Carg17440 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17440
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Light-dependent short hypocotyls protein
Location	Cucurbita_argyrosperma_scaffold_084 : 107555 .. 108127 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA

mRNA sequence

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA

Coding sequence (CDS)

ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA

Protein sequence

MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQDGAT

Homology

[Close]

BLAST of Carg17440 vs. NCBI nr
Match: XP_022938293.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata])

HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG
Sbjct: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167

Query: 168 VSYEKKRKRPKQKIANSNQDGAT 191
           VSYEKKRKRPKQKIANSNQDGAT
Sbjct: 168 VSYEKKRKRPKQKIANSNQDGAT 190

[Close]

BLAST of Carg17440 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG
Sbjct: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167

Query: 168 VSYEKKRKRPKQKIANSNQDGAT 191
           VSYEKKRKRPKQKIANSNQDGAT
Sbjct: 168 VSYEKKRKRPKQKIANSNQDGAT 190

[Close]

BLAST of Carg17440 vs. NCBI nr
Match: XP_023538298.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG
Sbjct: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167

Query: 168 VSYEKKRKRPKQKIANSNQDGAT 191
           VSYEKKRKRPKQKIANSNQDGAT
Sbjct: 168 VSYEKKRKRPKQKIANSNQDGAT 190

[Close]

BLAST of Carg17440 vs. NCBI nr
Match: XP_022143023.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70
Identity = 135/143 (94.41%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPN
Sbjct: 38  YENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPN 97

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAY ENG RPESNPFGARAVRLYLREVRDFQAKARG
Sbjct: 98  PPAXXXXXLRQAWGSLDALIGRLRAAYXENGFRPESNPFGARAVRLYLREVRDFQAKARG 157

Query: 168 VSYEKKRKRPKQKIANSNQDGAT 191
           VSYEKKRKRPKQKI NS QD  T
Sbjct: 158 VSYEKKRKRPKQKITNSTQDPPT 180

[Close]

BLAST of Carg17440 vs. NCBI nr
Match: XP_022719073.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Durio zibethinus])

HSP 1 Score: 270.4 bits (690), Expect = 4.7e-69
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 56  YENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 115

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARG
Sbjct: 116 PPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARG 175

Query: 168 VSYEKKRKRPKQKIANSNQDGAT 191
           VSYEKKRKRPKQK+A S Q  AT
Sbjct: 176 VSYEKKRKRPKQKVAPSAQAPAT 198

[Close]

BLAST of Carg17440 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 241.9 bits (616), Expect = 3.2e-64
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPN
Sbjct: 26  YENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPN 85

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAVRL+LREVRDFQAKARG
Sbjct: 86  PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARG 145

Query: 168 VSYEK 173
           VSYEK
Sbjct: 146 VSYEK 150

[Close]

BLAST of Carg17440 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-63
Identity = 116/139 (83.45%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPN
Sbjct: 34  YENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPN 93

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGG PE++PFG+R+VR++LREVRDFQAK+RG
Sbjct: 94  PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRG 153

Query: 168 VSYEKKRKRPKQKIANSNQ 187
           VSYEKKRKR   K    +Q
Sbjct: 154 VSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of Carg17440 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 228.4 bits (581), Expect = 3.7e-60
Identity = 107/124 (86.29%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   CPFFG PN
Sbjct: 49  YENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPN 108

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPA     LRQAWGSLDALIGRLRAA+EENGG PE+NPFGARAVRLYLREVRD QAKARG
Sbjct: 109 PPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARG 168

Query: 168 VSYE 172
           +SYE
Sbjct: 169 ISYE 172

[Close]

BLAST of Carg17440 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 214.9 bits (546), Expect = 4.2e-56
Identity = 100/131 (76.34%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YE+QKRRDWNTF QYL+NH+PPL+L  CSGAHV+EFL+YLDQFGKTKVH   CP+FG   
Sbjct: 32  YESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQ 91

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PP+     L+QAWGSLDALIGRLRAAYEENGGRP+SNPF ARAVR+YLREVR+ QAKARG
Sbjct: 92  PPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARG 151

Query: 168 VSYE-KKRKRP 178
           + YE KKRKRP
Sbjct: 152 IPYEKKKRKRP 162

[Close]

