CU102516 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU102516
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3395999 .. 3397758 (+)
Sequence length	461

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTTCGATGGTTGTCCAGTATGTCAAATTATATTCAAGCAATGGAAAGAAGACAATCGTGTTATAAGATTTACAACATGGTGCAGAGATACATACTCTTTGTTTGAGGAGAACCACTAACGACCCACGTGTTTGCAGCAATAGATGCTTGAACCTTTGGGTTGTTGAATTGGATAACCACATCATCCTTGAAAATGTTGACCTCCTCAATAGCAGGAATGGCATTCACCCCAATTCTCTTTAAAGTACTCTGGAGCCTTTTGTCATCTAGTTTGTAGTGGTCTTATGAACTGCCTTCTTCTTTCTTCTCACAGTACCCTTTCCACCAGTGCGAACGGCACTGGCAATCTTTCTAAGCCTCTCCTGATCCATCTTTGGGCTAGGGTTTTGGAGTTAGGGGATAAGACTGAGGGTCGCGGAAGAAAAGACGAAAACTACCCGGACGGCGCTAACCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	3

Homology

[Close]

BLAST of CU102516 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-23
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 35  DDKRLQSTLKRIGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKL 93

Query: 151  210
           
Sbjct: 95   93

Query: 211  268
           
Sbjct: 155  93

[Close]

BLAST of CU102516 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-23
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKR+GVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTK +
Sbjct: 35  DDKRLQSTLKRVGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKL 93

Query: 151  210
           
Sbjct: 95   93

Query: 211  268
           
Sbjct: 155  93

[Close]

BLAST of CU102516 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDK+LQS+LK++ VN I  IEEVN+ KDD  VI FNNPKVQAS++ANT+ ++G  +TK +
Sbjct: 35  DDKKLQSSLKKLVVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQL 94

Query: 151  210
           
Sbjct: 95   94

Query: 211  268
           
Sbjct: 155  94

[Close]

BLAST of CU102516 vs. Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDK+LQS+LK++ VN I  IEEVN+ KDD  VI FNNPKVQAS++ANT+ ++G  + K +
Sbjct: 35  DDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQI 94

Query: 151  210
           
Sbjct: 95   94

Query: 211  268
           
Sbjct: 155  94

[Close]

BLAST of CU102516 vs. Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDK+LQS+LK++ VN I  IEEVN+ KDD  VI FNNPKVQAS++ANT+ ++G  + K +
Sbjct: 35  DDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQI 94

Query: 151  210
           
Sbjct: 95   94

Query: 211  268
           
Sbjct: 155  94

[Close]

BLAST of CU102516 vs. TrEMBL
Match: A0A0A0LPY4_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTK +
Sbjct: 39  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKL 97

Query: 151  210
           
Sbjct: 99   97

Query: 211  268
           
Sbjct: 159  97

[Close]

BLAST of CU102516 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 66/114 (57.89%), Postives = 70/114 (61.40%), Query Frame = -3


Query: 91  DCQCRSHWWKGYCEKKEEGSS*DHYKL----------------------------DDKRL 150
           DC+ RS        KK + +  DH KL                            DDKRL
Sbjct: 56  DCEFRSEGKNSLVFKKRDEAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRL 115

Query: 151 QSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 210
           QSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 116 QSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKL 169

Query: 211  270
           
Sbjct: 176  169

Query: 271  330
           
Sbjct: 236  169

Query: 331  349
           
Sbjct: 296  169

[Close]

BLAST of CU102516 vs. TrEMBL
Match: A0A0S3SDP6_PHAAN (Nascent polypeptide-associated complex subunit beta OS=Vigna angularis var. angularis GN=Vigan.06G226000 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = -3


Query: 91  LDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           +DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 34  IDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKL 93

Query: 151  210
           
Sbjct: 94   93

Query: 211  270
           
Sbjct: 154  93

[Close]

BLAST of CU102516 vs. TrEMBL
Match: A0A0L9V773_PHAAN (Nascent polypeptide-associated complex subunit beta OS=Phaseolus angularis GN=LR48_Vigan08g175200 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = -3


Query: 91  LDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           +DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 26  IDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKL 85

Query: 151  210
           
Sbjct: 86   85

Query: 211  270
           
Sbjct: 146  85

[Close]

