Carg17440-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA ATGGATTTGTTCTCAGAATCATCCTCAAATCCCACTCCTTACGACACCACCAACACCGCCGCCGCCGCCGCCGCCGTTGTTACAGCATGTCCATCACCATCTTCCTCCTCTTCCGCCACTGCCACCGCCACACCTAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACGTTTTGTCAGTACCTTCGCAACCATCGTCCACCGTTGTCTCTACCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGATCAGTTTGGGAAGACCAAAGTCCATAACCAAACCTGCCCGTTTTTTGGCCTTCCTAACCCGCCTGCCCCTTGTCCCTGCCCGCTCCGGCAAGCTTGGGGCAGCCTTGATGCACTCATTGGTCGCCTCCGTGCTGCCTATGAAGAGAACGGCGGCCGGCCGGAATCTAACCCTTTTGGAGCTAGAGCTGTTAGGCTTTATTTAAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGGGTTAGCTATGAGAAGAAGAGAAAAAGGCCGAAGCAAAAGATCGCAAATTCAAATCAAGACGGTGCAACTTGA MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIANSNQDGAT
BLAST of Carg17440-RA vs. NCBI nr
Match: XP_022938293.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata]) HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg17440-RA vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]) HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg17440-RA vs. NCBI nr
Match: XP_023538298.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 290.4 bits (742), Expect = 4.4e-75 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg17440-RA vs. NCBI nr
Match: XP_022143023.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia]) HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70 Identity = 135/143 (94.41%), Postives = 136/143 (95.10%), Query Frame = 0
BLAST of Carg17440-RA vs. NCBI nr
Match: XP_022719073.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Durio zibethinus]) HSP 1 Score: 270.4 bits (690), Expect = 4.7e-69 Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0
BLAST of Carg17440-RA vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640)) HSP 1 Score: 241.9 bits (616), Expect = 3.2e-64 Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Carg17440-RA vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640)) HSP 1 Score: 238.0 bits (606), Expect = 4.6e-63 Identity = 116/139 (83.45%), Postives = 126/139 (90.65%), Query Frame = 0
BLAST of Carg17440-RA vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640)) HSP 1 Score: 228.4 bits (581), Expect = 3.7e-60 Identity = 107/124 (86.29%), Postives = 110/124 (88.71%), Query Frame = 0
BLAST of Carg17440-RA vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640)) HSP 1 Score: 214.9 bits (546), Expect = 4.2e-56 Identity = 100/131 (76.34%), Postives = 113/131 (86.26%), Query Frame = 0
BLAST of Carg17440-RA vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640)) HSP 1 Score: 214.2 bits (544), Expect = 7.2e-56 Identity = 106/124 (85.48%), Postives = 111/124 (89.52%), Query Frame = 0
BLAST of Carg17440-RA vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 5.8e-63 Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Carg17440-RA vs. Swiss-Prot
Match: sp|Q9M836|LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 8.4e-62 Identity = 116/139 (83.45%), Postives = 126/139 (90.65%), Query Frame = 0
BLAST of Carg17440-RA vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 6.6e-59 Identity = 107/124 (86.29%), Postives = 110/124 (88.71%), Query Frame = 0
BLAST of Carg17440-RA vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 4.0e-56 Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0
BLAST of Carg17440-RA vs. Swiss-Prot
Match: sp|A2Y3I2|G1L9_ORYSI (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55 Identity = 99/124 (79.84%), Postives = 109/124 (87.90%), Query Frame = 0
BLAST of Carg17440-RA vs. TrEMBL
Match: tr|A0A061F0P9|A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69 Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg17440-RA vs. TrEMBL
Match: tr|A0A061F1I7|A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69 Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg17440-RA vs. TrEMBL
Match: tr|A0A061F8S7|A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69 Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg17440-RA vs. TrEMBL
Match: tr|A0A061F1X4|A0A061F1X4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 4.0e-69 Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Carg17440-RA vs. TrEMBL
Match: tr|A0A2N9E186|A0A2N9E186_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS348 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 7.6e-68 Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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