BLAST of Carg17440 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 214.2 bits (544), Expect = 7.2e-56
Identity = 106/124 (85.48%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   C F+G P 
Sbjct: 55  YENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPX 114

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
              XXXXXLRQAWGSLDALIGRLRAA+EENGG+PE+NPFGARAVRLYLREVRD Q+KARG
Sbjct: 115 XXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARG 174

Query: 168 VSYE 172
           VSYE
Sbjct: 175 VSYE 178

[Close]

BLAST of Carg17440 vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.8e-63
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPN
Sbjct: 26  YENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPN 85

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGG PE+NPFG+RAVRL+LREVRDFQAKARG
Sbjct: 86  PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARG 145

Query: 168 VSYEK 173
           VSYEK
Sbjct: 146 VSYEK 150

[Close]

BLAST of Carg17440 vs. Swiss-Prot
Match: sp|Q9M836|LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.4e-62
Identity = 116/139 (83.45%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPN
Sbjct: 34  YENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPN 93

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEENGG PE++PFG+R+VR++LREVRDFQAK+RG
Sbjct: 94  PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRG 153

Query: 168 VSYEKKRKRPKQKIANSNQ 187
           VSYEKKRKR   K    +Q
Sbjct: 154 VSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of Carg17440 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.6e-59
Identity = 107/124 (86.29%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   CPFFG PN
Sbjct: 49  YENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPN 108

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPA     LRQAWGSLDALIGRLRAA+EENGG PE+NPFGARAVRLYLREVRD QAKARG
Sbjct: 109 PPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARG 168

Query: 168 VSYE 172
           +SYE
Sbjct: 169 ISYE 172

[Close]

BLAST of Carg17440 vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-56
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YE+QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   CPFFG P 
Sbjct: 41  YESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHPA 100

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           P  XXXXXLRQAWGSLDAL+GRLRAAYEENGGRPE+NPFGARAVRLYLREVR+ QA+ARG
Sbjct: 101 PXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARG 160

Query: 168 VSYE 172
           VSYE
Sbjct: 161 VSYE 164

[Close]

BLAST of Carg17440 vs. Swiss-Prot
Match: sp|A2Y3I2|G1L9_ORYSI (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 99/124 (79.84%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YE+QKRRDWNTF QYLRNH+PPL+LP CSGAHV+EFL+YLDQFGKTKVH   C +FG PN
Sbjct: 68  YESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKVHADGCAYFGEPN 127

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPA     LRQAWGSLDALIGRLRAAYEE+GGRPESNPF ARAVR+YLREVR+ QAKARG
Sbjct: 128 PPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYLREVREAQAKARG 187

Query: 168 VSYE 172
           + YE
Sbjct: 188 IPYE 191

[Close]

BLAST of Carg17440 vs. TrEMBL
Match: tr|A0A061F0P9|A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 60  YENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 119

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARG
Sbjct: 120 PPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARG 179

Query: 168 VSYEKKRKRPKQKIANSNQDGA 190
           VSYEKKRKRPKQK+A+S Q  A
Sbjct: 180 VSYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Carg17440 vs. TrEMBL
Match: tr|A0A061F1I7|A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 60  YENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 119

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARG
Sbjct: 120 PPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARG 179

Query: 168 VSYEKKRKRPKQKIANSNQDGA 190
           VSYEKKRKRPKQK+A+S Q  A
Sbjct: 180 VSYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Carg17440 vs. TrEMBL
Match: tr|A0A061F8S7|A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 60  YENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 119

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARG
Sbjct: 120 PPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARG 179

Query: 168 VSYEKKRKRPKQKIANSNQDGA 190
           VSYEKKRKRPKQK+A+S Q  A
Sbjct: 180 VSYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Carg17440 vs. TrEMBL
Match: tr|A0A061F1X4|A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 48  YENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 107
           YENQKRRDWNTFCQYLRNHRPPLSL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN
Sbjct: 60  YENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPN 119

Query: 108 PPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARG 167
           PPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE NPFGARAVR+YLREVRDFQAKARG
Sbjct: 120 PPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKARG 179

