CsGy1G005010 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G005010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Nascent polypeptide-associated complex subunit beta
Location	Chr1 : 3386663 .. 3389388 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGTGTGTTTCTTTCCTTTCTTTTTTTGGTTTTGGTGGATCAGTTCGTAGCTTTAGCAACCTATTATTATATGGAGGGAAAGGGCGTATTAATCTGTTAGCGCCGTCCGGGAGTTTCGCTTTCTTCCGCGACCCTCAGTCTTATCCCCTAACTCCAAAACCCTAGCCCAAAGGTAATTCACTCCTTCCTCTTCGCTCTTCATCTCTTTCTATTCCTCGTCTTAAATCTGTTCTCCCCTTTGGTTCTTCGATTCTTCTTTTCTTGGACTCTTTTATTCTTTCCTCATGGTTGGCCTTGTAAGTTTAGACGATGTTTTTATAGATTGGTTTGTCCTGTTTCTCTATCTATTCGCATGCTAGGGTTTTCTTTTTGTTTTCTATTGTGCTCTACTTCTGCAAGGTTGTGTTCTTTTTTTCTTCTTCATTCGGGTCCCTTTTCTTAACCGATATTAAATTAATGCAAATTTGTTTGGGCTTCTAATTGGGAAGCCTTTTGGAATATCTCGACATTTTGATTGCTGCATTTCATTTTGGGTATATTTCTATGATTGAAGGATGTGGGTCTGTTCACTGCATGCTTATTACTTATGCAGCTATGCTTATTGAGTCTCAGTACGGTGGGTTTGTTTGTTTGTGCAATCTGTTTCCGGATTCATAATTTTTGAGCAGTAGATGAAAAATGATATTTGTAAAATTCCTTGAGTGTTGGTGGGTATCTGCTCCTGCTATTTGCTTTTGGATTTTACTTTTATTATATCTGGATTATTCGAAATGTTCTGTTCTTGTTATAACTTATACCCGAAGATGTGTTCCTCCCTGCATCCAGCTTTGTGGGTTACTTATGATGGACATGATTTAATTCTGTTTGGTGTTGTGCAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGGTAATTTGTAATATTTATTGCAACTCAGTTCTTGTCCATTCTATTGTTGATCATGGAAGGAGATGGCATGGATAACCTTCAAATTTGATGGATCATAAGAACTTTACAAAATTTCAACTTTGCAATGTGATAAGAAATTATGTGTCCTTGCTAATTTAAATTTATTTTTTACAAATACTAACTAAAATAGAAATAGTAGTAGGAATCTATTTTAAGCAATAAGTTATACCAAACTTCCATCTCAGTGTTTTTCTCTTACCTTGCTGATCTTTACATGATGACTTTTTAAAATTTAAAGTTTTTAAGTTTTACACAAGGTTATGCAATTATATCATCATCTTAGTTACCTTATGGTAACTGGCACTTGGCAAGTCTTCTTGTGTATTGTACTTGTTTATTTGTTTTTCATGTCATAATCTTTCTATTATCTCTCCAATGAAATTCGCTACAGACATTACCTTTATTCCATTTGTTGAATTCTTATTTTCAAACAATTGCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGGTAACTTTTCTTAGACAATGTATTGTACTTGATTTTTATTGGTTTACATTCTTGGATAGCTCTTAACTAATTTTGTAAAAAAAATAATTCTGTCCAGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAGTATGTATCTCTGCACCATGTTGTAAATCTTATAACACGATTGTCTTCTTTCCATTGCTTGAATATAATTTGACATACTGGACAACCATCGAAGGTCTTTGGGAGTAGTTATATACTTCTTTGAGAGAATGTTTTCTTGTTTTGGGCAATTGGATCGTGGCTATAGAAAAATAATGTTCTTCTATTTGTTTAAATTGTGAGATCTTGTTGGTTTTAAGTGGATTTTATTAGTTTTCATTGTAACTATTCATGGAACCTGCTATTCTTACCAACCTTCAATGGATTACCGTTAGAAATCATCTGGTTGTCTTTCATTCTAATTTTTATTTTGTTATTTCGAAATTCTAATTATTTGTACGTTTCCCAACTTCAGAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTACGTTAGTTATCTCTCGAGTTATGTTTTATTGTTAGGAGCATTCCGTTGGTTTGAACTTCAAAATAATGCTTCTTGTTCTACTATCCTCAGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAGATAGATCCTTTTGAAAGAGAGGAGTGTTGTTTTTATGCCGTTTTATACTTTCCTAGAGTTGCTTCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGAGATGAGGATCGGTACTTGTGTGTTTGTTCAATTCCCTGCCATACTCTTTAATCATCCCATCATCCCATCATCCTTTCATTCCTCCGGTAATACACAACAAAAGTTGCGGAGCTTAGCTTCTCCCTCATGACTTATGCTGTCCATTACTATTCTTGGTAATTCTT

