Bhi06G001547 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G001547
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Light-dependent short hypocotyls protein
Location	chr6 : 50811549 .. 50813056 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTATTTACTACTGTTCCCACTCTTAACCTTTACTCCTCATTTTAACCTTTAATTTCCTCTCTCTCCTCACTGTTTAACTCTCAGTTTTCTTTCACTTCCTTCTCTCTTCAAAAACAAAATCTCTCTCTCTTCTCTAATAATTTCCCCATTTCCCTCTCTTCATACCATAAAACTCTCTCATCACTCACCCTTTTCCCCTTCTATCCTCTTCTTCTAAGAAACACAATATCAAAAACAACCCCCAAAACAAAAACATGTTTTTGGAAAAGAAGTCATTTTGATCAAAGTTGTTGGATTTTGGGCTATTTTGGGCTATTTTTCTTCTATTGTTTTGGTTTTTTTTTTTTTTTAAAAAAAAAATTCTCACTTTCAATTTTATGATCATCAATGACGTTAATCCCTTTATGATCACCTCCCCCTTCACATTGTTCTTCTTCTTGATCATCTCTTCTTGCCATGCAAATTAAAACCCACTTCTTAGTTGAAAAAAGAAAAAAAAAAACCCTAAAATGAGAAGTGGGTTCTCTTCAAAACCCTAAAAGATGAGATCTTCCTCACACCGATAACAAAAAGTTTCAATCTTTATAAACGTTTCCTCATTTCTCTTTCTTTTTCAATTACTTTCATTGATATATATTTTTTTAGATGGATTTGTTTTCAGAATCATCATCCAATCCTCCTACTACTTATACCACTACTGCCACGGTCGCCGCCACCGCACCACCCACCGCCTCCGCCTCTGCCGCCACACCAAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGGAAGACGAAAGTACACAACCAAACCTGCCCCTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCGCTGAGACAAGCGTGGGGCAGCTTAGACGCCTTGATCGGTCGGCTCCGGGCAGCTTATGAAGAGAACGGCGGTCGGGCGGAGGGAAATCCGTTTGGAGCAAGAGCGGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAAGTTACTAATTCTTCAGCAACTCATGATCATCAAAATCCTACAACTTGAAATTCTTATATATATATATATATATAAATATATATATTGTGTATGAGAAAAGAATTGTAGTCTCTCTATTTTTAATTTTGAATTATTGCAAACATCGAGATGAAGATTTGAACCTTATAGAAGGTTTTTCTCTTTTTTCTCTCGCAAATGATCTTAAGCTATGTTCAAGTTGACTTTTTATTTTATTTCCATATGTTCTAGGTAAATATTTATGATTATGATATAAGTATTGGAGTATGTTAATCTCTATGGTATTATTTAGTAGAGGGTTTTTTTTCCTTCTTTTGATCTTGAGGTGAT

