Cucsa.112440 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.112440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nascent polypeptide-associated complex subunit beta
Location	scaffold00953 : 1017823 .. 1020557 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGGTGGATCAGTTCGTAGCTTTAGCAACCTATTATTATATGGAGGGAAAGGGCGTATTAATCTGTTAGCGCCGTCCGGGAGTTTCGCTTTCTTCCGCGACCCTCAGTCTTATCCCCTAACTCCAAAACCCTAGCCCAAAGGTAATTCACTCCTTCCTCTTCGCTCTTCATCTCTTTCTATTCCTCGTCTTAAATCTGTTCTCCCCTTTGGTTCTTCGATTCTTCTTTTCTTGGACTCTTTTATTCTTTCCTCATGGTTGGCCTTGTAAGTTTAGACGATGTTTTTATAGATTGGTTTGTCCTGTTTCTCTATCTATTCGCATGCTAGGGTTTTCTTTTTGTTTTCTATTGTGCTCTACTTCTGCAAGGTTGTGTTCTTTTTTTCTTCTTCATTCGGGTCCCTTTTCTTAACCGATATTAAATTAATGCAAATTTGTTTGGGCTTCTAATTGGGAAGCCTTTTGGAATATCTCGACATTTTGATTGCTGCATTTCATTTTGGGTATATTTCTATGATTGAAGGATGTGGGTCTGTTCACTGCATGCTTATTACTTATGCAGCTATGCTTATTGAGTCTCAGTACGGTGGGTTTGTTTGTTTGTGCAATCTGTTTCCGGATTCATAATTTTTGAGCAGTAGATGAAAAATGATATTTGTAAAATTCCTTGAGTGTTGGTGGGTATCTGCTCCTGCTATTTGCTTTTGGATTTTACTTTTATTATATCTGGATTATTCGAAATGTTCTGTTCTTGTTATAACTTATACCCGAAGATGTGTTCCTCCCTGCATCCAGCTTTGTGGGTTACTTATGATGGACATGATTTAATTCTGTTTGGTGTTGTGCAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGGTAATTTGTAATATTTATTGCAACTCAGTTCTTGTCCATTCTATTGTTGATCATGGAAGGAGATGGCATGGATAACCTTCAAATTTGATGGATCATAAGAACTTTACAAAATTTCAACTTTGCAATGTGATAAGAAATTATGTGTCCTTGCTAATTTAAATTTATTTTTTACAAATACTAACTAAAATAGAAATAGTAGTAGGAATCTATTTTAAGCAATAAGTTATACCAAACTTCCATCTCAGTGTTTTTCTCTTACCTTGCTGATCTTTACATGATGACTTTTTAAAATTTAAAGTTTTTAAGTTTTACACAAGGTTATGCAATTATATCATCATCTTAGTTACCTTATGGTAACTGGCACTTGGCAAGTCTTCTTGTGTATTGTACTTGTTTATTTGTTTTTCATGTCATAATCTTTCTATTATCTCTCCAATGAAATTCGCTACAGACATTACCTTTATTCCATTTGTTGAATTCTTATTTTCAAACAATTGCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGGTAACTTTTCTTAGACAATGTATTGTACTTGATTTTTATTGGTTTACATTCTTGGATAGCTCTTAACTAATTTTGTAAAAAAAATAATTCTGTCCAGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAGTATGTATCTCTGCACCATGTTGTAAATCTTATAACACGATTGTCTTCTTTCCATTGCTTGAATATAATTTGACATACTGGACAACCATCGAAGGTCTTTGGGAGTAGTTATATACTTCTTTGAGAGAATGTTTTCTTGTTTTGGGCAATTGGATCGTGGCTATAGAAAAATAATGTTCTTCTATTTGTTTAAATTGTGAGATCTTGTTGGTTTTAAGTGGATTTTATTAGTTTTCATTGTAACTATTCATGGAACCTGCTATTCTTACCAACCTTCAATGGATTACCGTTAGAAATCATCTGGTTGTCTTTCATTCTAATTTTTATTTTGTTATTTCGAAATTCTAATTATTTGTACGTTTCCCAACTTCAGAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTACGTTAGTTATCTCTCGAGTTATGTTTTATTGTTAGGAGCATTCCGTTGGTTTGAACTTCAAAATAATGCTTCTTGTTCTACTATCCTCAGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAGATAGATCCTTTTGAAAGAGAGGAGTGTTGTTTTTATGCCGTTTTATACTTTCCTAGAGTTGCTTCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGAGATGAGGATCGGTACTTGTGTGTTTGTTCAATTCCCTGCCATACTCTTTAATCATCCCATCATCCCATCATCCTTTCATTCCTCCGGTAATACACAACAAAAGTTGCGGAGCTTAGCTTCTCCCTCATGACTTATGCTGTCCATTACTATTCTTGGTAATTCTTCTTGACGTTAAAATTATATATAAAAATTCGTAATTTACC

