CsGy2G002670 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G002670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like
Location	Chr2 : 1767537 .. 1768106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

mRNA sequence

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Protein sequence

MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTTHDHHQDSTT

Homology

[Close]

BLAST of CsGy2G002670 vs. NCBI nr
Match: XP_011648733.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_2G009550 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 190
           GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 189

[Close]

BLAST of CsGy2G002670 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 190
           GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 189

[Close]

BLAST of CsGy2G002670 vs. NCBI nr
Match: EOY10918.1 (Uncharacterized protein TCM_026191 isoform 1 [Theobroma cacao])

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

[Close]

BLAST of CsGy2G002670 vs. NCBI nr
Match: EOY10919.1 (Uncharacterized protein TCM_026191 isoform 2 [Theobroma cacao])

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

[Close]

BLAST of CsGy2G002670 vs. NCBI nr
Match: EOY10920.1 (Uncharacterized protein TCM_026191 isoform 3 [Theobroma cacao])

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

[Close]

BLAST of CsGy2G002670 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 234.2 bits (596), Expect = 6.7e-62
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLP
Sbjct: 25  RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKAR
Sbjct: 85  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query: 159 GVSYEK 165
           GVSYEK
Sbjct: 145 GVSYEK 150

[Close]

BLAST of CsGy2G002670 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-61
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLP
Sbjct: 33  RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+R
Sbjct: 93  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query: 159 GVSYEKKRKRPKQK 173
           GVSYEKKRKR   K
Sbjct: 153 GVSYEKKRKRVNNK 166

[Close]

BLAST of CsGy2G002670 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG P
Sbjct: 48  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPA     LRQAWGSLDALIGRLRAA+EENGG  E NPFGARAVRLYLREVRD QAKAR
Sbjct: 108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query: 159 GVSYE 164
           G+SYE
Sbjct: 168 GISYE 172

[Close]

BLAST of CsGy2G002670 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+FG  
Sbjct: 31  RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
            PP+     L+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QAKAR
Sbjct: 91  QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query: 159 GVSYE-KKRKRP 170
           G+ YE KKRKRP
Sbjct: 151 GIPYEKKKRKRP 162

[Close]

BLAST of CsGy2G002670 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-54
Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+G P
Sbjct: 54  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
               XXXXXLRQAWGSLDALIGRLRAA+EENGG+ E NPFGARAVRLYLREVRD Q+KAR
Sbjct: 114 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query: 159 GVSYE 164
           GVSYE
Sbjct: 174 GVSYE 178

[Close]

BLAST of CsGy2G002670 vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLP
Sbjct: 25  RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKAR
Sbjct: 85  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query: 159 GVSYEK 165
           GVSYEK
Sbjct: 145 GVSYEK 150

[Close]

BLAST of CsGy2G002670 vs. Swiss-Prot
Match: sp|Q9M836|LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.5e-60
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLP
Sbjct: 33  RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+R
Sbjct: 93  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query: 159 GVSYEKKRKRPKQK 173
           GVSYEKKRKR   K
Sbjct: 153 GVSYEKKRKRVNNK 166

[Close]

BLAST of CsGy2G002670 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 106/125 (84.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG P
Sbjct: 48  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPA     LRQAWGSLDALIGRLRAA+EENGG  E NPFGARAVRLYLREVRD QAKAR
Sbjct: 108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query: 159 GVSYE 164
           G+SYE
Sbjct: 168 GISYE 172

[Close]

BLAST of CsGy2G002670 vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.9e-55
Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG P
Sbjct: 40  RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHP 99

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
            P  XXXXXLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVRLYLREVR+ QA+AR
Sbjct: 100 APXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159

Query: 159 GVSYE 164
           GVSYE
Sbjct: 160 GVSYE 164

[Close]

BLAST of CsGy2G002670 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.8e-54
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+FG  
Sbjct: 31  RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
            PP+     L+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QAKAR
Sbjct: 91  QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query: 159 GVSYE-KKRKRP 170
           G+ YE KKRKRP
Sbjct: 151 GIPYEKKKRKRP 162

