CmaCh12G011490 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G011490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Light-dependent short hypocotyls 1
Location	Cma_Chr12 : 9054579 .. 9056410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGTAATTAGAGATTAAATAGCATTCTTATGCAACATCAAACGCAGTTATCTCTGATTCACTAAAATCTTATCTTTTGCTCAAACATCTTATATTTTCTAACATCTTATTCTCAAACATCGTAAACAAAATCGGGAACGGTTGAAGACCCTAAGAACGAAAAAAGAAGTGGAGCGTGTAAAGCACGCGCCAGAGAGTGAATGGGTGACAGCACAAATGTCCTTTTACCAATGGTCACCATCAACTCTTTTTCTCTGCTAAAAACTTGTCATGTTATGTTGTATGGCTCTTACTGTTCATATTCTCTCTCCTCTTCTCTCTCTTAATCTAACACTGAACAAACCCACTTCCCCCCACTGAACCACCACTGATCATTACTCATTTCTCCCTTCTTTCTCCACTGTTCATCTCTCACTCCTCTTTCCCCCCTCTCGTCTTCTTCTTCTTCCTCTTCTAAACCCAACAAAAACTCACCTCATTCCCTCTTTATCATTGCATTCCTCATCATTTCATGCAATTCCAACTTCTTGGGTTCACTTTTTTTTCCATTTTTCTCAACTGGGTTTCTGTTCTTTTGCCTTAAATCCTTCAAAAACCTAATCTTTGAGCTTGTTTCTCTCTCTAAAACCCTAAAAATCCAATCTTTTTTTGCTCATTTCCCTAAATATCTCTTGTTTTTTCTTCAATCTTCTTGTCTTTCATTTGGGTTTTCGTCTTTAATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCGCCGCCACACCTAGCCGCTACGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCTATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTCGGGAAGACCAAAGTACATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGAGAACGAGAACGAGATCAAGACGAACACACAATCAAGAACATTGATATATTTTTCTATATGAATTATGTGCTAAGAGAATTTGTAACCTATCGCTTATTTTTATGTCCAATTCGTAATTGCGTTGAAGTGTAGATTTGAACCTTCGACCTGTATGAGCTACGCATGGCTCGTGTTAGCTTTCTATAAGGATGATCATGTTTTTTGTTTTAATCTTCAAGATCACTTTGAATTGATACTAAATTGATGGGTTTGGTGGATTTTTGAGGGAAAAAATAGTGTTTGTGACATAAATTAGTGGGAAATTATGGCTAAACTTTGGTGGGTTTTGTCCATTTAGTGATTTGGTTATCAAAGATTTGATCTTTATAAGCATATATATGTATAATTGGAAGTAAATTTGAGTATTTTAATGATGACCCAAATGAAGAACATGAACATGTTCAAAGCTAGGGCTTTTCAGGTTGTTTTTTTTCATGTCATCAGGTAAAGAAACAGAAGATTGGGTTTTTGTGGTGGGAAATTCAACAGTTATTTGA

mRNA sequence

ATGTATGAATCATCCTCAAATCCCACTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCGCCGCCACACCTAGCCGCTACGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCTATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTCGGGAAGACCAAAGTACATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTAAAGAAACAGAAGATTGGGTTTTTGTGGTGGGAAATTCAACAGTTATTTGA

Coding sequence (CDS)

ATGTATGAATCATCCTCAAATCCCACTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCGCCGCCACACCTAGCCGCTACGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCTATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTCGGGAAGACCAAAGTACATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTAAAGAAACAGAAGATTGGGTTTTTGTGGTGGGAAATTCAACAGTTATTTGA

Protein sequence

MYESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQDGKETEDWVFVVGNSTVI

Homology

[Close]

BLAST of CmaCh12G011490 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 127/145 (87.59%), Postives = 136/145 (93.79%), Query Frame = 1


Query: 29  SPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 88
           +P+SS+  T  ++ SRYENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFG
Sbjct: 11  NPNSSTQLTPPSS-SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFG 70

