Csa3G198500 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G198500
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13630219 .. 13630470 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

mRNA sequence

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Coding sequence (CDS)

ATGGGATTTTATAGATGGAGAAGAGCCCGAAATGAGACACGCAATGTGATTAGGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCGAACAACAAACAACCATCATCGCCAAATTCCTTACTCCTTTCTTCCAACCAAAACTCCATTAA

Protein sequence

MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKFLTPFFQPKLH*
Homology
[Close]
BLAST of Csa3G198500 vs. TrEMBL
Match: A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

[Close]
BLAST of Csa3G198500 vs. NCBI nr
Match: gi|700202353|gb|KGN57486.1| (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60
          MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ
Sbjct: 1  MGFYRWRRARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQ 60

Query: 61 RRTEQQTTIIAKFLTPFFQPKLH 84
          RRTEQQTTIIAKFLTPFFQPKLH
Sbjct: 61 RRTEQQTTIIAKFLTPFFQPKLH 83

The following BLAST results are available for this feature:
BLAST of Csa3G198500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBT3_CUCSA4.7e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1[more]
BLAST of Csa3G198500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202353|gb|KGN57486.1|6.7e-40100.00hypothetical protein Csa_3G198500 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU092546cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G198500.1Csa3G198500.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU092546CU092546transcribed_cluster