MELO3C019556 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019556
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA polymerase epsilon catalytic subunit A
Locationchr6 : 11972549 .. 11973087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGGCCTATGGCCCATACAAAGAGAGGATGGAAGGTAGAAAATGGGCTTTTATAGATGTAGAAGGAGCCCAAAATGAGATACGCAATGTGATTAAGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCAAGAACCAAATACAACAACAACAACCACCATCGCCAAATTCCTTACTCCTTTCTTCCAAAAGAAAAAACTCCTTTAACAAACATCTCCATCTCCTACAAGATCCAAAAACGGACAATACTATGTTCTTCTTCTGTACCAGGTACCTCTTTTTCCAATAGGTTTTTATCTTTTATTTTCTATTACGTTTTTTTTCCCTTCTAGATTCTCTTTGTTTCTTGTCAATTCACATGGAAATGGAAATGGAGTTTCCGAAGCTAATGCATTGCCGTGTTCTTCTCTCTTCAAATGCTTTTCTCCTTAA

mRNA sequence

ATGGAGTGGGCCTATGGCCCATACAAAGAGAGGATGGAAGGTAGAAAATGGGCTTTTATAGATGTAGAAGGAGCCCAAAATGAGATACGCAATGTGATTAAGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCAAGAACCAAATACAACAACAACAACCACCATCGCCAAATTCCTTACTCCTTTCTTCCAAAAGAAAAAACTCCTTTAACAAACATCTCCATCTCCTACAAGATCCAAAAACGGACAATACTATGTTCTTCTTCTGTACCAGATTCTCTTTGTTTCTTGTCAATTCACATGGAAATGGAAATGGAGTTTCCGAAGCTAATGCATTGCCGTGTTCTTCTCTCTTCAAATGCTTTTCTCCTTAA

Coding sequence (CDS)

ATGGAGTGGGCCTATGGCCCATACAAAGAGAGGATGGAAGGTAGAAAATGGGCTTTTATAGATGTAGAAGGAGCCCAAAATGAGATACGCAATGTGATTAAGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTAGCCAAAATGCACAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAACACAAAGAAGAACCAAGAACCAAATACAACAACAACAACCACCATCGCCAAATTCCTTACTCCTTTCTTCCAAAAGAAAAAACTCCTTTAACAAACATCTCCATCTCCTACAAGATCCAAAAACGGACAATACTATGTTCTTCTTCTGTACCAGATTCTCTTTGTTTCTTGTCAATTCACATGGAAATGGAAATGGAGTTTCCGAAGCTAATGCATTGCCGTGTTCTTCTCTCTTCAAATGCTTTTCTCCTTAA

Protein sequence

MEWAYGPYKERMEGRKWAFIDVEGAQNEIRNVIKSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTKNQIQQQQPPSPNSLLLSSKRKNSFNKHLHLLQDPKTDNTMFFFCTRFSLFLVNSHGNGNGVSEANALPCSSLFKCFSP*
Homology
[Close]
BLAST of MELO3C019556 vs. TrEMBL
Match: A0A0A0LBT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-21
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 25 AQNEIRNVIKSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTKNQ 83
          A+NE RNVI+SGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRT+ Q
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQ 66

[Close]
BLAST of MELO3C019556 vs. NCBI nr
Match: gi|700202353|gb|KGN57486.1| (hypothetical protein Csa_3G198500 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 25 AQNEIRNVIKSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTKNQ 83
          A+NE RNVI+SGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRT+ Q
Sbjct: 9  ARNETRNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQ 66

The following BLAST results are available for this feature:
BLAST of MELO3C019556 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBT3_CUCSA5.4e-2191.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198500 PE=4 SV=1[more]
BLAST of MELO3C019556 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202353|gb|KGN57486.1|7.7e-2191.38hypothetical protein Csa_3G198500 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019556T1MELO3C019556T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019556Csa3G198500Cucumber (Chinese Long) v2cumeB166
MELO3C019556Cla013109Watermelon (97103) v1mewmB461
MELO3C019556Cla97C05G092780Watermelon (97103) v2mewmbB434
MELO3C019556CSPI03G18020Wild cucumber (PI 183967)cpimeB241
MELO3C019556Lsi05G002490Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C019556CsGy3G017960Cucumber (Gy14) v2cgybmeB210
MELO3C019556CsaV3_3G018090Cucumber (Chinese Long) v3cucmeB247
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019556Cucumber (Chinese Long) v2cumeB511
MELO3C019556Watermelon (Charleston Gray)mewcgB427
MELO3C019556Wax gourdmewgoB530
MELO3C019556Melon (DHL92) v3.5.1memeB090
MELO3C019556Cucumber (Gy14) v1cgymeB144