mRNA sequence

GTTTTGGTGGATCAGTTCGTAGCTTTAGCAACCTATTATTATATGGAGGGAAAGGGCGTATTAATCTGTTAGCGCCGTCCGGGAGTTTCGCTTTCTTCCGCGACCCTCAGTCTTATCCCCTAACTCCAAAACCCTAGCCCAAAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAGATAGATCCTTTTGAAAGAGAGGAGTGTTGTTTTTATGCCGTTTTATACTTTCCTAGAGTTGCTTCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGAGATGAGGATCGGTACTTGTGTGTTTGTTCAATTCCCTGCCATACTCTTTAATCATCCCATCATCCCATCATCCTTTCATTCCTCCGGTAATACACAACAAAAGTTGCGGAGCTTAGCTTCTCCCTCATGACTTATGCTGTCCATTACTATTCTTGGTAATTCTTCTTGACGttaaaattatatataaaaattCGTAATTTACC

Coding sequence (CDS)

ATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAG

Protein sequence

MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS*

Homology

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BLAST of Cucsa.112440 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.8e-67
Identity = 129/157 (82.17%), Postives = 142/157 (90.45%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 157 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 192
           +Q PGAG  P   QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cucsa.112440 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-62
Identity = 125/157 (79.62%), Postives = 138/157 (87.90%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 157 QQVPGAGGDPKNA--QEEDDDVPELVEGETFEAPAEE 192
           +Q  G G        +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cucsa.112440 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-42
Identity = 90/157 (57.32%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 97  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 156
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 157 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 192
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Cucsa.112440 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-42
Identity = 90/157 (57.32%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 97  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 156
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 157 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 192
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Cucsa.112440 vs. Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 86/147 (58.50%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 97  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 156
           KDD  VI FNNPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 157 KQQV-PGAGGDPKNAQEEDDDVPELVE 182
            +QV       P++  EEDDDVP+LVE
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVE 147

[Close]

BLAST of Cucsa.112440 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 6.1e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 157 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 196
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cucsa.112440 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 141/201 (70.15%), Postives = 162/201 (80.60%), Query Frame = 1


Query: 8   LYPKMCSSLHPALWVTYD------GHDLILF---GVVQMDQERLRKIASAVRTGGKGTVR 67
           L P+ C +L+ +L   +D      G + ++F       MD  +L+K+A AVRTGGKG+VR
Sbjct: 39  LMPRTCLNLYCSLIAFFDCEFRSEGKNSLVFKKRDEAPMDHTKLQKMAGAVRTGGKGSVR 98

Query: 68  RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTW 127
           RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTW
Sbjct: 99  RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTW 158

Query: 128 VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQVPGAGGD----PKNAQEEDD 187
           VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF++Q PG G        N +++DD
Sbjct: 159 VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDD 218

Query: 188 DVPELVEGETFEAPAEENRSS 196
           DVP+LVEG+TFEA AEE ++S
Sbjct: 219 DVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Cucsa.112440 vs. TrEMBL
Match: A0A061F327_THECC (Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_024222 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-66
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M+ E+L K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 157 QQVPGAGGDPKNAQEE-DDDVPELVEGETFEAPAEENRSS 196
           +QVP AG +    QEE DDDVP+LV GETFEA AEE +++
Sbjct: 121 KQVPTAGAEATATQEEDDDDVPQLVGGETFEAAAEEGQAA 160

[Close]

BLAST of Cucsa.112440 vs. TrEMBL
Match: A0A059A4Q1_EUCGR (Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_K02308 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-66
Identity = 135/165 (81.82%), Postives = 149/165 (90.30%), Query Frame = 1


Query: 34  VVQMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 93
           + +M++ERL K+A +VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV
Sbjct: 70  LTKMNRERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 129

Query: 94  NIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAE 153
           NIFKDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAE
Sbjct: 130 NIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAE 189

Query: 154 QFKQQVPGA--GGDPKNAQEEDDD-VPELVEGETFEAPAEENRSS 196
           QF++QVPGA  G      Q++DDD VPELV GETFEA AEE +++
Sbjct: 190 QFQKQVPGAATGSGATGMQDDDDDEVPELVPGETFEAAAEEGQAT 234

[Close]

BLAST of Cucsa.112440 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66
Identity = 132/160 (82.50%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M++E+L K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 157 QQVPGAGGDPKNAQEEDDD-VPELVEGETFEAPAEENRSS 196
           +Q PGAG     AQ++DDD VP+LV G+TFEA AEE  ++
Sbjct: 121 KQAPGAGAGAAAAQDDDDDEVPDLVAGQTFEAAAEEGHTA 160

[Close]

