CmoCh01G007980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G007980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cmo_Chr01 : 4200081 .. 4202448 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGGTACAATGAGAAGGTAATTCTGTAATTTTATTGCAATTTTCCTCTTGTCTGTTCTATTGCTGTAACGATTTCAGCCTGTAAGGTGATGATATTGAAGCTTGGATTTCAGACCTTCATTTTAGAGGACAATGAGCTACCTGAAATCTGATAACCTTTAACCTTATCAGTCTGGCCTGACCAATTTTGAAGTTTTAAATAGTTACACCTCTTCTATAAGGTTATGCAATAGCGAATACTGATGACACCATCTTGGTTACCTTGCACTTGATAAGTTATTTCTTGTCGTTCATTTCCCATTGTCTTTTATTTGTCATAAAATATATAGTTTTAACTGTCGTAAACTTGTAATTTCTAAAATGAAATTCATTTTAAGATGTTCTCGTTTTATTCCATCAGTTGAATTTTTATTTTCAATCACATTCTCTTGATAATAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATGTTGTTATCCAATTCGTCAACCCTAAGGGTAAATTCTTATACAATTTTTGTACTTCATCCTTGTTGCGCTACATTCTTTGATGACTCGTAACGTTACCTTTTAACTTTTTTCTTGTCCAGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAGTACGTATCTCTGTTAAACCATGTTGTAAATTTAGTATGGTGACTGGTGCAGATTGTTTTCTTTCCAGTGCTTGAATATAATAAATTCATATACTGGACATCCTTTGGAGGCATCTTGGGGAGTATTAATTCTTCAAAAGGAAAATTTTTTGGGCAGTAGGAACATGGCTACAGGGAAATAATGTTCTTGGGCCCTGTTAGATCTAATTAGTTTTAAATGCATTTGATTAGTTTTCATGTTATCTATTTCGTTTCTTTTATACTAGTGCTGCTAAGTAGCTCTACCTAATTGAAACCCCCCATCTTCGTACCAACCTTGTATTATATGTCTTACTGTTCGAAAGCATTGTTAATTTTGTCCATCATGCATATGGTGATGTTCATGGGAAAAATGTTTTCTGATCTAACTATTTATGCATTTTGCAATTACAGAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGTAATTCATCTCTTTAGTTTTTTGTCCTACGGTTAGATTTCAATTGGTTTGGTGAACTTAAAAATGATGTCTTTTTTATCCAATTATCCTCAGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAGAGGAGTGATCCTTTCGAATGAGTGTTTTATGCCGTTTTATACTTCTAGAATTGCTTCAGACGAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTATATGATGGAGGAACGGTACTTTCTGTGTTTGTTTCATGCCTGCCATACTCTTAAATCTTCCAATGATCCTTCTAATCCGCAGTATACACAAAGTTGCAGCAGAGATTTTTGCAATCCATCATTCTATTTGGATGTTTATGACGTTCAATTAGAACAATTCATGGGCATTTGCTTCCTAAAATTACCACTGGGGATATGATGATACATTCAATGCCGAGTATCGAAATTTGGTTTAACTTTGTGGTTACTGAGACAGAGGTATGAATTTGTTCTCCCATGTTCGTTTGTGTACCTTAAATTGCTTAGGAACAAATTCAAAAGTGTTCTTATGTATGGTTGTAGAGGCCTCAGAAATGGAACTAGTTGAATTTTGTGACATTTTAGAAAGGGCACATGAAATGATATGTTAGGCACATTCCCTGGGTAATTCCGTGAACCTCACAGAATCTTTGCAATAATCGTATACCAAATGCCTTGCACGAACCCACTTGAGTTGGTGTGCTTTGTGCCTGGTTAGCCCTCTTAACGATGGCTTGTCCCACCAGAATTGGCTTGGCATCCCACACTTGGCCTCTGCATCCTCCTCTGGCTCCAATTCGCAGGCTTTAATGTCAAAAGATCGAAATGTAGCCACAAATGGCGCGTTGCTCCAATTGGTTTTAACTCTTCCTCCTTGTGTCGCCCAGTCATCCGCATTCCATATGGAACCTCTAACGCCCATGGCTTGGTTTCTG