mRNA sequence

AGATGTGTGTTTCTTTCCTTTCTTTTTTTGGTTTTGGTGGATCAGTTCGTAGCTTTAGCAACCTATTATTATATGGAGGGAAAGGGCGTATTAATCTGTTAGCGCCGTCCGGGAGTTTCGCTTTCTTCCGCGACCCTCAGTCTTATCCCCTAACTCCAAAACCCTAGCCCAAAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAGATAGATCCTTTTGAAAGAGAGGAGTGTTGTTTTTATGCCGTTTTATACTTTCCTAGAGTTGCTTCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGAGATGAGGATCGGTACTTGTGTGTTTGTTCAATTCCCTGCCATACTCTTTAATCATCCCATCATCCCATCATCCTTTCATTCCTCCGGTAATACACAACAAAAGTTGCGGAGCTTAGCTTCTCCCTCATGACTTATGCTGTCCATTACTATTCTTGGTAATTCTT

Coding sequence (CDS)

ATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACTGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACTACAACTGATGACAAAAGGCTCCAGAGTACTTTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAAAGGTTCAAGCATCTATTGCTGCAAACACGTGGGTCGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTCCAGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGTACCTGGAGCTGGTGGTGATCCAAAGAATGCACAAGAGGAGGATGATGATGTTCCGGAACTTGTTGAGGGTGAGACTTTCGAAGCTCCCGCAGAAGAAAATCGTTCTTCTTAG

Protein sequence

MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS

Homology

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BLAST of CsGy1G005010 vs. NCBI nr
Match: XP_004137393.1 (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus] >KGN63965.1 hypothetical protein Csa_1G031860 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

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BLAST of CsGy1G005010 vs. NCBI nr
Match: XP_004137394.1 (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

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BLAST of CsGy1G005010 vs. NCBI nr
Match: XP_008438287.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+R XXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRXXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

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BLAST of CsGy1G005010 vs. NCBI nr
Match: XP_008438373.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo] >XP_008438455.1 PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+R XXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRXXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

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BLAST of CsGy1G005010 vs. NCBI nr
Match: XP_022137240.1 (nascent polypeptide-associated complex subunit beta-like [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 151/160 (94.38%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+R XXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRXXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQVPGAGGDPKNAQEEDDD-VPELVEGETFEAPAEENRSS 160
           QQ PGAGGD  NAQEEDDD VPELV+GETFEAPAEENR+S
Sbjct: 121 QQAPGAGGDANNAQEEDDDVVPELVDGETFEAPAEENRAS 160

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BLAST of CsGy1G005010 vs. TAIR10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC)

HSP 1 Score: 207.2 bits (526), Expect = 7.4e-54
Identity = 125/157 (79.62%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQVPGAGGDPKNAQE--EDDDVPELVEGETFEAPAEE 156
           +Q PGAG  P   QE      VP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATE 157

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BLAST of CsGy1G005010 vs. TAIR10
Match: AT1G17880.1 (basic transcription factor 3)

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-51
Identity = 111/157 (70.70%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGTVRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 156
           +Q  G G       +E    DVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEXXXXDVPELV-GETFETAAEE 156

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BLAST of CsGy1G005010 vs. Swiss-Prot
Match: sp|Q9CAT7|BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-52
Identity = 125/157 (79.62%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQVPGAGGDPKNAQE--EDDDVPELVEGETFEAPAEE 156
           +Q PGAG  P   QE      VP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATE 157

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BLAST of CsGy1G005010 vs. Swiss-Prot
Match: sp|Q9SMW7|BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-50
Identity = 111/157 (70.70%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGTVRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQVPGAGGDPKNAQEE--DDDVPELVEGETFEAPAEE 156
           +Q  G G       +E    DVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEXXXXDVPELV-GETFETAAEE 156

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BLAST of CsGy1G005010 vs. Swiss-Prot
Match: sp|Q4KLF5|BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-33
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 156
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

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BLAST of CsGy1G005010 vs. Swiss-Prot
Match: sp|Q5M8V0|BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-33
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQV-PGAGGDPKNAQEEDDDVPELVEGETFEAPAEE 156
            +QV       P++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

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BLAST of CsGy1G005010 vs. Swiss-Prot
Match: sp|Q96K17|BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens OX=9606 GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-33
Identity = 77/147 (52.38%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQV-PGAGGDPKNAQEEDDDVPELVE 146
            +QV       P++  EEDDDVP+LVE
Sbjct: 121 PRQVLDSKAPKPEDIDEEDDDVPDLVE 147

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BLAST of CsGy1G005010 vs. TrEMBL
Match: tr|A0A0A0LPY4|A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.2e-71
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CsGy1G005010 vs. TrEMBL
Match: tr|A0A1S3AX23|A0A1S3AX23_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+R XXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRXXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