Query: 89  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 148
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAV
Sbjct: 71  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 130

Query: 149 RLYLREVRDFQAKARGVSYEKKRKR 174
           RL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 131 RLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CmaCh12G011490 vs. Swiss-Prot
Match: LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.8e-67
Identity = 121/155 (78.06%), Postives = 135/155 (87.10%), Query Frame = 1


Query: 29  SPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 88
           S  + SS ++  + SRYENQKRRDWNTFCQYLRNH PPLSL  CSGAHVL+FLRYLDQFG
Sbjct: 18  STQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFG 77

Query: 89  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 148
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE++PFG+R+V
Sbjct: 78  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSV 137

Query: 149 RLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQ 184
           R++LREVRDFQAK+RGVSYEKKRKR   K    +Q
Sbjct: 138 RIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of CmaCh12G011490 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.3e-67
Identity = 132/163 (80.98%), Postives = 136/163 (83.44%), Query Frame = 1


Query: 14  TNTAAAAAAVVTACPSPSSSSSATAAATP-SRYENQKRRDWNTFCQYLRNHRPPLSLPMC 73
           TN   AAAA  T   S SSSSS  +     SRYENQKRRDWNTF QYLRNHRPPLSL  C
Sbjct: 17  TNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRC 76

Query: 74  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 133
           SGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA+E
Sbjct: 77  SGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFE 136

Query: 134 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 175
           ENGG PE+NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 137 ENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmaCh12G011490 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-66
Identity = 121/144 (84.03%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 32  SSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK 91
           ++S++ A A+PSRYE+QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTK
Sbjct: 28  ATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTK 87

Query: 92  VHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLY 151
           VH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGRPE+NPFGARAVRLY
Sbjct: 88  VHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLY 147

Query: 152 LREVRDFQAKARGVSYE-KKRKRP 175
           LREVR+ QA+ARGVSYE KKRK+P
Sbjct: 148 LREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of CmaCh12G011490 vs. Swiss-Prot
Match: G1L3_ORYSJ (Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-65
Identity = 121/161 (75.16%), Postives = 130/161 (80.75%), Query Frame = 1


Query: 25  TACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYL 84
           +A  S S+   A    TPSRYE QKRRDWNTF QYLRNHRPPL L  CSGAHVLEFLRYL
Sbjct: 54  SAGASSSAGGGAATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYL 113

Query: 85  DQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFG 144
           DQFGKTKVH   CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGRPESNPF 
Sbjct: 114 DQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFA 173

Query: 145 ARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQDG 186
            RAVRLYLREVR+ QA+ARGVSYEKK+++  Q    S   G
Sbjct: 174 VRAVRLYLREVREHQARARGVSYEKKKRKKPQPADTSGGGG 214

[Close]

BLAST of CmaCh12G011490 vs. TrEMBL
Match: A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.9e-77
Identity = 146/179 (81.56%), Postives = 155/179 (86.59%), Query Frame = 1


Query: 4   SSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNH 63
           SS+N TP  TT T           P  +++++A +A TPSRYENQKRRDWNTFCQYLRNH
Sbjct: 8   SSNNSTPTTTTTTTT---------PPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNH 67

Query: 64  RPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 123
           RPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 68  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 127

Query: 124 IGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSN 183
           IGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI  S+
Sbjct: 128 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 177

[Close]

BLAST of CmaCh12G011490 vs. TrEMBL
Match: A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 145/185 (78.38%), Postives = 158/185 (85.41%), Query Frame = 1


Query: 8   PTPYDTTNTAAAAAA------VVTACPSPSSSSSAT---AAATPSRYENQKRRDWNTFCQ 67
           P P   +NT A          + ++  +P+S ++ T   A+ TPSRYENQKRRDWNTFCQ
Sbjct: 14  PCPIVGSNTIATLVTNNNNNIISSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQ 73

Query: 68  YLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 127
           YLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG
Sbjct: 74  YLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 133

Query: 128 SLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI 184
           SLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+
Sbjct: 134 SLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKV 193

[Close]