mRNA sequence

GCCTATTTACTACTGTTCCCACTCTTAACCTTTACTCCTCATTTTAACCTTTAATTTCCTCTCTCTCCTCACTGTTTAACTCTCAGTTTTCTTTCACTTCCTTCTCTCTTCAAAAACAAAATCTCTCTCTCTTCTCTAATAATTTCCCCATTTCCCTCTCTTCATACCATAAAACTCTCTCATCACTCACCCTTTTCCCCTTCTATCCTCTTCTTCTAAGAAACACAATATCAAAAACAACCCCCAAAACAAAAACATGTTTTTGGAAAAGAAGTCATTTTGATCAAAGTTGTTGGATTTTGGGCTATTTTGGGCTATTTTTCTTCTATTGTTTTGGTTTTTTTTTTTTTTTAAAAAAAAAATTCTCACTTTCAATTTTATGATCATCAATGACGTTAATCCCTTTATGATCACCTCCCCCTTCACATTGTTCTTCTTCTTGATCATCTCTTCTTGCCATGCAAATTAAAACCCACTTCTTAGTTGAAAAAAGAAAAAAAAAAACCCTAAAATGAGAAGTGGGTTCTCTTCAAAACCCTAAAAGATGAGATCTTCCTCACACCGATAACAAAAAGTTTCAATCTTTATAAACGTTTCCTCATTTCTCTTTCTTTTTCAATTACTTTCATTGATATATATTTTTTTAGATGGATTTGTTTTCAGAATCATCATCCAATCCTCCTACTACTTATACCACTACTGCCACGGTCGCCGCCACCGCACCACCCACCGCCTCCGCCTCTGCCGCCACACCAAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGGAAGACGAAAGTACACAACCAAACCTGCCCCTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCGCTGAGACAAGCGTGGGGCAGCTTAGACGCCTTGATCGGTCGGCTCCGGGCAGCTTATGAAGAGAACGGCGGTCGGGCGGAGGGAAATCCGTTTGGAGCAAGAGCGGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAAGTTACTAATTCTTCAGCAACTCATGATCATCAAAATCCTACAACTTGAAATTCTTATATATATATATATATATAAATATATATATTGTGTATGAGAAAAGAATTGTAGTCTCTCTATTTTTAATTTTGAATTATTGCAAACATCGAGATGAAGATTTGAACCTTATAGAAGGTTTTTCTCTTTTTTCTCTCGCAAATGATCTTAAGCTATGTTCAAGTTGACTTTTTATTTTATTTCCATATGTTCTAGGTAAATATTTATGATTATGATATAAGTATTGGAGTATGTTAATCTCTATGGTATTATTTAGTAGAGGGTTTTTTTTCCTTCTTTTGATCTTGAGGTGAT

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATCCTCCTACTACTTATACCACTACTGCCACGGTCGCCGCCACCGCACCACCCACCGCCTCCGCCTCTGCCGCCACACCAAGCCGGTACGAGAATCAAAAACGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCGCCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGGAAGACGAAAGTACACAACCAAACCTGCCCCTTCTTCGGGCTGCCCAACCCACCTGCCCCCTGCCCGTGCCCGCTGAGACAAGCGTGGGGCAGCTTAGACGCCTTGATCGGTCGGCTCCGGGCAGCTTATGAAGAGAACGGCGGTCGGGCGGAGGGAAATCCGTTTGGAGCAAGAGCGGTTCGTTTGTATTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAAGTTACTAATTCTTCAGCAACTCATGATCATCAAAATCCTACAACTTGA

Protein sequence

MDLFSESSSNPPTTYTTTATVAATAPPTASASAATPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKVTNSSATHDHQNPTT

Homology

[Close]

BLAST of Bhi06G001547 vs. Swiss-Prot
Match: sp|Q6NNI3|LSH1_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGL
Sbjct: 24  SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGL 83

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKA
Sbjct: 84  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKA 143

Query: 157 RGVSYEK 164
           RGVSYEK
Sbjct: 144 RGVSYEK 150

[Close]

BLAST of Bhi06G001547 vs. Swiss-Prot
Match: sp|Q9M836|LSH2_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 116/140 (82.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTFCQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGL
Sbjct: 32  SRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGL 91

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+
Sbjct: 92  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKS 151

Query: 157 RGVSYEKKRKRPKQKVTNSS 177
           RGVSYEKKRKR   K    S
Sbjct: 152 RGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of Bhi06G001547 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.5e-58
Identity = 107/126 (84.92%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG 
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPA     LRQAWGSLDALIGRLRAA+EENGG  E NPFGARAVRLYLREVRD QAKA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 157 RGVSYE 163
           RG+SYE
Sbjct: 167 RGISYE 172

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BLAST of Bhi06G001547 vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 108/126 (85.71%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG 
Sbjct: 39  SRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGH 98

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           P P  XXXXXLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVRLYLREVR+ QA+A
Sbjct: 99  PAPXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARA 158

Query: 157 RGVSYE 163
           RGVSYE
Sbjct: 159 RGVSYE 164

[Close]

BLAST of Bhi06G001547 vs. Swiss-Prot
Match: sp|Q9LMK2|LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 103/139 (74.10%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 36  PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFG 95
           PSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+FG
Sbjct: 29  PSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFG 88

