CsGy3G017960 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G017960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 14084656 .. 14084907 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

mRNA sequence

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Coding sequence (CDS)

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Protein sequence

MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKFLTPFFQPKLH
Homology
[Close]
BLAST of CsGy3G017960 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

[Close]
BLAST of CsGy3G017960 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 43/70 (61.43%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 6  WRRARNETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRRTE 65
          WRRA          GGSGRQTVRVKA +NA + NGGPDLEDSETKPLYSLF LRT+  T 
Sbjct: 17 WRRAPALAPARNMCGGSGRQTVRVKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTATT 76

Query: 66 QQTTIIAKFL 75
               I K L
Sbjct: 77 TTRRTIDKIL 86

[Close]
BLAST of CsGy3G017960 vs. TrEMBL
Match: tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

The following BLAST results are available for this feature:
BLAST of CsGy3G017960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57486.14.1e-38100.00hypothetical protein Csa_3G198500 [Cucumis sativus][more]
XP_022149327.13.1e-0961.43homeobox protein HAT3.1 isoform X2 [Momordica charantia][more]
BLAST of CsGy3G017960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G017960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G017960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA2.7e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G017960.1CsGy3G017960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..48

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G017960Cla013109Watermelon (97103) v1cgybwmB229
CsGy3G017960Csa3G198500Cucumber (Chinese Long) v2cgybcuB109
CsGy3G017960MELO3C019556Melon (DHL92) v3.5.1cgybmeB210
CsGy3G017960ClCG05G010380Watermelon (Charleston Gray)cgybwcgB214
CsGy3G017960CSPI03G18020Wild cucumber (PI 183967)cgybcpiB110
CsGy3G017960CmoCh16G003530Cucurbita moschata (Rifu)cgybcmoB301
CsGy3G017960Lsi05G002490Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G017960CsaV3_3G018090Cucumber (Chinese Long) v3cgybcucB117
CsGy3G017960Cla97C05G092780Watermelon (97103) v2cgybwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G017960Cucurbita maxima (Rimu)cgybcmaB332
CsGy3G017960Cucurbita maxima (Rimu)cgybcmaB379
CsGy3G017960Cucurbita maxima (Rimu)cgybcmaB410
CsGy3G017960Cucurbita moschata (Rifu)cgybcmoB352
CsGy3G017960Cucurbita moschata (Rifu)cgybcmoB386
CsGy3G017960Cucurbita pepo (Zucchini)cgybcpeB317
CsGy3G017960Cucurbita pepo (Zucchini)cgybcpeB362
CsGy3G017960Cucumber (Chinese Long) v2cgybcuB151
CsGy3G017960Bottle gourd (USVL1VR-Ls)cgyblsiB173
CsGy3G017960Melon (DHL92) v3.5.1cgybmeB160
CsGy3G017960Melon (DHL92) v3.6.1cgybmedB215
CsGy3G017960Watermelon (Charleston Gray)cgybwcgB197
CsGy3G017960Watermelon (97103) v1cgybwmB253
CsGy3G017960Wild cucumber (PI 183967)cgybcpiB153
CsGy3G017960Silver-seed gourdcarcgybB0307
CsGy3G017960Silver-seed gourdcarcgybB0380
CsGy3G017960Wax gourdcgybwgoB271