[Close]

BLAST of CsGy2G002670 vs. TrEMBL
Match: tr|A0A1S3C396|A0A1S3C396_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 190
           GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 189

[Close]

BLAST of CsGy2G002670 vs. TrEMBL
Match: tr|A0A0A0LG60|A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 190
           GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDSTT 189

[Close]

BLAST of CsGy2G002670 vs. TrEMBL
Match: tr|A0A061F0P9|A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

[Close]

BLAST of CsGy2G002670 vs. TrEMBL
Match: tr|A0A061F1I7|A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

[Close]

BLAST of CsGy2G002670 vs. TrEMBL
Match: tr|A0A061F8S7|A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 159 GVSYEKKRKRPKQKINTS 177
           GVSYEKKRKRPKQK+ +S
Sbjct: 179 GVSYEKKRKRPKQKVASS 196

The following BLAST results are available for this feature:

BLAST of CsGy2G002670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648733.1	2.1e-77	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus] >KG...	[more]
XP_008456451.1	2.1e-77	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
EOY10918.1	1.5e-67	94.20	Uncharacterized protein TCM_026191 isoform 1 [Theobroma cacao]	[more]
EOY10919.1	1.5e-67	94.20	Uncharacterized protein TCM_026191 isoform 2 [Theobroma cacao]	[more]
EOY10920.1	1.5e-67	94.20	Uncharacterized protein TCM_026191 isoform 3 [Theobroma cacao]	[more]

BLAST of CsGy2G002670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	6.7e-62	91.27	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.9e-61	85.07	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.2e-58	84.80	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.1e-55	75.76	Protein of unknown function (DUF640)	[more]
AT2G31160.1	2.3e-54	84.00	Protein of unknown function (DUF640)	[more]

BLAST of CsGy2G002670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NNI3\|LSH1_ARATH	1.2e-60	91.27	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9M836\|LSH2_ARATH	3.5e-60	85.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LW68\|LSH4_ARATH	2.1e-57	84.80	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q7XDD0\|G1L5_ORYSJ	9.9e-55	85.60	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
sp\|Q9LMK2\|LSH6_ARATH	3.8e-54	75.76	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CsGy2G002670 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C396\|A0A1S3C396_CUCME	1.4e-77	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LG60\|A0A0A0LG60_CUCSA	1.4e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=4 SV=1	[more]
tr\|A0A061F0P9\|A0A061F0P9_THECC	9.9e-68	94.20	Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F1I7\|A0A061F1I7_THECC	9.9e-68	94.20	Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F8S7\|A0A061F8S7_THECC	9.9e-68	94.20	Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002670.1	CsGy2G002670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..152 e-value: 2.1E-65 score: 218.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 39..166 score: 83.005
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..189
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 7..186
None	No IPR available	PANTHER	PTHR31165:SF16	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 7..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G002670	Cla013619	Watermelon (97103) v1	cgybwmB140
CsGy2G002670	Csa2G009550	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G002670	MELO3C004422	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G002670	ClCG02G017040	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G002670	CSPI02G02570	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G002670	CmaCh05G012310	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G002670	CmaCh12G011490	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G002670	CmaCh02G017430	Cucurbita maxima (Rimu)	cgybcmaB228
CsGy2G002670	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G002670	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G002670	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cgybcpeB262
CsGy2G002670	MELO3C004422.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G002670	CsaV3_2G003730	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G002670	Cla97C02G042750	Watermelon (97103) v2	cgybwmbB114
CsGy2G002670	Bhi06G001547	Wax gourd	cgybwgoB130
CsGy2G002670	Carg17440	Silver-seed gourd	carcgybB0269
CsGy2G002670	Carg23007	Silver-seed gourd	carcgybB1053

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G002670	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G002670	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G002670	Cucurbita pepo (Zucchini)	cgybcpeB271
CsGy2G002670	Wax gourd	cgybwgoB133