Query: 96  LPNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAK 155
              PP+     L+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QAK
Sbjct: 89  HQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAK 148

Query: 156 ARGVSYE-KKRKRPKQKVT 174
           ARG+ YE KKRKRP    T
Sbjct: 149 ARGIPYEKKKRKRPPTVTT 167

[Close]

BLAST of Bhi06G001547 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-62
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGL
Sbjct: 24  SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGL 83

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKA
Sbjct: 84  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKA 143

Query: 157 RGVSYEK 164
           RGVSYEK
Sbjct: 144 RGVSYEK 150

[Close]

BLAST of Bhi06G001547 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 234.2 bits (596), Expect = 6.6e-62
Identity = 116/140 (82.86%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTFCQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGL
Sbjct: 32  SRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGL 91

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+
Sbjct: 92  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKS 151

Query: 157 RGVSYEKKRKRPKQKVTNSS 177
           RGVSYEKKRKR   K    S
Sbjct: 152 RGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of Bhi06G001547 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 225.3 bits (573), Expect = 3.1e-59
Identity = 107/126 (84.92%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG 
Sbjct: 47  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           PNPPA     LRQAWGSLDALIGRLRAA+EENGG  E NPFGARAVRLYLREVRD QAKA
Sbjct: 107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query: 157 RGVSYE 163
           RG+SYE
Sbjct: 167 RGISYE 172

[Close]

BLAST of Bhi06G001547 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-56
Identity = 103/139 (74.10%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 36  PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFG 95
           PSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+FG
Sbjct: 29  PSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFG 88

Query: 96  LPNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAK 155
              PP+     L+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QAK
Sbjct: 89  HQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAK 148

Query: 156 ARGVSYE-KKRKRPKQKVT 174
           ARG+ YE KKRKRP    T
Sbjct: 149 ARGIPYEKKKRKRPPTVTT 167

[Close]

BLAST of Bhi06G001547 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-55
Identity = 106/126 (84.13%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 37  SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGL 96
           SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+G 
Sbjct: 53  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH 112

Query: 97  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKA 156
           P    XXXXXLRQAWGSLDALIGRLRAA+EENGG+ E NPFGARAVRLYLREVRD Q+KA
Sbjct: 113 PXXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKA 172

Query: 157 RGVSYE 163
           RGVSYE
Sbjct: 173 RGVSYE 178

[Close]

BLAST of Bhi06G001547 vs. TrEMBL
Match: tr|A0A1S3C396|A0A1S3C396_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.4e-71
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 158 GVSYEKKRKRPKQKV-TNSSATHDHQNPTT 187
           GVSYEKKRKRPKQK+ T+   THDH   +T
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDST 188

[Close]

BLAST of Bhi06G001547 vs. TrEMBL
Match: tr|A0A0A0LG60|A0A0A0LG60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.4e-71
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 158 GVSYEKKRKRPKQKV-TNSSATHDHQNPTT 187
           GVSYEKKRKRPKQK+ T+   THDH   +T
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDST 188

[Close]

BLAST of Bhi06G001547 vs. TrEMBL
Match: tr|A0A061F0P9|A0A061F0P9_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 158 GVSYEKKRKRPKQKVTNSS 177
           GVSYEKKRKRPKQKV +S+
Sbjct: 179 GVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of Bhi06G001547 vs. TrEMBL
Match: tr|A0A061F1I7|A0A061F1I7_THECC (Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 158 GVSYEKKRKRPKQKVTNSS 177
           GVSYEKKRKRPKQKV +S+
Sbjct: 179 GVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of Bhi06G001547 vs. TrEMBL
Match: tr|A0A061F8S7|A0A061F8S7_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.4e-68
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 158 GVSYEKKRKRPKQKVTNSS 177
           GVSYEKKRKRPKQKV +S+
Sbjct: 179 GVSYEKKRKRPKQKVASSA 197

[Close]

BLAST of Bhi06G001547 vs. NCBI nr
Match: XP_011648733.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_2G009550 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 158 GVSYEKKRKRPKQKV-TNSSATHDHQNPTT 187
           GVSYEKKRKRPKQK+ T+   THDH   +T
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDST 188

