Cp4.1LG20g00510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g00510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cp4.1LG20 : 201943 .. 206230 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATGAACTATGGGAAGGAGTGCGTAGGCATAAGTTAGTTGCCTGCTTGACATGATATGCTGAGTTAGACAAGGTAATATATAAGTATATTGGTAAGAAACCGAACTTTCATTGAAAAAGAATGAAATGAACGCAAGGGCATACAAAAAAAGTTCAACAAAAAGAGTGAGCTCAAAAGTAACAACAAAAAAAAGAGGCTCTAATCCAACAAAATCAAACCAAGATCATAGTTACTTATGCTGTTATTTGAAGTCAGATTAGCAGTAATACTCTTCACTGGGTGCCTGATCTGATATCTACTTCCCCCAGATCCTTTCTACTATTCTCACTCTTGGGGTTCTAATCCCTTTCTGGGAGAACAGCTGCCAGTTTTACCTGTATGGATAACTGGACTGCAAACTGCACCGCAGTGATTTGTGCAATTAGCATATCATATTTCTATGTTTGAAAAATGGTTCATGTAAATTACAAGAAAAATACTTCTTTTTCTTTTTTGCGTAGTCTTCAAAAAAGGGAATGCAAATATGGCTACATTTGATGGTATACTAATCGTTATGTAGGTTCAAATTAATCAGTGAATTTTGCCGAGGACAACCGGTTTACTCGTGATCTTAATCAGTGAATTTTAATTTGCCTTAACGCTCATAAACGTAGTTGTTTGTTGCAGGCATTGGTCATAATGGAACTACTGAGATTCCAGTGATTACTTGAGACGATGCTCATCATGCTCCACTAAGCAACAGGTTCAACACTACGCCTTAGATTTCTAGTTTTCATGGTATTGTGATCTAATATAGACTCATCCAGCCATTACCACCGAAAAAATGTTGGGACGGCTTAATCTTTGGTTGTTAGTTTAGTTTTTGTAGAAAAGAATGGTTTATGGATTATTCCAACAATTCAGGAACCAAATAATTTAGCATGGATTGAATTATAATTCTTGACTGCCACAAAAATCATTATAATAGTGTTAAAGTTAGGGAAGAGGGAAAGGCTGTAAAGGAATATGGGATTTCTCTTGATTCATTTTCTATTTTTGAACTTCTGTTCATCAATTTCAGCTTATGAGCTTCTAAAATATCAATCTTTTAGCCTCTGAACTTGTACTTTATACCCATTTTGTAAGCTAATATCAGAATCTCAGTCCTAACGACATTTTTGACACCATCTCTAACATATAAAGTTTGTAATTGCTTGGAAGTTGTTCTTAGAAGCCATTTCAACCCAAACTATACTTAATTATTTTCAAACTACTATTATACCTAATTGAGAAAACATTGGCCGACTTTTAATAGCGGTTAATTAGCCCAATTGCTCTTAAATTATTCGAGTGCTTTCAACTCTATGACAAGTTTCAAGTTGCCTCAATTATGTTCAAAATTAAGCAGAGTTACCTGGAAAAAAAAATTAAAGCCATATTGGGCCAACATTATTTTAAGGTAGGCCCAACGTAACTTAACTCGATCTAACTCGATTATGTTTTAGCCCATTGCGGCCCACTGGGATTATCTTTATTTATTTAATTTGGCAAATGCGTTGCTTCTTTCTGGGAGAATGTAAATCAAATAACCAAGCTGTACCAATTAGAATCAGCCACGTCTGTATTTGAAATCGTATATCGACCGTCGGATCAAGATGAATTTTTGTTTTTCGTGGATCGGTTCGTAGCTTTAGCAACCTCTTATTATTATATGGAGCGAAAGGGCTAAAACCATCTGTTAGCGCCGTCCGGGAGTCTGCCCTTCTTCCGCCAGCCTCTGCGTAATCCCCCATCTCCAAAACCCTAGCCCAAAGGTAATTCCATCCGTCCTCTTCGCCCTTCATCTCTCTATTTCTTCTTTAATCTCTTCTCCCGCTTGGTTCTTAGATTCTATTGTCGGGACTTTTTCAATCTTCACTCATACTTGGGCTTGTAAGTTCAGACGAAGTTGTTAGAGATTCGTTAATCCCAGTTCTCTATCTTCTAGCACGCTACGGTTTTCCTATCGTTTTTTATCGTCCTCTTCTCCTGCAAGATTTTGTTCTTGTTCTGCATTTAGGTCCCATTTCTTAACCGAAATTAAGTCAATAGTGTACGTTCGTTTTTACCTCATTCTTATATAATTAGGAATTCTAATGGAACTTAACGACATTTTGATTGCTGCATTTCGTTTTGGGTATATTTTTTTGATTAAAGGATGTGTGTCTGCTCAGGACAGGGTCATTACTCAGCACTCTTAAAAAGGTTTATGCTGTTTGAATCTCATTTTGGTTATTTTGTTGGTGCCGTATCTTCTTCGATTCTCATCTTTTAGTAACTGATAGTGATTAAAGAAAAAAAATTGTCTATAAAATATTAACTGGGTGTTTCTCCCGCTTTGGTGGCTATCTGATCGTGCTCGTAGCTTTTGGATTTTACTTATATTATATAAGCATTGTTTGAAATATTCAGTTCTTGTTAAACCCGAACTCCCCCTTGTGCGTCTCTATGACTTACTTATATTGGCCTAGTCTAATTCGGTTTTGATGTCATGCAGATGGATCAGGAGAGGCTTAGGAAGATTGCCAGTGCGGTTCGCACCGGTGGAAAGGGTACCGTGAGAAGGTAATTCTGTAATATTTTATTTTTCCCATTCCATTGTTCAGCACATAAGGTGATGTGGTTGAAGTTTGGATTTCTGACCTTCATTGTGAGGATAATGAACTGCCTGAAATTGTTAACCAACCTTTTATATATCATATGTACCTGGATTCTTTGCCTAAAAATTTAATGGATCATTATAACCATCCCAAATTTCAATTTTGCACTGTGGTAAGAATTTAAGCTCTCTTGAAGTTTAATATATTCATATTAATTTAAATTTATTTTTTTCAAATACAAATTAAAATTGAGGAAATTAATAGGAATCTCAGCTAATCCATAATTTATGCCACTGTTGAAACGTCTAGCTCGTTGTTTTGCTCTGACCTTATTTGTCTGACCTGATGATTTTTTAAACTGAAGTCTTTTTAAGACCTCCAGAAGGTGATGCAATAATTACAACATCTTGGTTAAATTATGGTAATTTGCACTTGATAAGTCTTTCCGTGTCATTCACATCCCACTGTCTTGTATTTGTCAAGAAGAAGAAAAAAAAAAAAGAGTATAATTTCAATTGTCGTAGTCTTTCTGTTATTTCTTCAATGAAATTACCTAAAGACGTTACCTTGTTATTCCATTGGTTGGTTTTTTATTTTCAAACAAATGCCCTTGATAATAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCCATTGAGGAGGTCAACATTTTCAAGGACGATGTGGTTATCCAATTCAACAACCCGAAGGGTAAATTTTATTTGTCAATTTATTGTACTTCCATCTTATTGCTTCACATTCTTGGATGACTCGTAACATTATTTTTTAACTTATTTCCTGTCCAGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAGTACGTATCTCTGCTAAACTATGCTGTAAATCTAATAACACAATTTTATTTTTTCCATTGCTTTAACATAAATTGACATACCGGACAAACCATTTGAGGCATTTTGTGGGGAATACTAGTACTTCTTCGAAAGAATGGTTTCTTGTTTTGGGCAATTGGATCAGGGCTACAGGAAAAGAATTTTCTTCGACCGTGTCAGATCAATCAGTTTTAACTGCATTTGATTAGTTTTCATGGTATCTATTTCATTAAGGCTGCATCTTCTTACCAGCCTTCAAAGTATGTCTTGCTCTTAAAAATCATTTGGTTTGTACAATAGATCTTGTTGTCTACTTGTGCTGACGTTAATTGTCTGTCATGCATTTGATGGTGCTCAATTTTTCTTGGTTGAAATGGTCCTCCGTTTGTCTTTTTATCTAATAATTTGTGCGTTTCCCAACTACAGAATTGCAGGACATCTTGCCTGGTATCATCAATCANTTTTTTTTTTTTTTTTTTTTTTCTTCTTATTGCTAGAGCTCCATTGGTTTGAACTTGTAAATAATGTTTCTGTTATTACTACTACCCTCAGGGCCAGATAATTTGGACAACTTGCGAAAATTAGCTGAGCAGTTCAAACAGCAAGTACCTGGAGCAGGTGTTGATGTTGATGCAAAGAATGTAGAAGAGGATGAGGATGACGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCCGCAGAAGAAAATCGTTGTTCTTAG