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BLAST of CsGy1G005010 vs. TrEMBL
Match: tr|A0A1S3AWM8|A0A1S3AWM8_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+R XXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRXXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQVPGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CsGy1G005010 vs. TrEMBL
Match: tr|V4TML2|V4TML2_9ROSI (Nascent polypeptide-associated complex subunit beta OS=Citrus clementina OX=85681 GN=CICLE_v10022594mg PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.1e-55
Identity = 132/156 (84.62%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+ E+L K+A AVRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 QQVPGAG-GDPKNAQEEDDDVPELVEGETFEAPAEE 156
           +Q P AG G P   +++DD+VPELV GETFEA AEE
Sbjct: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156

[Close]

BLAST of CsGy1G005010 vs. TrEMBL
Match: tr|A0A2H5QHD0|A0A2H5QHD0_CITUN (Nascent polypeptide-associated complex subunit beta OS=Citrus unshiu OX=55188 GN=CUMW_230090 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.1e-55
Identity = 132/156 (84.62%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+ E+L K+A AVRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQF+
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 QQVPGAG-GDPKNAQEEDDDVPELVEGETFEAPAEE 156
           +Q P AG G P   +++DD+VPELV GETFEA AEE
Sbjct: 121 KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEE 156

The following BLAST results are available for this feature:

BLAST of CsGy1G005010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137393.1	1.9e-71	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]...	[more]
XP_004137394.1	1.9e-71	100.00	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
XP_008438287.1	1.8e-69	98.11	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [...	[more]
XP_008438373.1	1.8e-69	98.11	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [...	[more]
XP_022137240.1	2.6e-65	94.38	nascent polypeptide-associated complex subunit beta-like [Momordica charantia]	[more]

BLAST of CsGy1G005010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	7.4e-54	79.62	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	2.6e-51	70.70	basic transcription factor 3	[more]

BLAST of CsGy1G005010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CAT7\|BTF3L_ARATH	1.3e-52	79.62	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9SMW7\|BTF3_ARATH	4.7e-50	70.70	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
sp\|Q4KLF5\|BT3L4_XENLA	2.4e-33	51.59	Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=...	[more]
sp\|Q5M8V0\|BT3L4_XENTR	2.4e-33	51.59	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2...	[more]
sp\|Q96K17\|BT3L4_HUMAN	3.1e-33	52.38	Transcription factor BTF3 homolog 4 OS=Homo sapiens OX=9606 GN=BTF3L4 PE=1 SV=1	[more]

BLAST of CsGy1G005010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPY4\|A0A0A0LPY4_CUCSA	1.2e-71	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 G...	[more]
tr\|A0A1S3AX23\|A0A1S3AX23_CUCME	1.2e-69	98.11	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S3AWM8\|A0A1S3AWM8_CUCME	1.2e-69	98.11	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|V4TML2\|V4TML2_9ROSI	8.1e-55	84.62	Nascent polypeptide-associated complex subunit beta OS=Citrus clementina OX=8568...	[more]
tr\|A0A2H5QHD0\|A0A2H5QHD0_CITUN	8.1e-55	84.62	Nascent polypeptide-associated complex subunit beta OS=Citrus unshiu OX=55188 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038187	NAC_A/B_dom_sf
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005010.1	CsGy1G005010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 1.3E-22 score: 91.2
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 1.2E-20 score: 73.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 16.247
IPR038187	NAC A/B domain superfamily	GENE3D	G3DSA:2.20.70.30		coord: 48..104 e-value: 2.4E-28 score: 99.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..149
None	No IPR available	PANTHER	PTHR10351:SF47	SUBFAMILY NOT NAMED	coord: 1..156
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G005010	Cla018640	Watermelon (97103) v1	cgybwmB064
CsGy1G005010	Csa1G031860	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G005010	MELO3C001952	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G005010	ClCG04G012560	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G005010	CSPI01G05240	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G005010	CmaCh01G007630	Cucurbita maxima (Rimu)	cgybcmaB105
CsGy1G005010	CmaCh13G011080	Cucurbita maxima (Rimu)	cgybcmaB064
CsGy1G005010	CmoCh01G007980	Cucurbita moschata (Rifu)	cgybcmoB099
CsGy1G005010	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G005010	Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cgybcpeB098
CsGy1G005010	Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cgybcpeB081
CsGy1G005010	MELO3C001952.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G005010	CsaV3_1G005140	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G005010	Cla97C04G079550	Watermelon (97103) v2	cgybwmbB053
CsGy1G005010	Bhi08G001617	Wax gourd	cgybwgoB031
CsGy1G005010	Carg04730	Silver-seed gourd	carcgybB0395
CsGy1G005010	Carg06975	Silver-seed gourd	carcgybB0526

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G005010	Cucurbita moschata (Rifu)	cgybcmoB060