mRNA sequence

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGCCTGTAAGTTGAATTTTTATTTTCAATCACATTCTCTTGATAATAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATGTTGTTATCCAATTCGTCAACCCTAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAGAGGAGTGATCCTTTCGAATGAGTGTTTTATGCCGTTTTATACTTCTAGAATTGCTTCAGACGAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTATATGATGGAGGAACGGTACTTTCTGTGTTTGTTTCATGCCTGCCATACTCTTAAATCTTCCAATGATCCTTCTAATCCGCAGTATACACAAAGTTGCAGCAGAGATTTTTGCAATCCATCATTCTATTTGGATGTTTATGACGTTCAATTAGAACAATTCATGGGCATTTGCTTCCTAAAATTACCACTGGGGATATGATGATACATTCAATGCCGAGTATCGAAATTTGGTTTAACTTTGTGGTTACTGAGACAGAGGTATGAATTTGTTCTCCCATGTTCGTTTGTGTACCTTAAATTGCTTAGGAACAAATTCAAAAGTGTTCTTATGTATGGTTGTAGAGGCCTCAGAAATGGAACTAGTTGAATTTTGTGACATTTTAGAAAGGGCACATGAAATGATATGTTAGGCACATTCCCTGGTCATCCGCATTCCATATGGAACCTCTAACGCCCATGGCTTGGTTTCTG

Coding sequence (CDS)

ATGGATCAGGAGAGACTTAGGAAGATTGCCAGTGCTGTCCGCACTGGTGGAAAGGCCTGTAAGTTGAATTTTTATTTTCAATCACATTCTCTTGATAATAGAAAGAAGAAGGCAGTTCACAAGACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGTGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATGTTGTTATCCAATTCGTCAACCCTAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAAATTACAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGACAACTTGGACAACTTGAGAAAATTGGCTGAGCAGTTTAAACAGCATGCACCTGGAGCAGGTGCTGATGCAAAGAATGCACAAGAGGAGGATGACGATGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGGGCATCCTAG

Homology

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BLAST of CmoCh01G007980 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-58
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M++E+L K+A+ VRTGGK               RKKKAVHKTTTTDDKRLQSTLKR+GVN
Sbjct: 1   MNREKLMKMANTVRTGGKGTV-----------RRKKKAVHKTTTTDDKRLQSTLKRVGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           +IPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNL
Sbjct: 61  SIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEE--DDDVPELVDGETFEAPAEE 167
           DNL+KLAEQF++ APGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 DNLKKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of CmoCh01G007980 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.6e-56
Identity = 122/168 (72.62%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M++E+L K+A+ VRTGGK               RKKKAVHKT TTDDKRLQSTLKRIGVN
Sbjct: 1   MNREKLMKMANTVRTGGKGTV-----------RRKKKAVHKTNTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           +IPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+
Sbjct: 61  SIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNM 120

Query: 121 DNLRKLAEQFKQHAPGAG--ADAKNAQEEDDDVPELVDGETFEAPAEE 167
           DNL+KLAEQF++ A G G  A A   +E+DDDVPELV GETFE  AEE
Sbjct: 121 DNLKKLAEQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

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BLAST of CmoCh01G007980 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-33
Identity = 84/168 (50.00%), Postives = 114/168 (67.86%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M+QE+L K+ + VR GGK               RKKK VH+T T DDK+LQS+LK++ VN
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTA-----------RRKKKVVHRTATADDKKLQSSLKKLAVN 60

Query: 61  AIPAIEEVNIFKDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDN 120
            I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+
Sbjct: 61  NIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADS 120

Query: 121 LDNLRKLAEQF-KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEE 167
           L +LRKLAEQF +Q      +  ++ +EEDDDVPELV G   EA   E
Sbjct: 121 LTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of CmoCh01G007980 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-33
Identity = 84/168 (50.00%), Postives = 114/168 (67.86%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M+QE+L K+ + VR GGK               RKKK VH+T T DDK+LQS+LK++ VN
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTA-----------RRKKKVVHRTATADDKKLQSSLKKLAVN 60

Query: 61  AIPAIEEVNIFKDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDN 120
            I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+
Sbjct: 61  NIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADS 120

Query: 121 LDNLRKLAEQF-KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEE 167
           L +LRKLAEQF +Q      +  ++ +EEDDDVPELV G   EA   E
Sbjct: 121 LTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of CmoCh01G007980 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-33
Identity = 86/172 (50.00%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M+QE+L K+ + VR GGK               RKKK VH+T T DDK+LQS+LK++ VN
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTA-----------RRKKKVVHRTATADDKKLQSSLKKLVVN 60

Query: 61  AIPAIEEVNIFKDD-VVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDN 120
            I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K+L ++LPGI++QLG D+
Sbjct: 61  NIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADS 120

Query: 121 LDNLRKLAEQF-KQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           L +LRKLAEQF +Q        A++  EEDDDVP+LV  E F+  A +N A+
Sbjct: 121 LTSLRKLAEQFPRQVLDNKAPKAEDIDEEDDDVPDLV--ENFD-EASKNEAN 158