[Close]

BLAST of Bhi06G001547 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 39  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 98

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR
Sbjct: 99  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 158

Query: 158 GVSYEKKRKRPKQKV-TNSSATHDHQNPTT 187
           GVSYEKKRKRPKQK+ T+   THDH   +T
Sbjct: 159 GVSYEKKRKRPKQKINTSXXXTHDHHQDST 188

[Close]

BLAST of Bhi06G001547 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 2.3e-68
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 47  RYENQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 106

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKAR
Sbjct: 107 NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKAR 166

Query: 158 GVSYEKKRKRPKQKVTNSS 177
           GVSYEKKRKRPKQK+ NS+
Sbjct: 167 GVSYEKKRKRPKQKIANSN 185

[Close]

BLAST of Bhi06G001547 vs. NCBI nr
Match: XP_022143023.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 5.0e-68
Identity = 136/151 (90.07%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 36  PSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFG 95
           PSRYENQKRRDWNTFCQYLRNHRPPLAL MCSGAHVLEFLRYLDQFGKTKVHNQ CPFFG
Sbjct: 35  PSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFG 94

Query: 96  LPNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAK 155
           LPNPPAXXXXXLRQAWGSLDALIGRLRAAY ENG R E NPFGARAVRLYLREVRDFQAK
Sbjct: 95  LPNPPAXXXXXLRQAWGSLDALIGRLRAAYXENGFRPESNPFGARAVRLYLREVRDFQAK 154

Query: 156 ARGVSYEKKRKRPKQKVTNSSATHDHQNPTT 187
           ARGVSYEKKRKRPKQK+TNS+     Q+P T
Sbjct: 155 ARGVSYEKKRKRPKQKITNST-----QDPPT 180

[Close]

BLAST of Bhi06G001547 vs. NCBI nr
Match: EOY10918.1 (Uncharacterized protein TCM_026191 isoform 1 [Theobroma cacao])

HSP 1 Score: 266.5 bits (680), Expect = 6.6e-68
Identity = 131/139 (94.24%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 38  RYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 97
           RYENQKRRDWNTFCQYLRNHRPPL+L MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP
Sbjct: 59  RYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLP 118

Query: 98  NPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKAR 157
           NPPAXXXXXLRQAWGSLDALIGRLRAAYEE+GGR EGNPFGARAVR+YLREVRDFQAKAR
Sbjct: 119 NPPAXXXXXLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGARAVRIYLREVRDFQAKAR 178

Query: 158 GVSYEKKRKRPKQKVTNSS 177
           GVSYEKKRKRPKQKV +S+
Sbjct: 179 GVSYEKKRKRPKQKVASSA 197

The following BLAST results are available for this feature:

BLAST of Bhi06G001547 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NNI3\|LSH1_ARATH	3.1e-61	91.34	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9M836\|LSH2_ARATH	1.2e-60	82.86	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LW68\|LSH4_ARATH	5.5e-58	84.92	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q7XDD0\|G1L5_ORYSJ	2.6e-55	85.71	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
sp\|Q9LMK2\|LSH6_ARATH	2.6e-55	74.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Bhi06G001547 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28490.1	1.7e-62	91.34	Protein of unknown function (DUF640)	[more]
AT3G04510.1	6.6e-62	82.86	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.1e-59	84.92	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.4e-56	74.10	Protein of unknown function (DUF640)	[more]
AT2G31160.1	6.0e-55	84.13	Protein of unknown function (DUF640)	[more]

BLAST of Bhi06G001547 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C396\|A0A1S3C396_CUCME	1.4e-71	93.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LG60\|A0A0A0LG60_CUCSA	1.4e-71	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=4 SV=1	[more]
tr\|A0A061F0P9\|A0A061F0P9_THECC	4.4e-68	94.24	Uncharacterized protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F1I7\|A0A061F1I7_THECC	4.4e-68	94.24	Uncharacterized protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]
tr\|A0A061F8S7\|A0A061F8S7_THECC	4.4e-68	94.24	Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026191 PE=4 ...	[more]

