Cla97C05G092780 (gene) Watermelon (97103) v2

Overview
NameCla97C05G092780
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 10891433 .. 10891933 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

mRNA sequence

ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

Coding sequence (CDS)

ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGGAGATGGAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCACCACCATTCACCATCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAACCACCATCCACCCACACCAGGTACCTCTTTCCAATAGGTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTCTTCTCTATTACCTTCTTCTGTTTCTGCTAG

Protein sequence

MWGSKQCRSCYNGMGVRPKKRKVGPRKKEVENGVKYGDGAQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRTNNNNDDNHHHHHHHHSPSPFLPKTPLTNISTSYKIHKPPSTHTRYLFPIGFFFSFFFFFFLFFSITFFCFC
Homology
[Close]
BLAST of Cla97C05G092780 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 40 AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGR 95
          A+NETRN+I SGGSGRQTVRVKA QNAQS NGGPDLEDSETKPLYSLFPLR Q R
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRR 62

[Close]
BLAST of Cla97C05G092780 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 49 MSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLR 91
          M GGSGRQTVRVKAG+NA + NGGPDLEDSETKPLYSLF LR
Sbjct: 29 MCGGSGRQTVRVKAGRNAAACNGGPDLEDSETKPLYSLFALR 70

[Close]
BLAST of Cla97C05G092780 vs. TrEMBL
Match: tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 40 AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGR 95
          A+NETRN+I SGGSGRQTVRVKA QNAQS NGGPDLEDSETKPLYSLFPLR Q R
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQS-NGGPDLEDSETKPLYSLFPLRTQRR 62

The following BLAST results are available for this feature:
BLAST of Cla97C05G092780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57486.13.4e-1587.27hypothetical protein Csa_3G198500 [Cucumis sativus][more]
XP_022149327.11.6e-0985.71homeobox protein HAT3.1 isoform X2 [Momordica charantia][more]
BLAST of Cla97C05G092780 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBT3|A0A0A0LBT3_CUCSA2.2e-1587.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1[more]
BLAST of Cla97C05G092780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G092780 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G092780.1Cla97C05G092780.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..117

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G092780Cla013109Watermelon (97103) v1wmwmbB206
Cla97C05G092780Csa3G198500Cucumber (Chinese Long) v2cuwmbB215
Cla97C05G092780MELO3C019556Melon (DHL92) v3.5.1mewmbB434
Cla97C05G092780CSPI03G18020Wild cucumber (PI 183967)cpiwmbB221
Cla97C05G092780Lsi05G002490Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G092780CsGy3G017960Cucumber (Gy14) v2cgybwmbB206
Cla97C05G092780CsaV3_3G018090Cucumber (Chinese Long) v3cucwmbB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G092780Watermelon (97103) v2wmbwmbB021
Cla97C05G092780Watermelon (97103) v2wmbwmbB101
Cla97C05G092780Silver-seed gourdcarwmbB0304
Cla97C05G092780Silver-seed gourdcarwmbB0396
Cla97C05G092780Cucumber (Gy14) v1cgywmbB148
Cla97C05G092780Cucumber (Gy14) v1cgywmbB396
Cla97C05G092780Cucurbita maxima (Rimu)cmawmbB347
Cla97C05G092780Cucurbita maxima (Rimu)cmawmbB763
Cla97C05G092780Cucurbita moschata (Rifu)cmowmbB332
Cla97C05G092780Cucurbita moschata (Rifu)cmowmbB735
Cla97C05G092780Wild cucumber (PI 183967)cpiwmbB567
Cla97C05G092780Cucumber (Chinese Long) v3cucwmbB562
Cla97C05G092780Cucumber (Chinese Long) v2cuwmbB541
Cla97C05G092780Melon (DHL92) v3.6.1medwmbB178
Cla97C05G092780Melon (DHL92) v3.6.1medwmbB424
Cla97C05G092780Melon (DHL92) v3.6.1medwmbB543
Cla97C05G092780Melon (DHL92) v3.5.1mewmbB192
Cla97C05G092780Melon (DHL92) v3.5.1mewmbB549
Cla97C05G092780Watermelon (Charleston Gray)wcgwmbB159
Cla97C05G092780Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G092780Watermelon (97103) v1wmwmbB343
Cla97C05G092780Wax gourdwgowmbB179
Cla97C05G092780Wax gourdwgowmbB258