BLAST of Cucsa.112440 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 129/157 (82.17%), Postives = 142/157 (90.45%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 157 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 192
           +Q PGAG  P   QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cucsa.112440 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 240.4 bits (612), Expect = 9.7e-64
Identity = 125/157 (79.62%), Postives = 138/157 (87.90%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 157 QQVPGAGGDPKNA--QEEDDDVPELVEGETFEAPAEE 192
           +Q  G G        +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cucsa.112440 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 8.8e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 157 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 196
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cucsa.112440 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 8.8e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 157 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 196
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cucsa.112440 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 310.8 bits (795), Expect = 1.7e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 157 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 196
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cucsa.112440 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 310.8 bits (795), Expect = 1.7e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 1


Query: 37  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 96
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 97  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 156
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 157 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 196
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cucsa.112440 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 2.1e-68
Identity = 141/201 (70.15%), Postives = 162/201 (80.60%), Query Frame = 1


Query: 8   LYPKMCSSLHPALWVTYD------GHDLILF---GVVQMDQERLRKIASAVRTGGKGTVR 67
           L P+ C +L+ +L   +D      G + ++F       MD  +L+K+A AVRTGGKG+VR
Sbjct: 39  LMPRTCLNLYCSLIAFFDCEFRSEGKNSLVFKKRDEAPMDHTKLQKMAGAVRTGGKGSVR 98

Query: 68  RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTW 127
           RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTW
Sbjct: 99  RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTW 158

Query: 128 VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQVPGAGGD----PKNAQEEDD 187
           VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF++Q PG G        N +++DD
Sbjct: 159 VVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDD 218

Query: 188 DVPELVEGETFEAPAEENRSS 196
           DVP+LVEG+TFEA AEE ++S
Sbjct: 219 DVPDLVEGQTFEAAAEEKQAS 239

The following BLAST results are available for this feature:

BLAST of Cucsa.112440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	8.8e-67	82.17	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	1.7e-62	79.62	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_XENLA	3.4e-42	57.32	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENTR	3.4e-42	57.32	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_HUMAN	1.3e-41	58.50	Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1	[more]

BLAST of Cucsa.112440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	6.1e-83	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0A0LTU8_CUCSA	1.5e-68	70.15	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A061F327_THECC	1.8e-66	83.75	Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_02...	[more]
A0A059A4Q1_EUCGR	1.8e-66	81.82	Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUG...	[more]
D7TXR6_VITVI	2.3e-66	82.50	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]

BLAST of Cucsa.112440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	5.0e-68	82.17	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	9.7e-64	79.62	basic transcription factor 3	[more]

BLAST of Cucsa.112440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439239\|ref\|XP_004137394.1\|	8.8e-83	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|449439237\|ref\|XP_004137393.1\|	8.8e-83	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|659066313\|ref\|XP_008438287.1\|	1.7e-81	98.74	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|659066315\|ref\|XP_008438373.1\|	1.7e-81	98.74	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|700209106\|gb\|KGN64202.1\|	2.1e-68	70.15	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom
IPR002715	Nas_poly-pep-assoc_cplx_dom
IPR002715	Nas_poly-pep-assoc_cplx_dom
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.112440.4	Cucsa.112440.4	mRNA
Cucsa.112440.3	Cucsa.112440.3	mRNA
Cucsa.112440.2	Cucsa.112440.2	mRNA
Cucsa.112440.1	Cucsa.112440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 score: 1.3
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 score: 1.3
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 16
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..155 score: 7.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.112440	Cla018640	Watermelon (97103) v1	cgywmB163
Cucsa.112440	Csa1G031860	Cucumber (Chinese Long) v2	cgycuB137
Cucsa.112440	MELO3C001952	Melon (DHL92) v3.5.1	cgymeB156
Cucsa.112440	ClCG04G012560	Watermelon (Charleston Gray)	cgywcgB160
Cucsa.112440	CSPI01G05240	Wild cucumber (PI 183967)	cgycpiB137
Cucsa.112440	CmaCh13G011080	Cucurbita maxima (Rimu)	cgycmaB0262
Cucsa.112440	CmaCh01G007630	Cucurbita maxima (Rimu)	cgycmaB0271
Cucsa.112440	CmoCh01G007980	Cucurbita moschata (Rifu)	cgycmoB0267
Cucsa.112440	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	cgylsiB148
Cucsa.112440	Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cgycpeB0259
Cucsa.112440	Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cgycpeB0261
Cucsa.112440	MELO3C001952.2	Melon (DHL92) v3.6.1	cgymedB156
Cucsa.112440	CsaV3_1G005140	Cucumber (Chinese Long) v3	cgycucB143
Cucsa.112440	Cla97C04G079550	Watermelon (97103) v2	cgywmbB156
Cucsa.112440	Bhi08G001617	Wax gourd	cgywgoB177
Cucsa.112440	Carg04730	Silver-seed gourd	carcgyB0450
Cucsa.112440	Carg06975	Silver-seed gourd	carcgyB0597

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.112440	Cucurbita moschata (Rifu)	cgycmoB0260