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BLAST of CmoCh01G007980 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.8e-70
Identity = 147/170 (86.47%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MDQERLRKIASAVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 5   MDQERLRKIASAVRTGGKGTV-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 64

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 65  AIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 124

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQFKQ  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 DNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CmoCh01G007980 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.4e-61
Identity = 131/174 (75.29%), Postives = 143/174 (82.18%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MD  +L+K+A AVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSV-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 136

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 137 AIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 196

Query: 121 DNLRKLAEQFKQHAPGAGAD----AKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQF++ APG GA     A N +++DDDVP+LV+G+TFEA AEE +AS
Sbjct: 197 DNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of CmoCh01G007980 vs. TrEMBL
Match: A0A061F327_THECC (Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_024222 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 132/171 (77.19%), Postives = 142/171 (83.04%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M+ E+L K+A AVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSM-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 61  AIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEE-DDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQF++  P AGA+A   QEE DDDVP+LV GETFEA AEE +A+
Sbjct: 121 DNLRKLAEQFQKQVPTAGAEATATQEEDDDDVPQLVGGETFEAAAEEGQAA 160

[Close]

BLAST of CmoCh01G007980 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 131/171 (76.61%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M++E+L K+A AVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 1   MNREKLMKMAGAVRTGGKGSM-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 61  AIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDD-VPELVDGETFEAPAEENRAS 171
           DNLRKLAEQF++ APGAGA A  AQ++DDD VP+LV G+TFEA AEE   +
Sbjct: 121 DNLRKLAEQFQKQAPGAGAGAAAAQDDDDDEVPDLVAGQTFEAAAEEGHTA 160

[Close]

BLAST of CmoCh01G007980 vs. TrEMBL
Match: M0U8X4_MUSAM (Nascent polypeptide-associated complex subunit beta OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.2e-60
Identity = 129/170 (75.88%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M+ E+L K+A AVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 37  MNVEKLMKMAGAVRTGGKGSM-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 96

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDD+VIQFVNPKVQASIAANTWVVSGSPQ KKLQD+LPGIINQLGPDNL
Sbjct: 97  AIPAIEEVNIFKDDLVIQFVNPKVQASIAANTWVVSGSPQTKKLQDLLPGIINQLGPDNL 156

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           +NL++LAE  ++ APGAGA AK  Q++DDDVPELV GETFEA A+EN+AS
Sbjct: 157 ENLKRLAEHLQKQAPGAGAPAK--QDDDDDVPELVPGETFEAAADENQAS 193

[Close]

BLAST of CmoCh01G007980 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-59
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M++E+L K+A+ VRTGGK               RKKKAVHKTTTTDDKRLQSTLKR+GVN
Sbjct: 1   MNREKLMKMANTVRTGGKGTV-----------RRKKKAVHKTTTTDDKRLQSTLKRVGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           +IPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNL
Sbjct: 61  SIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEE--DDDVPELVDGETFEAPAEE 167
           DNL+KLAEQF++ APGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 DNLKKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of CmoCh01G007980 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-57
Identity = 122/168 (72.62%), Postives = 136/168 (80.95%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           M++E+L K+A+ VRTGGK               RKKKAVHKT TTDDKRLQSTLKRIGVN
Sbjct: 1   MNREKLMKMANTVRTGGKGTV-----------RRKKKAVHKTNTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           +IPAIEEVNIFKDDVVIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+
Sbjct: 61  SIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNM 120

Query: 121 DNLRKLAEQFKQHAPGAG--ADAKNAQEEDDDVPELVDGETFEAPAEE 167
           DNL+KLAEQF++ A G G  A A   +E+DDDVPELV GETFE  AEE
Sbjct: 121 DNLKKLAEQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of CmoCh01G007980 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 5.1e-71
Identity = 148/170 (87.06%), Postives = 150/170 (88.24%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MDQERLRKIASAVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 1   MDQERLRKIASAVRTGGKGTM-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 61  AIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQFKQ  PGAG DAKNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 121 DNLRKLAEQFKQQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of CmoCh01G007980 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 5.1e-71
Identity = 148/170 (87.06%), Postives = 150/170 (88.24%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MDQERLRKIASAVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 5   MDQERLRKIASAVRTGGKGTM-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 64

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 65  AIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 124

