Cp4.1LG07g10840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g10840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Light-dependent short hypocotyls protein
Location	Cp4.1LG07 : 10146908 .. 10147480 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCATTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGTGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATTGCAAATTCAAATCAAGACGGTGCAACTTGA

mRNA sequence

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCATTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGTGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATTGCAAATTCAAATCAAGACGGTGCAACTTGA

Coding sequence (CDS)

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCATTCCTTACGACACAACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCTTCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGTGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCACCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATTGCAAATTCAAATCAAGACGGTGCAACTTGA

Protein sequence

MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQDGAT

Homology

[Close]

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot
Match: LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 127/145 (87.59%), Postives = 136/145 (93.79%), Query Frame = 1


Query: 32  SPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 91
           +P+SS+  T  ++ SRYENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFG
Sbjct: 11  NPNSSTQLTPPSS-SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFG 70

Query: 92  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 151
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAV
Sbjct: 71  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 130

Query: 152 RLYLREVRDFQAKARGVSYEKKRKR 177
           RL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 131 RLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot
Match: LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.9e-68
Identity = 130/186 (69.89%), Postives = 148/186 (79.57%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60
           MDL S++ +N  P  + +T            +PSS SS  ++   SRYENQKRRDWNTFC
Sbjct: 1   MDLISQNHNNRNPNTSLSTQ-----------TPSSFSSPPSS---SRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENGG PE++PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K
Sbjct: 121 GSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNK 172

Query: 181 IANSNQ 187
               +Q
Sbjct: 181 QITQSQ 172

[Close]

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.0e-67
Identity = 131/165 (79.39%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 14  YDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLP 73
           ++T    AAAA   T   S SSSS  + T   SRYENQKRRDWNTF QYLRNHRPPLSL 
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 74  MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA 133
            CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 134 YEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 178
           +EENGG PE+NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot
Match: G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-66
Identity = 121/144 (84.03%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 35  SSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK 94
           ++S++ A A+PSRYE+QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTK
Sbjct: 28  ATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTK 87

Query: 95  VHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLY 154
           VH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGRPE+NPFGARAVRLY
Sbjct: 88  VHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLY 147

Query: 155 LREVRDFQAKARGVSYE-KKRKRP 178
           LREVR+ QA+ARGVSYE KKRK+P
Sbjct: 148 LREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot
Match: G1L4_ORYSI (Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.5e-66
Identity = 122/148 (82.43%), Postives = 131/148 (88.51%), Query Frame = 1


Query: 34  SSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKT 93
           S S  A A  +PSRYE QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKT
Sbjct: 28  SPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKT 87

Query: 94  KVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRL 153
           KVH   CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGRPESNPF ARAVRL
Sbjct: 88  KVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRL 147

Query: 154 YLREVRDFQAKARGVSYE-KKRKRPKQK 181
           YLREVR+ QA+ARGVSYE KKRK+P+Q+
Sbjct: 148 YLREVREHQARARGVSYEKKKRKKPQQQ 175

[Close]

BLAST of Cp4.1LG07g10840 vs. TrEMBL
Match: A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.0e-79
Identity = 151/185 (81.62%), Postives = 159/185 (85.95%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT T        T  P  +++++A +  TPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNNSTPTTTTT--------TTTPPTATTTTAASATTPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 177

Query: 181 IANSN 186
           I  S+
Sbjct: 181 INTSS 177

[Close]

BLAST of Cp4.1LG07g10840 vs. TrEMBL
Match: M5W052_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011331mg PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.1e-76
Identity = 143/190 (75.26%), Postives = 166/190 (87.37%), Query Frame = 1


Query: 1   MDLFSE--SSSNPIPYDTTNTAAAAAAVVT---ACPSPSSSSSATATATPSRYENQKRRD 60
           MD+ SE  + + PI ++T    ++ ++++T   +  SP++++ + +T TPSRYENQKRRD
Sbjct: 1   MDIVSEPITKNPPITFETPIINSSTSSMITPSSSAISPATTADSISTPTPSRYENQKRRD 60

Query: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCP 120
           WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK+HNQTCPFFGLPNPPAPCPCP
Sbjct: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKIHNQTCPFFGLPNPPAPCPCP 120

Query: 121 LRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180
           LRQAWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRK
Sbjct: 121 LRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180

Query: 181 RPKQKIANSN 186
           RP     ++N
Sbjct: 181 RPNNNNNSNN 190

[Close]