mRNA sequence

ATGCCTATGAACTATGGGAAGGAGTGCGTAGGCATAAGCATTGGTCATAATGGAACTACTGAGATTCCAATGGATCAGGAGAGGCTTAGGAAGATTGCCAGTGCGGTTCGCACCGGTGGAAAGGGTACCGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCCATTGAGGAGGTCAACATTTTCAAGGACGATGTGGTTATCCAATTCAACAACCCGAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAGGCCAGATAATTTGGACAACTTGCGAAAATTAGCTGAGCAGTTCAAACAGCAAGTACCTGGAGCAGGTGTTGATGTTGATGCAAAGAATGTAGAAGAGGATGAGGATGACGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCCGCAGAAGAAAATCGTTGTTCTTAG

Coding sequence (CDS)

ATGCCTATGAACTATGGGAAGGAGTGCGTAGGCATAAGCATTGGTCATAATGGAACTACTGAGATTCCAATGGATCAGGAGAGGCTTAGGAAGATTGCCAGTGCGGTTCGCACCGGTGGAAAGGGTACCGTGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCCATTGAGGAGGTCAACATTTTCAAGGACGATGTGGTTATCCAATTCAACAACCCGAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATAAAGAGGCCAGATAATTTGGACAACTTGCGAAAATTAGCTGAGCAGTTCAAACAGCAAGTACCTGGAGCAGGTGTTGATGTTGATGCAAAGAATGTAGAAGAGGATGAGGATGACGTTCCAGAACTTGTTGATGGGGAGACTTTTGAAGCTCCCGCAGAAGAAAATCGTTGTTCTTAG

Protein sequence

MPMNYGKECVGISIGHNGTTEIPMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQIKRPDNLDNLRKLAEQFKQQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS

Homology

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BLAST of Cp4.1LG20g00510 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-53
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQF NPKVQASIAANTWVVSG+PQ K+             PDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 144 QQVPGAGVDVDAK-NVEEDEDDVPELVDGETFEAPAEE 168
           +Q PGAG DV A    E+D+DDVP+LV GETFE PA E
Sbjct: 121 KQAPGAG-DVPATIQEEDDDDDVPDLVVGETFETPATE 157

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BLAST of Cp4.1LG20g00510 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-52
Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQF NPKVQASIAANTWVVSGSPQ K+             PDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEE 168
           +Q  G G    A   EED+DDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

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BLAST of Cp4.1LG20g00510 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 84  KDD-VVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQF 143
           KDD  VI FNNPKVQAS++ANT+ ++G  ++K+              D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 144 KQQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEE 168
            +QV  +      +++EE++DDVPELV G   EA   E
Sbjct: 121 PRQVLDSKAS-KPEDIEEEDDDVPELV-GNFDEASKNE 156

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BLAST of Cp4.1LG20g00510 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 81/158 (51.27%), Postives = 108/158 (68.35%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 84  KDD-VVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQF 143
           KDD  VI FNNPKVQAS++ANT+ ++G  ++K+              D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 144 KQQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEE 168
            +QV  +      +++EE++DDVPELV G   EA   E
Sbjct: 121 PRQVLDSKAS-KPEDIEEEDDDVPELV-GNFDEASKNE 156

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BLAST of Cp4.1LG20g00510 vs. Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-30
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 84  KDD-VVIQFNNPKVQASIAANTWVVSGSPQIK-------------RPDNLDNLRKLAEQF 143
           KDD  VI FNNPKVQAS++ANT+ ++G  + K               D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 144 KQQVPGAGVDVDAKNVEEDEDDVPELVD 158
            +QV  +      ++++E+EDDVP+LV+
Sbjct: 121 PRQVLDSKTP-KPEDIDEEEDDVPDLVE 147

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BLAST of Cp4.1LG20g00510 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.6e-63
Identity = 136/161 (84.47%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQFNNPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QQVPGAG   D KN +E++DDVPELV+GETFEAPAEENR S
Sbjct: 125 QQVPGAG--GDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

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BLAST of Cp4.1LG20g00510 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 122/166 (73.49%), Postives = 135/166 (81.33%), Query Frame = 1


Query: 21  EIPMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 80
           E PMD  +L+K+A AVRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV
Sbjct: 74  EAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 133

Query: 81  NIFKDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAE 140
           NIFKDDVVIQF NPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAE
Sbjct: 134 NIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAE 193