Query: 168 VSYEKKRKRPKQKIANSNQDGA 190
           VSYEKKRKRPKQK+A+S Q  A
Sbjct: 180 VSYEKKRKRPKQKVASSAQPPA 201

[Close]

BLAST of Carg17440 vs. TrEMBL
Match: tr|A0A2N9E186|A0A2N9E186_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS348 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.6e-68
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 49  ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 108
           ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP
Sbjct: 52  ENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNP 111

Query: 109 PAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGV 168
           PAXXXXXLRQAWGSLDALIGRLRAAYEE+GGRPE+NPFGARAVRLYLREVRDFQAKARGV
Sbjct: 112 PAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRLYLREVRDFQAKARGV 171

Query: 169 SYEKKRKRPKQKIANSN 186
           SYEKKRKRPK K+  +N
Sbjct: 172 SYEKKRKRPKPKMTPNN 188

The following BLAST results are available for this feature:

BLAST of Carg17440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938293.1	4.4e-75	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata]	[more]
XP_022965962.1	4.4e-75	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]
XP_023538298.1	4.4e-75	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022143023.1	9.4e-70	94.41	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia]	[more]
XP_022719073.1	4.7e-69	93.71	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Durio zibethinus]	[more]

BLAST of Carg17440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	3.2e-64	93.60	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.6e-63	83.45	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.7e-60	86.29	Protein of unknown function (DUF640)	[more]
AT1G07090.1	4.2e-56	76.34	Protein of unknown function (DUF640)	[more]
AT2G31160.1	7.2e-56	85.48	Protein of unknown function (DUF640)	[more]

BLAST of Carg17440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NNI3\|LSH1_ARATH	5.8e-63	93.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9M836\|LSH2_ARATH	8.4e-62	83.45	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LW68\|LSH4_ARATH	6.6e-59	86.29	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q7XDD0\|G1L5_ORYSJ	4.0e-56	87.10	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
sp\|A2Y3I2\|G1L9_ORYSI	1.5e-55	79.84	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]

BLAST of Carg17440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061F0P9\|A0A061F0P9_THECC	4.0e-69	93.66	Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F1I7\|A0A061F1I7_THECC	4.0e-69	93.66	Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F8S7\|A0A061F8S7_THECC	4.0e-69	93.66	Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F1X4\|A0A061F1X4_THECC	4.0e-69	93.66	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A2N9E186\|A0A2N9E186_FAGSY	7.6e-68	94.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS348 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17440-RA	Carg17440-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 39..160 e-value: 1.1E-65 score: 219.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 47..174 score: 85.331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..190
None	No IPR available	PANTHER	PTHR31165:SF16	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 13..186
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 13..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17440	Cla013619	Watermelon (97103) v1	carwmB0242
Carg17440	Csa2G009550	Cucumber (Chinese Long) v2	carcuB0282
Carg17440	MELO3C004422	Melon (DHL92) v3.5.1	carmeB0258
Carg17440	ClCG02G017040	Watermelon (Charleston Gray)	carwcgB0245
Carg17440	CSPI02G02570	Wild cucumber (PI 183967)	carcpiB0286
Carg17440	Cucsa.132890	Cucumber (Gy14) v1	carcgyB0300
Carg17440	CmaCh12G011490	Cucurbita maxima (Rimu)	carcmaB0355
Carg17440	CmaCh05G012310	Cucurbita maxima (Rimu)	carcmaB0356
Carg17440	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	carlsiB226
Carg17440	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	carcpeB0357
Carg17440	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	carcpeB0362
Carg17440	CsGy2G002670	Cucumber (Gy14) v2	carcgybB0269
Carg17440	MELO3C004422.2	Melon (DHL92) v3.6.1	carmedB0268
Carg17440	CsaV3_2G003730	Cucumber (Chinese Long) v3	carcucB0286
Carg17440	Cla97C02G042750	Watermelon (97103) v2	carwmbB0259
Carg17440	Bhi06G001547	Wax gourd	carwgoB0333

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17440	Carg23007	Silver-seed gourd	carcarB297

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17440	Cucurbita moschata (Rifu)	carcmoB0356
Carg17440	Cucurbita moschata (Rifu)	carcmoB0357
Carg17440	Cucurbita pepo (Zucchini)	carcpeB0361
Carg17440	Wax gourd	carwgoB0331