BLAST of Cp4.1LG07g10840 vs. TrEMBL
Match: A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.0e-76
Identity = 150/201 (74.63%), Postives = 165/201 (82.09%), Query Frame = 1


Query: 1   MDLFSESSSN---PIPYDTTNTAAAAAA------VVTACPSPSSSSSAT---ATATPSRY 60
           MDL S  ++    P P   +NT A          + ++  +P+S ++ T   A+ TPSRY
Sbjct: 1   MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTSGTTTTTPPASTTPSRY 60

Query: 61  ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120
           ENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP
Sbjct: 61  ENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120

Query: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGV 180
           PAPCPCPLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGV
Sbjct: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGV 180

Query: 181 SYEKKRKRPKQKIANSNQDGA 190
           SYEKKRKRPKQK+A+S Q  A
Sbjct: 181 SYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Cp4.1LG07g10840 vs. TrEMBL
Match: A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.0e-76
Identity = 150/201 (74.63%), Postives = 165/201 (82.09%), Query Frame = 1


Query: 1   MDLFSESSSN---PIPYDTTNTAAAAAA------VVTACPSPSSSSSAT---ATATPSRY 60
           MDL S  ++    P P   +NT A          + ++  +P+S ++ T   A+ TPSRY
Sbjct: 1   MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTSGTTTTTPPASTTPSRY 60

Query: 61  ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120
           ENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP
Sbjct: 61  ENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120

Query: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGV 180
           PAPCPCPLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGV
Sbjct: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGV 180

Query: 181 SYEKKRKRPKQKIANSNQDGA 190
           SYEKKRKRPKQK+A+S Q  A
Sbjct: 181 SYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Cp4.1LG07g10840 vs. TrEMBL
Match: A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.0e-76
Identity = 150/201 (74.63%), Postives = 165/201 (82.09%), Query Frame = 1


Query: 1   MDLFSESSSN---PIPYDTTNTAAAAAA------VVTACPSPSSSSSAT---ATATPSRY 60
           MDL S  ++    P P   +NT A          + ++  +P+S ++ T   A+ TPSRY
Sbjct: 1   MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTSGTTTTTPPASTTPSRY 60

Query: 61  ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120
           ENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP
Sbjct: 61  ENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 120

Query: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGV 180
           PAPCPCPLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARGV
Sbjct: 121 PAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARGV 180

Query: 181 SYEKKRKRPKQKIANSNQDGA 190
           SYEKKRKRPKQK+A+S Q  A
Sbjct: 181 SYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Cp4.1LG07g10840 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-72
Identity = 127/145 (87.59%), Postives = 136/145 (93.79%), Query Frame = 1


Query: 32  SPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 91
           +P+SS+  T  ++ SRYENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFG
Sbjct: 11  NPNSSTQLTPPSS-SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFG 70

Query: 92  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAV 151
           KTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAV
Sbjct: 71  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAV 130

Query: 152 RLYLREVRDFQAKARGVSYEKKRKR 177
           RL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 131 RLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Cp4.1LG07g10840 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-69
Identity = 130/186 (69.89%), Postives = 148/186 (79.57%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60
           MDL S++ +N  P  + +T            +PSS SS  ++   SRYENQKRRDWNTFC
Sbjct: 1   MDLISQNHNNRNPNTSLSTQ-----------TPSSFSSPPSS---SRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENGG PE++PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K
Sbjct: 121 GSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNK 172

Query: 181 IANSNQ 187
               +Q
Sbjct: 181 QITQSQ 172

[Close]

BLAST of Cp4.1LG07g10840 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 257.7 bits (657), Expect = 5.7e-69
Identity = 131/165 (79.39%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 14  YDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLP 73
           ++T    AAAA   T   S SSSS  + T   SRYENQKRRDWNTF QYLRNHRPPLSL 
Sbjct: 15  HNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLS 74

Query: 74  MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA 133
            CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA
Sbjct: 75  RCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAA 134

Query: 134 YEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 178
           +EENGG PE+NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 135 FEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG07g10840 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-66
Identity = 127/171 (74.27%), Postives = 140/171 (81.87%), Query Frame = 1


Query: 16  TTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMC 75
           + N+++   A       P SSSS+ + A  SRYENQKRRDWNTF QYLRNHRPPLSL  C
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPS-ANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRC 83

Query: 76  SGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYE 135
           SGAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+E
Sbjct: 84  SGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFE 143

Query: 136 ENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKIANSN 186
           ENGG+PE+NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + S+
Sbjct: 144 ENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of Cp4.1LG07g10840 vs. TAIR10
Match: AT1G07090.1 (AT1G07090.1 Protein of unknown function (DUF640))

