

[Close]

BLAST of Cp4.1LG02g10110 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-74
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           Q  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cp4.1LG02g10110 vs. TrEMBL
Match: A0A061F327_THECC (Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_024222 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-64
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+ E+L K+A AVRTGGKG+MRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 QHAPGAGADAKNAQEE-DDDVPELVDGETFEAPAEENRAS 160
           +  P AGA+A   QEE DDDVP+LV GETFEA AEE +A+
Sbjct: 121 KQVPTAGAEATATQEEDDDDVPQLVGGETFEAAAEEGQAA 160

[Close]

BLAST of Cp4.1LG02g10110 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-64
Identity = 133/163 (81.60%), Postives = 147/163 (90.18%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD  +L+K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 QHAPGAGAD----AKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           + APG GA     A N +++DDDVP+LV+G+TFEA AEE +AS
Sbjct: 197 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Cp4.1LG02g10110 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-64
Identity = 134/160 (83.75%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A AVRTGGKG+MRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 QHAPGAGADAKNAQEEDDD-VPELVDGETFEAPAEENRAS 160
           + APGAGA A  AQ++DDD VP+LV G+TFEA AEE   +
Sbjct: 121 KQAPGAGAGAAAAQDDDDDEVPDLVAGQTFEAAAEEGHTA 160

[Close]

BLAST of Cp4.1LG02g10110 vs. TrEMBL
Match: M0U8X4_MUSAM (Nascent polypeptide-associated complex subunit beta OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.8e-64
Identity = 132/159 (83.02%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+ E+L K+A AVRTGGKG+MRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 37  MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQFVNPKVQASIAANTWVVSGSPQ KKLQD+LPGIINQLGPDNL+NL++LAE  +
Sbjct: 97  KDDLVIQFVNPKVQASIAANTWVVSGSPQTKKLQDLLPGIINQLGPDNLENLKRLAEHLQ 156

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           + APGAGA AK  Q++DDDVPELV GETFEA A+EN+AS
Sbjct: 157 KQAPGAGAPAK--QDDDDDVPELVPGETFEAAADENQAS 193

[Close]

BLAST of Cp4.1LG02g10110 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 238.8 bits (608), Expect = 2.3e-63
Identity = 126/157 (80.25%), Postives = 141/157 (89.81%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QHAPGAGADAKNAQEE--DDDVPELVDGETFEAPAEE 156
           + APGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cp4.1LG02g10110 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 231.9 bits (590), Expect = 2.8e-61
Identity = 125/157 (79.62%), Postives = 140/157 (89.17%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QHAPGAG--ADAKNAQEEDDDVPELVDGETFEAPAEE 156
           + A G G  A A   +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cp4.1LG02g10110 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.9e-75
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           Q  PGAG DAKNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cp4.1LG02g10110 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.9e-75
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           Q  PGAG DAKNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cp4.1LG02g10110 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           Q  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cp4.1LG02g10110 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           Q  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cp4.1LG02g10110 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 1.5e-64
Identity = 134/165 (81.21%), Postives = 148/165 (89.70%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD  +L+K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 QHAPGAGAD------AKNAQEEDDDVPELVDGETFEAPAEENRAS 160
           + APGAGA       A N +++DDDVP+LV+G+TFEA AEE +AS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	4.0e-62	80.25	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	4.9e-60	79.62	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_XENLA	5.9e-37	55.41	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENTR	5.9e-37	55.41	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_DANRE	1.7e-36	55.28	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g10110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	1.4e-74	94.34	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A061F327_THECC	1.8e-64	84.38	Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_02...	[more]
A0A0A0LTU8_CUCSA	1.8e-64	81.60	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
D7TXR6_VITVI	2.3e-64	83.75	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
M0U8X4_MUSAM	8.8e-64	83.02	Nascent polypeptide-associated complex subunit beta OS=Musa acuminata subsp. mal...	[more]

BLAST of Cp4.1LG02g10110 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	2.3e-63	80.25	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	2.8e-61	79.62	basic transcription factor 3	[more]

BLAST of Cp4.1LG02g10110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066313\|ref\|XP_008438287.1\|	1.9e-75	95.60	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|659066315\|ref\|XP_008438373.1\|	1.9e-75	95.60	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|449439237\|ref\|XP_004137393.1\|	2.1e-74	94.34	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|449439239\|ref\|XP_004137394.1\|	2.1e-74	94.34	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|659066946\|ref\|XP_008467234.1\|	1.5e-64	81.21	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10110.1	Cp4.1LG02g10110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 score: 1.9
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 score: 1.2
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 15
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..155 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g10110	Cucsa.112440	Cucumber (Gy14) v1	cgycpeB0261
Cp4.1LG02g10110	CmaCh13G011080	Cucurbita maxima (Rimu)	cmacpeB244
Cp4.1LG02g10110	CmaCh01G007630	Cucurbita maxima (Rimu)	cmacpeB490
Cp4.1LG02g10110	CmoCh01G007980	Cucurbita moschata (Rifu)	cmocpeB448
Cp4.1LG02g10110	Cla018640	Watermelon (97103) v1	cpewmB578
Cp4.1LG02g10110	Csa1G031860	Cucumber (Chinese Long) v2	cpecuB533
Cp4.1LG02g10110	MELO3C001952	Melon (DHL92) v3.5.1	cpemeB491
Cp4.1LG02g10110	ClCG04G012560	Watermelon (Charleston Gray)	cpewcgB507
Cp4.1LG02g10110	CSPI01G05240	Wild cucumber (PI 183967)	cpecpiB535
Cp4.1LG02g10110	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	cpelsiB446
Cp4.1LG02g10110	MELO3C001952.2	Melon (DHL92) v3.6.1	cpemedB582
Cp4.1LG02g10110	CsaV3_1G005140	Cucumber (Chinese Long) v3	cpecucB0665
Cp4.1LG02g10110	Bhi08G001617	Wax gourd	cpewgoB0706
Cp4.1LG02g10110	CsGy1G005010	Cucumber (Gy14) v2	cgybcpeB098
Cp4.1LG02g10110	Carg06975	Silver-seed gourd	carcpeB0738
Cp4.1LG02g10110	Carg04730	Silver-seed gourd	carcpeB0545

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g10110	Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cpecpeB431

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cpecpeB433
Cp4.1LG02g10110	Cucurbita moschata (Rifu)	cmocpeB210
Cp4.1LG02g10110	Silver-seed gourd	carcpeB0546