Lsi05G002490 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 3211997 .. 3213313 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGATAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAGACATGGAAGAACCAAGAACAACAACCACCACCACCACCACCACCACCACCATCGCCAAATTTCTTACTCTTTTCTTCCAAAATCTCCATTAACAAACATCTCCACCGCCTACAAGATCCAAAAACCACCCTCTTTCTCCGACAATACTATGCTCTTCACCAACACCAGGTACATCTTTCCAATAGGTTTTTCCTTTTTCTTTTCTATTACCTTCTTCTATTTCTGCTAGATTCTCTTTGTTTCTTGTAAATTCGCGCGGAAAGGGAAATGGAGTTTCGGAAGCTAATACATTGTCTTGTTCTTTTCTTCAAATGCTTACCTCCTTAATTGCATTTGTTTCTTCTCTTTCCTTTTTCCTACTTTACCGTTTTGTTTGCTTAACTTTCGGAGATAGAGGCGTAATGATTCGGGACTTCTTTTTCTTTTTCTTTTTTTTTTTTCTTTTCCTTCTTTCAACTTGCTGTCTCTCCTTCTTGAAGTATTACAACGGGGACTAACCTTTTATCTTGAAGAATTTCATTGCTAAAACCGATTTTATGAAGTTGAGCTTAGTTTTTTCCCCTTGGAAGCTTTGTTTCACGTAATTGAAGTTATTTGTGAGTTTGGACGTGCAAATTTCTGAGGTAGGAGTTTGAGTGCGAGCCAACCTCAGCTGAGGTTATGGCTGGCCATTTGTAACTCCCGTCGAGCCTCGCCATCCTTTTTTTTTTTTTCCCCTTTTGCAATGTAATGTTCTTAAATTATGAATTTAAATTTTTAGAAATGGAGTTGGGAGTACGAAATTTCGTGGTAGGATTACACTTATGTTAATACGTACGTTCCGTTTCTCAATTGCAGACCCACTAGATATTCAAACTCTTGAACATCATTTTTTTTTTTTGGTGTTTGCTTGTTTTAAATAATGGAATTTAATACCCATCTACAGTTCGAGGTGGTTACTTTTTTTTTTTTTTTTTTGTAGAGTTATATACTGATATCTTCCAATTTCATTCCCACAACTTGGATAGTGTTGAATGGCTATTTTGGTCACCGTTATGTGTAATGAGAATTGACATTATGAATACTGGAAAGGGAACAAATTGGATATTAACATGTGTTGTTACACTATAGTATTCAATGGATTTGCTGATTAGTACCGTAGACATTCGTTCTTTTAGATGGTCTGATCAGGTTTGAATTGCCGTAG

mRNA sequence

ATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGATAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAGACATGGAAGAACCAAGAACAACAACCACCACCACCACCACCACCACCACCATCGCCAAATTTCTTACTCTTTTCTTCCAAAATCTCCATTAACAAACATCTCCACCGCCTACAAGATCCAAAAACCACCCTCTTTCTCCGACAATACTATGCTCTTCACCAACACCAGAAATGGAGTTGGGAGTACGAAATTTCGTGGTAGGATTACACTTATGTTAATACATGGTCTGATCAGGTTTGAATTGCCGTAG

Coding sequence (CDS)

ATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGATAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAGACATGGAAGAACCAAGAACAACAACCACCACCACCACCACCACCACCACCATCGCCAAATTTCTTACTCTTTTCTTCCAAAATCTCCATTAACAAACATCTCCACCGCCTACAAGATCCAAAAACCACCCTCTTTCTCCGACAATACTATGCTCTTCACCAACACCAGAAATGGAGTTGGGAGTACGAAATTTCGTGGTAGGATTACACTTATGTTAATACATGGTCTGATCAGGTTTGAATTGCCGTAG

Protein sequence

MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTKNNNHHHHHHHHHRQISYSFLPKSPLTNISTAYKIQKPPSFSDNTMLFTNTRNGVGSTKFRGRITLMLIHGLIRFELP

Homology

[Close]

BLAST of Lsi05G002490 vs. TrEMBL
Match: A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 1  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK 50
          +I SGGSGRQTVRVKA QNAQSNGGPDLEDSE KPLYSLFPLR   RT+
Sbjct: 16 VIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTE 64

[Close]

BLAST of Lsi05G002490 vs. NCBI nr
Match: gi|700202353|gb|KGN57486.1| (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-13
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 1  MIMSGGSGRQTVRVKAGQNAQSNGGPDLEDSEIKPLYSLFPLRRHGRTK 50
          +I SGGSGRQTVRVKA QNAQSNGGPDLEDSE KPLYSLFPLR   RT+
Sbjct: 16 VIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTE 64

The following BLAST results are available for this feature:

BLAST of Lsi05G002490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G002490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBT3_CUCSA	4.3e-13	83.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1	[more]

BLAST of Lsi05G002490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G002490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202353\|gb\|KGN57486.1\|	6.1e-13	83.67	hypothetical protein Csa_3G198500 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002490.1	Lsi05G002490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002490	Csa3G198500	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002490	CSPI03G18020	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002490	Cla013109	Watermelon (97103) v1	lsiwmB361
Lsi05G002490	MELO3C019556	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002490	Cla97C05G092780	Watermelon (97103) v2	lsiwmbB329
Lsi05G002490	CsGy3G017960	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002490	CsaV3_3G018090	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002490	Watermelon (97103) v2	lsiwmbB317
Lsi05G002490	Wax gourd	lsiwgoB431
Lsi05G002490	Wax gourd	lsiwgoB468
Lsi05G002490	Bottle gourd (USVL1VR-Ls)	lsilsiB080
Lsi05G002490	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002490	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G002490	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G002490	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G002490	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G002490	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G002490	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G002490	Melon (DHL92) v3.5.1	lsimeB388
Lsi05G002490	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002490	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002490	Melon (DHL92) v3.6.1	lsimedB409
Lsi05G002490	Silver-seed gourd	carlsiB270
Lsi05G002490	Silver-seed gourd	carlsiB346