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQFKQ  PGAG DAKNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 DNLRKLAEQFKQQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CmoCh01G007980 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.5e-70
Identity = 147/170 (86.47%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MDQERLRKIASAVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 1   MDQERLRKIASAVRTGGKGTV-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 61  AIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQFKQ  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 121 DNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of CmoCh01G007980 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.5e-70
Identity = 147/170 (86.47%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MDQERLRKIASAVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 5   MDQERLRKIASAVRTGGKGTV-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 64

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 65  AIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 124

Query: 121 DNLRKLAEQFKQHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQFKQ  PGAG D KNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 125 DNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CmoCh01G007980 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-61
Identity = 132/176 (75.00%), Postives = 144/176 (81.82%), Query Frame = 1


Query: 1   MDQERLRKIASAVRTGGKACKLNFYFQSHSLDNRKKKAVHKTTTTDDKRLQSTLKRIGVN 60
           MD  +L+K+A AVRTGGK               RKKKAVHKTTTTDDKRLQSTLKRIGVN
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSV-----------RRKKKAVHKTTTTDDKRLQSTLKRIGVN 60

Query: 61  AIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNL 120
           AIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNL
Sbjct: 61  AIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNL 120

Query: 121 DNLRKLAEQFKQHAPGAGAD------AKNAQEEDDDVPELVDGETFEAPAEENRAS 171
           DNLRKLAEQF++ APGAGA       A N +++DDDVP+LV+G+TFEA AEE +AS
Sbjct: 121 DNLRKLAEQFQKQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

The following BLAST results are available for this feature:

BLAST of CmoCh01G007980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	3.8e-58	73.21	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	4.6e-56	72.62	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_XENTR	2.5e-33	50.00	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENLA	2.5e-33	50.00	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_DANRE	7.2e-33	50.00	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]

BLAST of CmoCh01G007980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	1.8e-70	86.47	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0A0LTU8_CUCSA	7.4e-61	75.29	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A061F327_THECC	1.7e-60	77.19	Nascent polypeptide-associated complex subunit beta OS=Theobroma cacao GN=TCM_02...	[more]
D7TXR6_VITVI	2.2e-60	76.61	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
M0U8X4_MUSAM	8.2e-60	75.88	Nascent polypeptide-associated complex subunit beta OS=Musa acuminata subsp. mal...	[more]

BLAST of CmoCh01G007980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	2.1e-59	73.21	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	2.6e-57	72.62	basic transcription factor 3	[more]

BLAST of CmoCh01G007980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066315\|ref\|XP_008438373.1\|	5.1e-71	87.06	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|659066313\|ref\|XP_008438287.1\|	5.1e-71	87.06	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|449439239\|ref\|XP_004137394.1\|	2.5e-70	86.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|449439237\|ref\|XP_004137393.1\|	2.5e-70	86.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|659066946\|ref\|XP_008467234.1\|	6.3e-61	75.00	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007980.1	CmoCh01G007980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 47..102 score: 2.2
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 47..102 score: 1.2
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 44..108 score: 15
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..168 score: 4.8
None	No IPR available	PANTHER	PTHR10351:SF50	SUBFAMILY NOT NAMED	coord: 1..168 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G007980	Cucsa.112440	Cucumber (Gy14) v1	cgycmoB0267
CmoCh01G007980	CmaCh13G011080	Cucurbita maxima (Rimu)	cmacmoB225
CmoCh01G007980	CmaCh01G007630	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G007980	Cla018640	Watermelon (97103) v1	cmowmB446
CmoCh01G007980	Csa1G031860	Cucumber (Chinese Long) v2	cmocuB417
CmoCh01G007980	MELO3C001952	Melon (DHL92) v3.5.1	cmomeB383
CmoCh01G007980	ClCG04G012560	Watermelon (Charleston Gray)	cmowcgB404
CmoCh01G007980	CSPI01G05240	Wild cucumber (PI 183967)	cmocpiB421
CmoCh01G007980	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	cmolsiB396
CmoCh01G007980	Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cmocpeB444
CmoCh01G007980	Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G007980	MELO3C001952.2	Melon (DHL92) v3.6.1	cmomedB440
CmoCh01G007980	CsaV3_1G005140	Cucumber (Chinese Long) v3	cmocucB0501
CmoCh01G007980	Cla97C04G079550	Watermelon (97103) v2	cmowmbB450
CmoCh01G007980	Bhi08G001617	Wax gourd	cmowgoB0584
CmoCh01G007980	CsGy1G005010	Cucumber (Gy14) v2	cgybcmoB099
CmoCh01G007980	Carg06975	Silver-seed gourd	carcmoB0708
CmoCh01G007980	Carg04730	Silver-seed gourd	carcmoB0531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G007980	Cucurbita moschata (Rifu)	cmocmoB172