BLAST of CU102516 vs. TrEMBL
Match: V7AI72_PHAVU (Nascent polypeptide-associated complex subunit beta OS=Phaseolus vulgaris GN=PHAVU_011G041900g PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-22
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 35  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKL 93

Query: 151  210
           
Sbjct: 95   93

Query: 211  268
           
Sbjct: 155  93

[Close]

BLAST of CU102516 vs. NCBI nr
Match: gi|449439237|ref|XP_004137393.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTK +
Sbjct: 39  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKL 97

Query: 151  210
           
Sbjct: 99   97

Query: 211  268
           
Sbjct: 159  97

[Close]

BLAST of CU102516 vs. NCBI nr
Match: gi|659066315|ref|XP_008438373.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTK +
Sbjct: 35  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKL 93

Query: 151  210
           
Sbjct: 95   93

Query: 211  268
           
Sbjct: 155  93

[Close]

BLAST of CU102516 vs. NCBI nr
Match: gi|449439239|ref|XP_004137394.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTK +
Sbjct: 35  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKL 93

Query: 151  210
           
Sbjct: 95   93

Query: 211  268
           
Sbjct: 155  93

[Close]

BLAST of CU102516 vs. NCBI nr
Match: gi|659066313|ref|XP_008438287.1| (PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -3


Query: 91  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 150
           DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTK +
Sbjct: 39  DDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKL 97

Query: 151  210
           
Sbjct: 99   97

Query: 211  268
           
Sbjct: 159  97

[Close]

BLAST of CU102516 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 66/114 (57.89%), Postives = 70/114 (61.40%), Query Frame = -3


Query: 91  DCQCRSHWWKGYCEKKEEGSS*DHYKL----------------------------DDKRL 150
           DC+ RS        KK + +  DH KL                            DDKRL
Sbjct: 56  DCEFRSEGKNSLVFKKRDEAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRL 115

Query: 151 QSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKSM 210
           QSTLKRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGSPQTK +
Sbjct: 116 QSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKL 169

Query: 211  270
           
Sbjct: 176  169

Query: 271  330
           
Sbjct: 236  169

Query: 331  349
           
Sbjct: 296  169

The following BLAST results are available for this feature:

BLAST of CU102516 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3_ARATH	1.2e-23	93.22	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BTF3L_ARATH	3.6e-23	89.83	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BT3L4_DANRE	1.7e-12	60.00	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENTR	3.7e-12	58.33	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1	[more]
BT3L4_XENLA	3.7e-12	58.33	Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1	[more]

BLAST of CU102516 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPY4_CUCSA	5.5e-23	96.61	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0A0LTU8_CUCSA	1.6e-22	57.89	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0S3SDP6_PHAAN	3.6e-22	93.33	Nascent polypeptide-associated complex subunit beta OS=Vigna angularis var. angu...	[more]
A0A0L9V773_PHAAN	3.6e-22	93.33	Nascent polypeptide-associated complex subunit beta OS=Phaseolus angularis GN=LR...	[more]
V7AI72_PHAVU	6.1e-22	94.92	Nascent polypeptide-associated complex subunit beta OS=Phaseolus vulgaris GN=PHA...	[more]

BLAST of CU102516 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439237\|ref\|XP_004137393.1\|	4.7e-23	96.61	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis sativus]	[more]
gi\|659066315\|ref\|XP_008438373.1\|	4.7e-23	96.61	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis melo]	[more]
gi\|449439239\|ref\|XP_004137394.1\|	4.7e-23	96.61	PREDICTED: transcription factor BTF3 homolog 4-like isoform X2 [Cucumis sativus]	[more]
gi\|659066313\|ref\|XP_008438287.1\|	4.7e-23	96.61	PREDICTED: transcription factor BTF3 homolog 4-like isoform X1 [Cucumis melo]	[more]
gi\|700209106\|gb\|KGN64202.1\|	1.4e-22	57.89	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G031860	Csa1G031860	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OIXCY	FKNP3UI02OIXCY	EST
FKNP3UI02OSN0J	FKNP3UI02OSN0J	EST
G0037591	G0037591	EST
G0047852	G0047852	EST
G0187975	G0187975	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 37..92 score: 4.2
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 37..92 score: 1.3
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 34..98 score: 15
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..94 score: 9.6