CsaV3_3G018090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 13856766 .. 13857017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

mRNA sequence

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Coding sequence (CDS)

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Protein sequence

MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKFLTPFFQPKLH
Homology
[Close]
BLAST of CsaV3_3G018090 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

[Close]
BLAST of CsaV3_3G018090 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 43/70 (61.43%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 6  WRRARNETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRRTE 65
          WRRA          GGSGRQTVRVKA +NA + NGGPDLEDSETKPLYSLF LRT+  T 
Sbjct: 17 WRRAPALAPARNMCGGSGRQTVRVKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTATT 76

Query: 66 QQTTIIAKFL 75
               I K L
Sbjct: 77 TTRRTIDKIL 86

[Close]
BLAST of CsaV3_3G018090 vs. TrEMBL
Match: tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57486.12.5e-38100.00hypothetical protein Csa_3G198500 [Cucumis sativus][more]
XP_022149327.12.4e-0961.43homeobox protein HAT3.1 isoform X2 [Momordica charantia][more]
BLAST of CsaV3_3G018090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA1.6e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018090.1CsaV3_3G018090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..48

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018090CSPI03G18020Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018090CmoCh16G003530Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018090CsGy3G017960Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018090Cla013109Watermelon (97103) v1cucwmB252
CsaV3_3G018090MELO3C019556Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018090Lsi05G002490Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018090Cla97C05G092780Watermelon (97103) v2cucwmbB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018090Wax gourdcucwgoB287
CsaV3_3G018090Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018090Silver-seed gourdcarcucB0326
CsaV3_3G018090Silver-seed gourdcarcucB0403
CsaV3_3G018090Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018090Cucumber (Gy14) v1cgycucB123
CsaV3_3G018090Cucumber (Gy14) v1cgycucB137
CsaV3_3G018090Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018090Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018090Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018090Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018090Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018090Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018090Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018090Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018090Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018090Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018090Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018090Watermelon (Charleston Gray)cucwcgB238