CmoCh16G003530 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G003530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1638212 .. 1638431 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAATATGATTATTAGCGGCGGTTGCGGAAGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG

mRNA sequence

ATGCGCAATATGATTATTAGCGGCGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG

Coding sequence (CDS)

ATGCGCAATATGATTATTAGCGGCGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG
Homology
[Close]
BLAST of CmoCh16G003530 vs. TrEMBL
Match: A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 2  RNMIISGGR----------RCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKI 61
          RN+I SGG           + A+SNGGPDLEDSETKPLYSLF L+ + RT +  T IAK 
Sbjct: 14 RNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKF 73

[Close]
BLAST of CmoCh16G003530 vs. NCBI nr
Match: gi|700202353|gb|KGN57486.1| (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 2  RNMIISGGR----------RCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKI 61
          RN+I SGG           + A+SNGGPDLEDSETKPLYSLF L+ + RT +  T IAK 
Sbjct: 14 RNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKF 73

The following BLAST results are available for this feature:
BLAST of CmoCh16G003530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBT3_CUCSA3.9e-0854.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1[more]
BLAST of CmoCh16G003530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202353|gb|KGN57486.1|5.6e-0854.29hypothetical protein Csa_3G198500 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003530.1CmoCh16G003530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G003530CsaV3_3G018090Cucumber (Chinese Long) v3cmocucB0370
CmoCh16G003530CsGy3G017960Cucumber (Gy14) v2cgybcmoB301
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G003530Wax gourdcmowgoB0434
CmoCh16G003530Wax gourdcmowgoB0444
CmoCh16G003530Wax gourdcmowgoB0449
CmoCh16G003530Cucurbita moschata (Rifu)cmocmoB010
CmoCh16G003530Cucurbita moschata (Rifu)cmocmoB096
CmoCh16G003530Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G003530Cucurbita moschata (Rifu)cmocmoB296
CmoCh16G003530Cucumber (Gy14) v1cgycmoB0219
CmoCh16G003530Cucumber (Gy14) v1cgycmoB0625
CmoCh16G003530Cucumber (Gy14) v1cgycmoB0964
CmoCh16G003530Cucurbita maxima (Rimu)cmacmoB038
CmoCh16G003530Cucurbita maxima (Rimu)cmacmoB133
CmoCh16G003530Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G003530Cucurbita maxima (Rimu)cmacmoB502
CmoCh16G003530Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G003530Wild cucumber (PI 183967)cmocpiB315
CmoCh16G003530Wild cucumber (PI 183967)cmocpiB336
CmoCh16G003530Wild cucumber (PI 183967)cmocpiB344
CmoCh16G003530Cucumber (Chinese Long) v2cmocuB307
CmoCh16G003530Cucumber (Chinese Long) v2cmocuB328
CmoCh16G003530Cucumber (Chinese Long) v2cmocuB337
CmoCh16G003530Cucumber (Chinese Long) v2cmocuB338
CmoCh16G003530Melon (DHL92) v3.5.1cmomeB304
CmoCh16G003530Melon (DHL92) v3.5.1cmomeB280
CmoCh16G003530Watermelon (Charleston Gray)cmowcgB291
CmoCh16G003530Watermelon (97103) v1cmowmB311
CmoCh16G003530Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G003530Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G003530Cucurbita pepo (Zucchini)cmocpeB321
CmoCh16G003530Bottle gourd (USVL1VR-Ls)cmolsiB291
CmoCh16G003530Bottle gourd (USVL1VR-Ls)cmolsiB298
CmoCh16G003530Bottle gourd (USVL1VR-Ls)cmolsiB304
CmoCh16G003530Cucumber (Gy14) v2cgybcmoB471
CmoCh16G003530Cucumber (Gy14) v2cgybcmoB732
CmoCh16G003530Melon (DHL92) v3.6.1cmomedB349
CmoCh16G003530Melon (DHL92) v3.6.1cmomedB317
CmoCh16G003530Melon (DHL92) v3.6.1cmomedB341
CmoCh16G003530Silver-seed gourdcarcmoB0258
CmoCh16G003530Silver-seed gourdcarcmoB0402
CmoCh16G003530Silver-seed gourdcarcmoB0509
CmoCh16G003530Cucumber (Chinese Long) v3cmocucB0369
CmoCh16G003530Cucumber (Chinese Long) v3cmocucB0391
CmoCh16G003530Cucumber (Chinese Long) v3cmocucB0408
CmoCh16G003530Cucumber (Chinese Long) v3cmocucB0409
CmoCh16G003530Watermelon (97103) v2cmowmbB332
CmoCh16G003530Watermelon (97103) v2cmowmbB333