Query: 141 QFKQQVP--GAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QF++Q P  GAG    A N E+D+DDVP+LV+G+TFEA AEE + S
Sbjct: 194 QFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

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BLAST of Cp4.1LG20g00510 vs. TrEMBL
Match: A0A0D9VNG9_9ORYZ (Nascent polypeptide-associated complex subunit beta OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.0e-55
Identity = 112/146 (76.71%), Postives = 128/146 (87.67%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M+ ++L+K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKR+GVN IP IEEVNIF
Sbjct: 1   MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKRPDNLDNLRKLAEQFKQQVPGAGVDVDAK 143
           KDDVVIQF NPKVQASIAANTWVVSG+PQ K PDNLDNLR+LAEQF++QVPGA     A 
Sbjct: 61  KDDVVIQFQNPKVQASIAANTWVVSGTPQTKSPDNLDNLRRLAEQFQKQVPGAEAGASAG 120

Query: 144 NVEEDEDDVPELVDGETFEAPAEENR 170
           N ++D+DDVPELV GETFE  AEE +
Sbjct: 121 NAQDDDDDVPELVPGETFEEAAEEKK 146

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BLAST of Cp4.1LG20g00510 vs. TrEMBL
Match: A0A0D3FCT4_9ORYZ (Nascent polypeptide-associated complex subunit beta OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.9e-54
Identity = 111/144 (77.08%), Postives = 126/144 (87.50%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M+ ++L+K+A AVRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKR+GVN IP IEEVNIF
Sbjct: 717 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 776

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKRPDNLDNLRKLAEQFKQQVPGAGVDVDAK 143
           KDDVVIQF NPKVQASI ANTWVVSG+PQ KRPDNLDNLR+LAEQF++QVP A     A 
Sbjct: 777 KDDVVIQFQNPKVQASIGANTWVVSGTPQTKRPDNLDNLRRLAEQFQKQVPSAEAGASAG 836

Query: 144 NVEEDEDDVPELVDGETFEAPAEE 168
           N ++D+DDVPELV GETFE  AEE
Sbjct: 837 NAQDDDDDVPELVPGETFEEAAEE 860

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BLAST of Cp4.1LG20g00510 vs. TrEMBL
Match: A0A059A4Q1_EUCGR (Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_K02308 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.4e-53
Identity = 119/162 (73.46%), Postives = 133/162 (82.10%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M++ERL K+A +VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 73  MNRERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 132

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQF NPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQF+
Sbjct: 133 KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 192

Query: 144 QQVPGAGVDVDAKNVEEDEDD-VPELVDGETFEAPAEENRCS 172
           +QVPGA     A  +++D+DD VPELV GETFEA AEE + +
Sbjct: 193 KQVPGAATGSGATGMQDDDDDEVPELVPGETFEAAAEEGQAT 234

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BLAST of Cp4.1LG20g00510 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-54
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQF NPKVQASIAANTWVVSG+PQ K+             PDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 144 QQVPGAGVDVDAK-NVEEDEDDVPELVDGETFEAPAEE 168
           +Q PGAG DV A    E+D+DDVP+LV GETFE PA E
Sbjct: 121 KQAPGAG-DVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cp4.1LG20g00510 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-53
Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           M++E+L K+A+ VRTGGKGTVRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQF NPKVQASIAANTWVVSGSPQ K+             PDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEE 168
           +Q  G G    A   EED+DDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cp4.1LG20g00510 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 136/161 (84.47%), Postives = 142/161 (88.20%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQFNNPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QQVPGAG   DAKN +E++DDVPELV+GETFEAPAEENR S
Sbjct: 125 QQVPGAG--GDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cp4.1LG20g00510 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 136/161 (84.47%), Postives = 142/161 (88.20%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQFNNPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QQVPGAG   DAKN +E++DDVPELV+GETFEAPAEENR S
Sbjct: 121 QQVPGAG--GDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cp4.1LG20g00510 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 5.1e-63
Identity = 136/161 (84.47%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQFNNPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QQVPGAG   D KN +E++DDVPELV+GETFEAPAEENR S
Sbjct: 125 QQVPGAG--GDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Cp4.1LG20g00510 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 5.1e-63
Identity = 136/161 (84.47%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 24  MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 83
           MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 84  KDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAEQFK 143
           KDDVVIQFNNPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 144 QQVPGAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QQVPGAG   D KN +E++DDVPELV+GETFEAPAEENR S
Sbjct: 121 QQVPGAG--GDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Cp4.1LG20g00510 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 122/166 (73.49%), Postives = 135/166 (81.33%), Query Frame = 1