BLAST of CmaCh12G011490 vs. TrEMBL
Match: A0A067JIP2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23545 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 140/165 (84.85%), Postives = 146/165 (88.48%), Query Frame = 1


Query: 13  TTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMC 72
           TTN+  +A A  T  PS          +TPSRYENQKRRDWNTFCQYLRNHRPPLSLP+C
Sbjct: 27  TTNSTGSATATTTTSPS----------STPSRYENQKRRDWNTFCQYLRNHRPPLSLPVC 86

Query: 73  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 132
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 87  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 146

Query: 133 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 178
           E+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPK K
Sbjct: 147 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKPK 181

[Close]

BLAST of CmaCh12G011490 vs. TrEMBL
Match: B9S7K6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609070 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 147/186 (79.03%), Postives = 154/186 (82.80%), Query Frame = 1


Query: 4   SSSNPTPYD--------TTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNT 63
           SS+NPT           TTNTA  A    T   SP+S        TPSRYENQKRRDWNT
Sbjct: 6   SSANPTFSSPIMGGGTITTNTATNAITSPTTTTSPAS--------TPSRYENQKRRDWNT 65

Query: 64  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 123
           FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFG+PNPPAPCPCPLRQ
Sbjct: 66  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGIPNPPAPCPCPLRQ 125

Query: 124 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 182
           AWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 126 AWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPK 183

[Close]

BLAST of CmaCh12G011490 vs. TrEMBL
Match: A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.8e-75
Identity = 145/185 (78.38%), Postives = 158/185 (85.41%), Query Frame = 1


Query: 8   PTPYDTTNTAAAAAA------VVTACPSPSSSSSAT---AAATPSRYENQKRRDWNTFCQ 67
           P P   +NT A          + ++  +P+S ++ T   A+ TPSRYENQKRRDWNTFCQ
Sbjct: 14  PCPIVGSNTIATLVTNNNNNIISSSTVTPTSGTTTTTPPASTTPSRYENQKRRDWNTFCQ 73

Query: 68  YLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 127
           YLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG
Sbjct: 74  YLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWG 133

Query: 128 SLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI 184
           SLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPKQK+
Sbjct: 134 SLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKQKV 193

[Close]

BLAST of CmaCh12G011490 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 267.3 bits (682), Expect = 7.6e-72
Identity = 127/145 (87.59%), Postives = 136/145 (93.79%), Query Frame = 1


Query: 29  SPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 88
           +P+SS+  T  ++ SRYENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFG
Sbjct: 11  NPNSSTQLTPPSS-SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFG 70

Query: 89  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 148
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAV
Sbjct: 71  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 130

Query: 149 RLYLREVRDFQAKARGVSYEKKRKR 174
           RL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 131 RLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CmaCh12G011490 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-68
Identity = 121/155 (78.06%), Postives = 135/155 (87.10%), Query Frame = 1


Query: 29  SPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 88
           S  + SS ++  + SRYENQKRRDWNTFCQYLRNH PPLSL  CSGAHVL+FLRYLDQFG
Sbjct: 18  STQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFG 77

Query: 89  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 148
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE++PFG+R+V
Sbjct: 78  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSV 137

Query: 149 RLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQ 184
           R++LREVRDFQAK+RGVSYEKKRKR   K    +Q
Sbjct: 138 RIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of CmaCh12G011490 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-68
Identity = 132/163 (80.98%), Postives = 136/163 (83.44%), Query Frame = 1


Query: 14  TNTAAAAAAVVTACPSPSSSSSATAAATP-SRYENQKRRDWNTFCQYLRNHRPPLSLPMC 73
           TN   AAAA  T   S SSSSS  +     SRYENQKRRDWNTF QYLRNHRPPLSL  C
Sbjct: 17  TNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRC 76

Query: 74  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 133
           SGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA+E
Sbjct: 77  SGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFE 136

Query: 134 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 175
           ENGG PE+NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 137 ENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmaCh12G011490 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 248.1 bits (632), Expect = 4.8e-66
Identity = 127/171 (74.27%), Postives = 141/171 (82.46%), Query Frame = 1