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-62
Identity = 114/148 (77.03%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 31  PSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQF 90
           P PS  SS  AT  PSRYE+QKRRDWNTF QYL+NH+PPL+L  CSGAHV+EFL+YLDQF
Sbjct: 17  PGPSFVSSPPAT--PSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 76

Query: 91  GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARA 150
           GKTKVH   CP+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGRP+SNPF ARA
Sbjct: 77  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 136

Query: 151 VRLYLREVRDFQAKARGVSYE-KKRKRP 178
           VR+YLREVR+ QAKARG+ YE KKRKRP
Sbjct: 137 VRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Cp4.1LG07g10840 vs. NCBI nr
Match: gi|659070745|ref|XP_008456451.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 3.3e-79
Identity = 152/185 (82.16%), Postives = 159/185 (85.95%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT T        T  P  +++S+A +  TPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNNDNPTTTTT--------TTTPPTATTSAAASATTPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 177

Query: 181 IANSN 186
           I  S+
Sbjct: 181 INTSS 177

[Close]

BLAST of Cp4.1LG07g10840 vs. NCBI nr
Match: gi|778666389|ref|XP_011648733.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 4.4e-79
Identity = 151/185 (81.62%), Postives = 159/185 (85.95%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60
           MDLFSESSSN     TT T        T  P  +++++A +  TPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNNSTPTTTTT--------TTTPPTATTTTAASATTPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 177

Query: 181 IANSN 186
           I  S+
Sbjct: 181 INTSS 177

[Close]

BLAST of Cp4.1LG07g10840 vs. NCBI nr
Match: gi|645222798|ref|XP_008218325.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Prunus mume])

HSP 1 Score: 295.4 bits (755), Expect = 7.0e-77
Identity = 145/192 (75.52%), Postives = 167/192 (86.98%), Query Frame = 1


Query: 1   MDLFSE--SSSNPIPYDTTNTAAAAAAVVT---ACPSPSSSSSATATATPSRYENQKRRD 60
           MD+ SE  + + PI ++T    ++ ++++T   +  SP++++ + +T TPSRYENQKRRD
Sbjct: 1   MDIVSEPITKNPPITFETPIINSSTSSMITPSSSAISPATTADSISTPTPSRYENQKRRD 60

Query: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCP 120
           WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK+HNQTCPFFGLPNPPAPCPCP
Sbjct: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKIHNQTCPFFGLPNPPAPCPCP 120

Query: 121 LRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180
           LRQAWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRK
Sbjct: 121 LRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180

Query: 181 RPKQKIANSNQD 188
           RP     NSN +
Sbjct: 181 RPNNNNNNSNNN 192

[Close]

BLAST of Cp4.1LG07g10840 vs. NCBI nr
Match: gi|1009117864|ref|XP_015875547.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba])

HSP 1 Score: 295.4 bits (755), Expect = 7.0e-77
Identity = 150/195 (76.92%), Postives = 165/195 (84.62%), Query Frame = 1


Query: 1   MDLFSESSSNPIPYDTTN------------TAAAAAAVVTACPSPSSS--SSATATATPS 60
           MDL SE S  PI YD +             TA++ +  +++ PS +++  SS++   TPS
Sbjct: 1   MDLVSEPSK-PIIYDPSTITNNSNSSSPNITASSTSTTISSPPSSTTTTTSSSSTPTTPS 60

Query: 61  RYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 120
           RYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 61  RYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 120

Query: 121 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKAR 180
           NPPAPCPCPLRQAWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKAR
Sbjct: 121 NPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKAR 180

Query: 181 GVSYEKKRKRPKQKI 182
           GVSYEKKRKRPK K+
Sbjct: 181 GVSYEKKRKRPKPKV 194

[Close]

BLAST of Cp4.1LG07g10840 vs. NCBI nr
Match: gi|595829513|ref|XP_007205890.1| (hypothetical protein PRUPE_ppa011331mg [Prunus persica])

HSP 1 Score: 292.4 bits (747), Expect = 5.9e-76
Identity = 143/190 (75.26%), Postives = 166/190 (87.37%), Query Frame = 1


Query: 1   MDLFSE--SSSNPIPYDTTNTAAAAAAVVT---ACPSPSSSSSATATATPSRYENQKRRD 60
           MD+ SE  + + PI ++T    ++ ++++T   +  SP++++ + +T TPSRYENQKRRD
Sbjct: 1   MDIVSEPITKNPPITFETPIINSSTSSMITPSSSAISPATTADSISTPTPSRYENQKRRD 60