Query: 21  EIPMDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 80
           E PMD  +L+K+A AVRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV
Sbjct: 74  EAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEV 133

Query: 81  NIFKDDVVIQFNNPKVQASIAANTWVVSGSPQIKR-------------PDNLDNLRKLAE 140
           NIFKDDVVIQF NPKVQASIAANTWVVSGSPQ K+             PDNLDNLRKLAE
Sbjct: 134 NIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAE 193

Query: 141 QFKQQVP--GAGVDVDAKNVEEDEDDVPELVDGETFEAPAEENRCS 172
           QF++Q P  GAG    A N E+D+DDVP+LV+G+TFEA AEE + S
Sbjct: 194 QFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g00510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	2.8e-53	73.42	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	7.0e-52	72.61	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_XENLA	4.0e-31	51.27	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENTR	4.0e-31	51.27	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_BOVIN	3.4e-30	51.35	Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1	[more]

BLAST of Cp4.1LG20g00510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	3.6e-63	84.47	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0A0LTU8_CUCSA	1.6e-55	73.49	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0D9VNG9_9ORYZ	8.0e-55	76.71	Nascent polypeptide-associated complex subunit beta OS=Leersia perrieri PE=3 SV=...	[more]
A0A0D3FCT4_9ORYZ	8.9e-54	77.08	Nascent polypeptide-associated complex subunit beta OS=Oryza barthii PE=3 SV=1	[more]
A0A059A4Q1_EUCGR	3.4e-53	73.46	Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUG...	[more]

BLAST of Cp4.1LG20g00510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	1.6e-54	73.42	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	3.9e-53	72.61	basic transcription factor 3	[more]

BLAST of Cp4.1LG20g00510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066313\|ref\|XP_008438287.1\|	3.0e-63	84.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|659066315\|ref\|XP_008438373.1\|	3.0e-63	84.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|449439237\|ref\|XP_004137393.1\|	5.1e-63	84.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|449439239\|ref\|XP_004137394.1\|	5.1e-63	84.47	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|700209106\|gb\|KGN64202.1\|	2.3e-55	73.49	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g00510.1	Cp4.1LG20g00510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 59..114 score: 3.1
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 59..114 score: 1.4
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 56..120 score: 15
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 21..167 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g00510	Cucsa.112440	Cucumber (Gy14) v1	cgycpeB0259
Cp4.1LG20g00510	CmaCh13G011080	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g00510	CmaCh01G007630	Cucurbita maxima (Rimu)	cmacpeB485
Cp4.1LG20g00510	CmoCh01G007980	Cucurbita moschata (Rifu)	cmocpeB444
Cp4.1LG20g00510	Cla018640	Watermelon (97103) v1	cpewmB522
Cp4.1LG20g00510	Csa1G031860	Cucumber (Chinese Long) v2	cpecuB517
Cp4.1LG20g00510	MELO3C001952	Melon (DHL92) v3.5.1	cpemeB471
Cp4.1LG20g00510	ClCG04G012560	Watermelon (Charleston Gray)	cpewcgB470
Cp4.1LG20g00510	CSPI01G05240	Wild cucumber (PI 183967)	cpecpiB519
Cp4.1LG20g00510	Lsi02G000380	Bottle gourd (USVL1VR-Ls)	cpelsiB424
Cp4.1LG20g00510	MELO3C001952.2	Melon (DHL92) v3.6.1	cpemedB553
Cp4.1LG20g00510	CsaV3_1G005140	Cucumber (Chinese Long) v3	cpecucB0636
Cp4.1LG20g00510	Bhi08G001617	Wax gourd	cpewgoB0653
Cp4.1LG20g00510	CsGy1G005010	Cucumber (Gy14) v2	cgybcpeB081
Cp4.1LG20g00510	Carg06975	Silver-seed gourd	carcpeB0736
Cp4.1LG20g00510	Carg04730	Silver-seed gourd	carcpeB0544

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g00510	Cp4.1LG02g10110	Cucurbita pepo (Zucchini)	cpecpeB431

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cpecpeB433
Cp4.1LG20g00510	Cucurbita pepo (Zucchini)	cpecpeB442
Cp4.1LG20g00510	Cucurbita maxima (Rimu)	cmacpeB484
Cp4.1LG20g00510	Cucurbita moschata (Rifu)	cmocpeB201