Cla013109 (gene) Watermelon (97103) v1

Overview
NameCla013109
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 10939629 .. 10940132 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

mRNA sequence

ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

Coding sequence (CDS)

ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

Protein sequence

MWGSKQCRSCYNGMGVRPKKRKVGPRKKEVENGVKYGDGAQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRTNNNNDDNHHHHHHHHSPSPFLPKTPLTNISTSYKIHKPPSTHTRYLFPIGFFFFFFFFFFFLFFSITFFCFC
Homology
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BLAST of Cla013109 vs. NCBI nr
Match: gi|700202353|gb|KGN57486.1| (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-17
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

Query: 40 AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT 96
          A+NETRN+I SGGSGRQTVRVKA QNAQS NGGPDLEDSETKPLYSLFPLR Q RT
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRRT 63

The following BLAST results are available for this feature:
BLAST of Cla013109 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202353|gb|KGN57486.1|9.3e-1787.50hypothetical protein Csa_3G198500 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013109Cla013109.1mRNA