Query: 13  TTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMC 72
           + N+++   A       P SSSS+ +A + SRYENQKRRDWNTF QYLRNHRPPLSL  C
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANS-SRYENQKRRDWNTFGQYLRNHRPPLSLSRC 83

Query: 73  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 132
           SGAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+E
Sbjct: 84  SGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFE 143

Query: 133 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKIANSN 183
           ENGG+PE+NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + S+
Sbjct: 144 ENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of CmaCh12G011490 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-62
Identity = 114/148 (77.03%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 28  PSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQF 87
           P PS  SS  A  TPSRYE+QKRRDWNTF QYL+NH+PPL+L  CSGAHV+EFL+YLDQF
Sbjct: 17  PGPSFVSSPPA--TPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 76

Query: 88  GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARA 147
           GKTKVH   CP+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGRP+SNPF ARA
Sbjct: 77  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 136

Query: 148 VRLYLREVRDFQAKARGVSYE-KKRKRP 175
           VR+YLREVR+ QAKARG+ YE KKRKRP
Sbjct: 137 VRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of CmaCh12G011490 vs. NCBI nr
Match: gi|778666389|ref|XP_011648733.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 5.6e-77
Identity = 146/179 (81.56%), Postives = 155/179 (86.59%), Query Frame = 1


Query: 4   SSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNH 63
           SS+N TP  TT T           P  +++++A +A TPSRYENQKRRDWNTFCQYLRNH
Sbjct: 8   SSNNSTPTTTTTTTT---------PPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNH 67

Query: 64  RPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 123
           RPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 68  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 127

Query: 124 IGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSN 183
           IGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI  S+
Sbjct: 128 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 177

[Close]

BLAST of CmaCh12G011490 vs. NCBI nr
Match: gi|659070745|ref|XP_008456451.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 9.6e-77
Identity = 148/180 (82.22%), Postives = 155/180 (86.11%), Query Frame = 1


Query: 3   ESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRN 62
           ESSSN     TT T        T  P  +++S+A +A TPSRYENQKRRDWNTFCQYLRN
Sbjct: 6   ESSSNNDNPTTTTT--------TTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRN 65

Query: 63  HRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 122
           HRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA
Sbjct: 66  HRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDA 125

Query: 123 LIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSN 182
           LIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI  S+
Sbjct: 126 LIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 177

[Close]

BLAST of CmaCh12G011490 vs. NCBI nr
Match: gi|1009117864|ref|XP_015875547.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba])

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-75
Identity = 144/183 (78.69%), Postives = 158/183 (86.34%), Query Frame = 1


Query: 1   MYESSSNPTPYDTTNTAAAAAAVVTACPSPSSS-----SSATAAATPSRYENQKRRDWNT 60
           +Y+ S+     ++++    A++  T   SP SS     SS++   TPSRYENQKRRDWNT
Sbjct: 12  IYDPSTITNNSNSSSPNITASSTSTTISSPPSSTTTTTSSSSTPTTPSRYENQKRRDWNT 71

Query: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 72  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 131

Query: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 179
           AWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 132 AWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 191

[Close]

BLAST of CmaCh12G011490 vs. NCBI nr
Match: gi|802759042|ref|XP_012089329.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Jatropha curcas])

HSP 1 Score: 289.7 bits (740), Expect = 4.0e-75
Identity = 140/165 (84.85%), Postives = 146/165 (88.48%), Query Frame = 1


Query: 13  TTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMC 72
           TTN+  +A A  T  PS          +TPSRYENQKRRDWNTFCQYLRNHRPPLSLP+C
Sbjct: 27  TTNSTGSATATTTTSPS----------STPSRYENQKRRDWNTFCQYLRNHRPPLSLPVC 86

Query: 73  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 132
           SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE
Sbjct: 87  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 146

Query: 133 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 178
           E+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPK K
Sbjct: 147 EHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPKPK 181

[Close]

BLAST of CmaCh12G011490 vs. NCBI nr
Match: gi|255561933|ref|XP_002521975.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ricinus communis])