BLAST of Bhi06G001547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648733.1	2.2e-71	93.33	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis sativus] >KG...	[more]
XP_008456451.1	2.2e-71	93.33	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo]	[more]
XP_022965962.1	2.3e-68	94.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]
XP_022143023.1	5.0e-68	90.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia]	[more]
EOY10918.1	6.6e-68	94.24	Uncharacterized protein TCM_026191 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0008150	biological_process
biological_process	GO:0050434	positive regulation of viral transcription
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0042025	host cell nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0001070	RNA binding transcription factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001547	Bhi06M001547	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..151 e-value: 2.0E-65 score: 218.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 38..165 score: 83.005
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..186
None	No IPR available	PANTHER	PTHR31165:SF16	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED	coord: 8..182
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 8..182

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G001547	Csa2G009550	Cucumber (Chinese Long) v2	cuwgoB134
Bhi06G001547	MELO3C004422	Melon (DHL92) v3.5.1	mewgoB466
Bhi06G001547	ClCG02G017040	Watermelon (Charleston Gray)	wcgwgoB263
Bhi06G001547	CSPI02G02570	Wild cucumber (PI 183967)	cpiwgoB135
Bhi06G001547	Cucsa.132890	Cucumber (Gy14) v1	cgywgoB250
Bhi06G001547	CmaCh05G012310	Cucurbita maxima (Rimu)	cmawgoB0933
Bhi06G001547	CmaCh12G011490	Cucurbita maxima (Rimu)	cmawgoB0192
Bhi06G001547	Lsi11G004080	Bottle gourd (USVL1VR-Ls)	lsiwgoB106
Bhi06G001547	Cp4.1LG07g10840	Cucurbita pepo (Zucchini)	cpewgoB1013
Bhi06G001547	Cp4.1LG11g10130	Cucurbita pepo (Zucchini)	cpewgoB0130
Bhi06G001547	CsGy2G002670	Cucumber (Gy14) v2	cgybwgoB130
Bhi06G001547	MELO3C004422.2	Melon (DHL92) v3.6.1	medwgoB469
Bhi06G001547	Carg23007	Silver-seed gourd	carwgoB1261
Bhi06G001547	Carg17440	Silver-seed gourd	carwgoB0333
Bhi06G001547	CsaV3_2G003730	Cucumber (Chinese Long) v3	cucwgoB142
Bhi06G001547	Cla013619	Watermelon (97103) v1	wgowmB136
Bhi06G001547	Cla97C02G042750	Watermelon (97103) v2	wgowmbB132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G001547	Cucumber (Gy14) v1	cgywgoB251
Bhi06G001547	Cucumber (Gy14) v2	cgybwgoB133
Bhi06G001547	Cucurbita maxima (Rimu)	cmawgoB0106
Bhi06G001547	Cucurbita maxima (Rimu)	cmawgoB0177
Bhi06G001547	Cucurbita maxima (Rimu)	cmawgoB0917
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB0100
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB0171
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB0187
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB0934
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB0919
Bhi06G001547	Cucurbita moschata (Rifu)	cmowgoB1101
Bhi06G001547	Cucurbita pepo (Zucchini)	cpewgoB0114
Bhi06G001547	Cucurbita pepo (Zucchini)	cpewgoB1006
Bhi06G001547	Cucurbita pepo (Zucchini)	cpewgoB1025
Bhi06G001547	Wild cucumber (PI 183967)	cpiwgoB137
Bhi06G001547	Cucumber (Chinese Long) v3	cucwgoB144
Bhi06G001547	Bottle gourd (USVL1VR-Ls)	lsiwgoB108
Bhi06G001547	Melon (DHL92) v3.6.1	medwgoB457
Bhi06G001547	Melon (DHL92) v3.5.1	mewgoB454
Bhi06G001547	Watermelon (Charleston Gray)	wcgwgoB260
Bhi06G001547	Watermelon (97103) v2	wgowmbB128
Bhi06G001547	Watermelon (97103) v1	wgowmB133
Bhi06G001547	Silver-seed gourd	carwgoB1056
Bhi06G001547	Silver-seed gourd	carwgoB1260