Query: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCP 120
           WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK+HNQTCPFFGLPNPPAPCPCP
Sbjct: 61  WNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKIHNQTCPFFGLPNPPAPCPCP 120

Query: 121 LRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180
           LRQAWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRK
Sbjct: 121 LRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRK 180

Query: 181 RPKQKIANSN 186
           RP     ++N
Sbjct: 181 RPNNNNNSNN 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g10840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSH1_ARATH	1.3e-70	87.59	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 ...	[more]
LSH2_ARATH	5.9e-68	69.89	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana GN=LSH2 PE=1 ...	[more]
LSH4_ARATH	1.0e-67	79.39	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ...	[more]
G1L5_ORYSJ	1.9e-66	84.03	Protein G1-like5 OS=Oryza sativa subsp. japonica GN=G1L5 PE=1 SV=1	[more]
G1L4_ORYSI	5.5e-66	82.43	Protein G1-like4 OS=Oryza sativa subsp. indica GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Cp4.1LG07g10840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60_CUCSA	3.0e-79	81.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009550 PE=4 SV=1	[more]
M5W052_PRUPE	4.1e-76	75.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011331mg PE=4 SV=1	[more]
A0A061F0P9_THECC	7.0e-76	74.63	Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F1X4_THECC	7.0e-76	74.63	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]
A0A061F1I7_THECC	7.0e-76	74.63	Uncharacterized protein isoform 4 OS=Theobroma cacao GN=TCM_026191 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g10840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	7.2e-72	87.59	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.3e-69	69.89	Protein of unknown function (DUF640)	[more]
AT3G23290.2	5.7e-69	79.39	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.4e-66	74.27	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.8e-62	77.03	Protein of unknown function (DUF640)	[more]

BLAST of Cp4.1LG07g10840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070745\|ref\|XP_008456451.1\|	3.3e-79	82.16	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
gi\|778666389\|ref\|XP_011648733.1\|	4.4e-79	81.62	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus]	[more]
gi\|645222798\|ref\|XP_008218325.1\|	7.0e-77	75.52	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Prunus mume]	[more]
gi\|1009117864\|ref\|XP_015875547.1\|	7.0e-77	76.92	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Ziziphus jujuba]	[more]
gi\|595829513\|ref\|XP_007205890.1\|	5.9e-76	75.26	hypothetical protein PRUPE_ppa011331mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g10840.1	Cp4.1LG07g10840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 41..160 score: 1.0
IPR006936	ALOG domain	PROFILE	PS51697	ALOG	coord: 47..174 score: 85
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 21..190 score: 6.5E
None	No IPR available	PANTHER	PTHR31165:SF16	SUBFAMILY NOT NAMED	coord: 21..190 score: 6.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g10840	Cucsa.132890	Cucumber (Gy14) v1	cgycpeB0355
Cp4.1LG07g10840	CmaCh12G011490	Cucurbita maxima (Rimu)	cmacpeB206
Cp4.1LG07g10840	CmaCh05G012310	Cucurbita maxima (Rimu)	cmacpeB798
Cp4.1LG07g10840	Cla013619	Watermelon (97103) v1	cpewmB809
Cp4.1LG07g10840	Csa2G009550	Cucumber (Chinese Long) v2	cpecuB812
Cp4.1LG07g10840	MELO3C004422	Melon (DHL92) v3.5.1	cpemeB778
Cp4.1LG07g10840	ClCG02G017040	Watermelon (Charleston Gray)	cpewcgB736
Cp4.1LG07g10840	CSPI02G02570	Wild cucumber (PI 183967)	cpecpiB813
Cp4.1LG07g10840	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	cpelsiB655
Cp4.1LG07g10840	MELO3C004422.2	Melon (DHL92) v3.6.1	cpemedB914
Cp4.1LG07g10840	CsaV3_2G003730	Cucumber (Chinese Long) v3	cpecucB1006
Cp4.1LG07g10840	Bhi06G001547	Wax gourd	cpewgoB1013
Cp4.1LG07g10840	CsGy2G002670	Cucumber (Gy14) v2	cgybcpeB262
Cp4.1LG07g10840	Carg23007	Silver-seed gourd	carcpeB1497
Cp4.1LG07g10840	Carg17440	Silver-seed gourd	carcpeB0362

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g10840	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cpecpeB147

The following block(s) are covering this gene:

None