HSP 1 Score: 289.7 bits (740), Expect = 4.0e-75
Identity = 147/186 (79.03%), Postives = 154/186 (82.80%), Query Frame = 1


Query: 4   SSSNPTPYD--------TTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNT 63
           SS+NPT           TTNTA  A    T   SP+S        TPSRYENQKRRDWNT
Sbjct: 6   SSANPTFSSPIMGGGTITTNTATNAITSPTTTTSPAS--------TPSRYENQKRRDWNT 65

Query: 64  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 123
           FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFG+PNPPAPCPCPLRQ
Sbjct: 66  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGIPNPPAPCPCPLRQ 125

Query: 124 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 182
           AWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 126 AWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGVSYEKKRKRPK 183

The following BLAST results are available for this feature:

BLAST of CmaCh12G011490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH1_ARATH	1.3e-70	87.59	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
LSH2_ARATH	1.8e-67	78.06	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 ...	[more]
LSH4_ARATH	5.3e-67	80.98	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L5_ORYSJ	1.2e-66	84.03	Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1	[more]
G1L3_ORYSJ	2.2e-65	75.16	Protein G1-like3 OS=Oryza sativa subsp. japonica GN=G1L3 PE=1 SV=1	[more]

BLAST of CmaCh12G011490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60_CUCSA	3.9e-77	81.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1	[more]
A0A061F1I7_THECC	2.8e-75	78.38	Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A067JIP2_JATCU	2.8e-75	84.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23545 PE=4 SV=1	[more]
B9S7K6_RICCO	2.8e-75	79.03	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609070 PE=4 SV=1	[more]
A0A061F1X4_THECC	2.8e-75	78.38	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]

BLAST of CmaCh12G011490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	7.6e-72	87.59	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.0e-68	78.06	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.0e-68	80.98	Protein of unknown function (DUF640)	[more]
AT2G31160.1	4.8e-66	74.27	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.9e-62	77.03	Protein of unknown function (DUF640)	[more]

BLAST of CmaCh12G011490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666389\|ref\|XP_011648733.1\|	5.6e-77	81.56	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus]	[more]
gi\|659070745\|ref\|XP_008456451.1\|	9.6e-77	82.22	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
gi\|1009117864\|ref\|XP_015875547.1\|	2.4e-75	78.69	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba]	[more]
gi\|802759042\|ref\|XP_012089329.1\|	4.0e-75	84.85	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Jatropha curcas]	[more]
gi\|255561933\|ref\|XP_002521975.1\|	4.0e-75	79.03	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011490.1	CmaCh12G011490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 38..157 score: 1.2
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 44..171 score: 85
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 18..183 score: 5.6E
None	No IPR available	PANTHER	PTHR31165:SF16	SUBFAMILY NOT NAMED	coord: 18..183 score: 5.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G011490	Cucsa.132890	Cucumber (Gy14) v1	cgycmaB0364
CmaCh12G011490	Cla013619	Watermelon (97103) v1	cmawmB170
CmaCh12G011490	Csa2G009550	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G011490	MELO3C004422	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G011490	ClCG02G017040	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G011490	CSPI02G02570	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G011490	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G011490	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cmacpeB206
CmaCh12G011490	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G011490	MELO3C004422.2	Melon (DHL92) v3.6.1	cmamedB187
CmaCh12G011490	CsaV3_2G003730	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G011490	Cla97C02G042750	Watermelon (97103) v2	cmawmbB175
CmaCh12G011490	Bhi06G001547	Wax gourd	cmawgoB0192
CmaCh12G011490	CsGy2G002670	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G011490	Carg23007	Silver-seed gourd	carcmaB1483
CmaCh12G011490	Carg08962	Silver-seed gourd	carcmaB1074
CmaCh12G011490	Carg17440	Silver-seed gourd	carcmaB0355

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh12G011490	CmaCh05G012310	Cucurbita maxima (Rimu)	cmacmaB190

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G011490	Wax gourd	cmawgoB0177
CmaCh12G011490	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G011490	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G011490	Cucurbita pepo (Zucchini)	cmacpeB203